jgi.p|Nanoce1779_2|581704, mRNA_2814 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|581704
Unique Name	mRNA_2814
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	3074
Alignment location	scaffold_5:1268892..1272062 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	581790
Track	FilteredModels2
ProteinId	581704

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_5	supercontig	scaffold_5:1268892..1272062 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|581704	gene_2814	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|581704	mRNA_2814-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2814	CDS_2814	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_5:1268892..1272062-
coding sequence from alignment at scaffold_5:1268892..1272062-

mRNA sequence

>mRNA_2814 ID=mRNA_2814|Name=jgi.p|Nanoce1779_2|581704|organism=Nannochloropsis oceanica|type=mRNA|length=3074bp
GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGG
CTTGTGGTGGCCCAAGCGCTCCTGTAGAGCACAGGGCCGGCCTTCCGCTG
AACGTTGCTGCACTCTCAGCATATCCTCCTGGCCCTTGAACGCTGACAGC
TGCTGCTGGAGGTACGCGATGGTGGAGGCTGCATCCTGCTCCACTTCGCT
CTCTTCTTCCAGCAATTTCTCTGGTGCTCCTACTGCTATAACTGCAGCCG
CTGTAGTTGCCGCCAAGACCTTGGCTTCCAAATACCGCTCCGCCGCCTTC
ACTTGGGCAGTCAAATTATCGATCTCTTGCAGCAAAAAAGCACTATTGCT
GCTGACAACTCCTTCTCCATTCCTCCACTCCCGCCCTCCGTCCCTCGTCG
TCGTCGCACCCCCCGTATCGCAGACCACGTCGTTGAAGGCCTGCTGCAAC
AACGCCCTCGTTTGCGGCCCCTCCTGCCTTCCTCGCCTTATCCCTCCTAC
ATCACATCCACTGCCGCTATGCCCATAGCCCAGAGTGGTGTCGCGCCATT
GCCGAAACGCATGAGCCTTGTGTCGTCGCTGCCATCGCCGCGCTACCACC
CTTCCCTCCCTCCTGCCTTCCCTCTCCCTCGCCCGTCGGGCCACCAACAC
CTTCCACCGCTCCATAGCGACGCCTAGCTCGTGCAACCGACTCCCGGGTC
GATGCGGCCATGCCCAACTCCTTGTCTCGCGCTCCCTCCTCGTCCATCCA
GCCCACAGCAGCAGACCCCGCCGCAACGCGTGCCGGCGACGAGTCAAGAT
GCCCTTCGCCACAAGCACCCTTCGTGCCCGCCAGGCCTCCACACGCGGCA
GCCACTGGAGCAACAATGCCTGTCGCGTCGCCCTGAAGATCCTCGCCTTG
TTCCCCTTTCTTTCTGCGGCCCGTACCCGTCGTTCTACCCGAGCATGCTG
CGCCAGCGCCTGCACCGCACGTGTCACCATTCGTGCCTCCCATTGCCTCT
CGCCCTTGGTCACGGCCGCCCTCATGATCACGCGGCGATGCCGTGCCCAG
GCTGCCCAGGTCACCAAGCACTGAGCCAGCGTAGTGGGAGCCCGTTGTGG
GTGTCGCTCCAGCATCAAACCCTCGAAGCGAGCCACCTTGCACTGCAGCA
CCCACACCCTCCATCCCTCCCTCAGCCGTCGCCGGTTTTGTTGGGCTACC
AACGCCGCATCCTTGGTTTGCAAAACCGCGCGCTGCTGCTCCAATCGCCG
ACCAAACACCTTCCACGCCCGTTGCTTCCAAGCGGCGGCTGCCTTGTCCA
TCCCTTCTCGTCCCGTGGCGGTTGCGTAAGAGGTCAGCTGATGCCAACCC
TCAAACAAGCCTCGCAGCAGTCGCCTATCCCGCAGCTTCTGCATTTGAGC
CTTCAAGCGCTTGTGCCGCTGTCCCTCTGCGGCGACCTTGCGCCACCCAG
TCAGGCACCATCGAAGAAGCCGACGGCGGGCCGAGAGCTTGAAAAATAGC
TCTTGCTTGGTGTACCGATGCCAGGCGCCCCAAAAAAACCGCAAGAGCAC
CGCATCCTGCCTTTTCTGGACGCGACGGCAATACTGGGCCAGCCATCGAT
GCTGCGCTAGACTAGCCAATGCCTTGTGCGCGAGGACTTTGATGCCCGCC
GCTTGGAACCTCATCCCAAGCTCCCGCAGCCGTCGGGAGCGATGCGCGGC
CAGACGCAAGAGAGCAAAGGCCTCCCGCCGCCGACGGAGAGCGAATACGG
ATGAGGGCGAGGCGTAGAAGCGGGCGGCAACCTCCCCGAGGTCCTCCAGA
TGCTCCTCTTGCTGTGTGGCCTGACAGTTGGCTAAATACCGCTGCAGATC
TTGCATTGCCGCCGTCTGCTCCTCCAGTTCCTCTTCTAGCGCCTGGTTGT
CCGCCATCACAGCTGCCAGTACCCGAGAGGCCTCGGCTTTACCCTCTTGT
GCCACCTTCAGATTGACACGGGCCTTCTCCCTCTCCGCACGCACGGCAAA
GAGTCGCACCTTGACGGTCTGCGATTCCTTGAGAGAGTGCTGCAGGGTCT
CCACCTCTGCCTGTCGTTCGCGCAAGGCCGCATGCACGAGGTTGACCTCC
CCCTCAGCGGCTGTCCAGGACGGTGTGTCACACACAGCCCGCAGGAGCTC
CCACAGCTTCACATTCTGGCGGTGCATACCTTCTTGGTGTGTGTAGCGCA
AGGCCAGCTCGTCCTGCAAGGCCCCCACTTGCCGCTTGAGCGCAACCAGG
TCAAAGGCGGGGGTGAGCGGAGCGAGGGCAGGGGAAGGACTGGGGTACGG
TTCGAGGACGGGGAGGTCGGTGAGCAGCTTCTGGAAGGCGTCTTCGGTCT
GGGCACGGAGGCGACTCAGGCGCTGAAAGGCGGCCGTGGCGTTCTGAAGG
CCGGGGGAGCGAGAGGGGGAAGATGAAGGAGGAGAAGGAAGAGGGGCGAG
GTGCTGGGCGAAAGAAGAGGAAGAACAGGGGAGAGAGGAAGAAAATGGAG
CATTGTGGGTTCTGGTGACAGGAGTAGGAGGAGAGGGGTGGCGTATGCGA
GGCGGAGAGGTGGTGAAAAGAGGTGGGCATGGCGAGGAAGGCGCTGTTGA
CGCCAAAGACGATGACGGGGGCAAGGGTTGATGAGAATTCTCTCCATCCT
CTCCATCTTCAAAAGGCTGTCGGTAGAGATGGTGGTGCCGCTGCTGCCTT
TGCTGCCATCGCGCCTCGTGCTCCTGCTGGTGGGATGTCATCGTCCATGG
TGGAGGCGACCTTGGCCGAAGAGGAGCCTCCCAGCTTGGTTGTGAGGTGC
TGATTGGGACGGCAGACTGTACACGCTCCCAAGCTGAAGGTCGAGCTCGC
GTCGTCCCATGCCTTGTGCTAGTCGAGGTTGAGGAGGGTTTGTGCTGTTT
ATGGTACACAGGAGCGTAGTCATGGGGGGGCACTGCCGCGGAGGAGGCCT
TCATCAAGACCACCATGCCACTGCCGACTGGTTTTTCAAATTGCGTTGTT
GAAACTTGGAGAAGGGCCAAGGCAAGGTGAGTATTGTCTGGGGAGAAGGC
ATCTCATGTACAGCTAGTTCCCTG

protein sequence of jgi.p|Nanoce1779_2|581704

>mRNA_2814-protein ID=mRNA_2814-protein|Name=jgi.p|Nanoce1779_2|581704|organism=Nannochloropsis oceanica|type=polypeptide|length=266bp
MRPCPTPCLALPPRPSSPQQQTPPQRVPATSQDALRHKHPSCPPGLHTRQ
PLEQQCLSRRPEDPRLVPLSFCGPYPSFYPSMLRQRLHRTCHHSCLPLPL
ALGHGRPHDHAAMPCPGCPGHQALSQRSGSPLWVSLQHQTLEASHLALQH
PHPPSLPQPSPVLLGYQRRILGLQNRALLLQSPTKHLPRPLLPSGGCLVH
PFSSRGGCVRGQLMPTLKQASQQSPIPQLLHLSLQALVPLSLCGDLAPPS
QAPSKKPTAGRELEK*

mRNA from alignment at scaffold_5:1268892..1272062-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2814 ID=mRNA_2814|Name=jgi.p|Nanoce1779_2|581704|organism=Nannochloropsis oceanica|type=mRNA|length=3171bp|location=Sequence derived from alignment at scaffold_5:1268892..1272062- (Nannochloropsis oceanica)
GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGG
CTTGTGGTGGCCCAAGCGCTCCTGTAGAGCACAGGGCCGGCCTTCCGCTG
AACGTTGCTGCACTCTCAGCATATCCTCCTGGCCCTTGAACGCTGACAGC
TGCTGCTGGAGGTACGCGATGGTGGAGGCTGCATCCTGCTCCACTTCGCT
CTCTTCTTCCAGCAATTTCTCTGGTGCTCCTACTGCTATAACTGCAGCCG
CTGTAGTTGCCGCCAAGACCTTGGCTTCCAAATACCGCTCCGCCGCCTTC
ACTTGGGCAGTCAAATTATCGATCTCTTGCAGCAAAAAAGCACTATTGCT
GCTGACAACTCCTTCTCCATTCCTCCACTCCCGCCCTCCGTCCCTCGTCG
TCGTCGCACCCCCCGTATCGCAGACCACGTCGTTGAAGGCCTGCTGCAAC
AACGCCCTCGTTTGCGGCCCCTCCTGCCTTCCTCGCCTTATCCCTCCTAC
ATCACATCCACTGCCGCTATGCCCATAGCCCAGAGTGGTGTCGCGCCATT
GCCGAAACGCATGAGCCTTGTGTCGTCGCTGCCATCGCCGCGCTACCACC
CTTCCCTCCCTCCTGCCTTCCCTCTCCCTCGCCCGTCGGGCCACCAACAC
CTTCCACCGCTCCATAGCGACGCCTAGCTCGTGCAACCGACTCCCGGGTC
GATGCGGCCATGCCCAACTCCTTGTCTCGCGCTCCCTCCTCGTCCATCCA
GCCCACAGCAGCAGACCCCGCCGCAACGCGTGCCGGCGACGAGTCAAGAT
GCCCTTCGCCACAAGCACCCTTCGTGCCCGCCAGGCCTCCACACGCGGCA
GCCACTGGAGCAACAATGCCTGTCGCGTCGCCCTGAAGATCCTCGCCTTG
TTCCCCTTTCTTTCTGCGGCCCGTACCCGTCGTTCTACCCGAGCATGCTG
CGCCAGCGCCTGCACCGCACGTGTCACCATTCGTGCCTCCCATTGCCTCT
CGCCCTTGGTCACGGCCGCCCTCATGATCACGCGGCGATGCCGTGCCCAG
GCTGCCCAGGTCACCAAGCACTGAGCCAGCGTAGTGGGAGCCCGTTGTGG
GTGTCGCTCCAGCATCAAACCCTCGAAGCGAGCCACCTTGCACTGCAGCA
CCCACACCCTCCATCCCTCCCTCAGCCGTCGCCGGTTTTGTTGGGCTACC
AACGCCGCATCCTTGGTTTGCAAAACCGCGCGCTGCTGCTCCAATCGCCG
ACCAAACACCTTCCACGCCCGTTGCTTCCAAGCGGCGGCTGCCTTGTCCA
TCCCTTCTCGTCCCGTGGCGGTTGCGTAAGAGGTCAGCTGATGCCAACCC
TCAAACAAGCCTCGCAGCAGTCGCCTATCCCGCAGCTTCTGCATTTGAGC
CTTCAAGCGCTTGTGCCGCTGTCCCTCTGCGGCGACCTTGCGCCACCCAG
TCAGGCACCATCGAAGAAGCCGACGGCGGGCCGAGAGCTTGAAAAATAGC
TCTTGCTTGGTGTACCGATGCCAGGCGCCCCAAAAAAACCGCAAGAGCAC
CGCATCCTGCCTTTTCTGGACGCGACGGCAATACTGGGCCAGCCATCGAT
GCTGCGCTAGACTAGCCAATGCCTTGTGCGCGAGGACTTTGATGCCCGCC
GCTTGGAACCTCATCCCAAGCTCCCGCAGCCGTCGGGAGCGATGCGCGGC
CAGACGCAAGAGAGCAAAGGCCTCCCGCCGCCGACGGAGAGCGAATACGG
ATGAGGGCGAGGCGTAGAAGCGGGCGGCAACCTCCCCGAGGTCCTCCAGA
TGCTCCTCTTGCTGTGTGGCCTGACAGTTGGCTAAATACCGCTGCAGATC
TTGCATTGCCGCCGTCTGCTCCTCCAGTTCCTCTTCTAGCGCCTGGTTGT
CCGCCATCACAGCTGCCAGTACCCGAGAGGCCTCGGCTTTACCCTCTTGT
GCCACCTTCAGATTGACACGGGCCTTCTCCCTCTCCGCACGCACGGCAAA
GAGTCGCACCTTGACGGTCTGCGATTCCTTGAGAGAGTGCTGCAGGGTCT
CCACCTCTGCCTGTCGTTCGCGCAAGGCCGCATGCACGAGGTTGACCTCC
CCCTCAGCGGCTGTCCAGGACGGTGTGTCACACACAGCCCGCAGGAGCTC
CCACAGCTTCACATTCTGGCGGTGCATACCTTCTTGGTGTGTGTAGCGCA
AGGCCAGCTCGTCCTGCAAGGCCCCCACTTGCCGCTTGAGCGCAACCAGG
TCAAAGGCGGGGGTGAGCGGAGCGAGGGCAGGGGAAGGACTGGGGTACGG
TTCGAGGACGGGGAGGTCGGTGAGCAGCTTCTGGAAGGCGTCTTCGGTCT
GGGCACGGAGGCGACTCAGGCGCTGAAAGGCGGCCGTGGCGTTCTGAAGG
CCGGGGGAGCGAGAGGGGGAAGATGAAGGAGGAGAAGGAAGAGGGGCGAG
GTGCTGGGCGAAAGAAGAGGAAGAACAGGGGAGAGAGGAAGAAAATGGAG
CATTGTGGGTTCTGGTGACAGGAGTAGGAGGAGAGGGGTGGCGTATGCGA
GGCGGAGAGGTGGTGAAAAGAGGTGGGCATGGCGAGGAAGGCGCTGTTGA
CGCCAAAGACGATGACGGGGGCAAGGGTTGATGAGAATTCTCTCCATCCT
CTCCATCTTCAAAAGGCTGTCGGTAGAGATGGTGGTGCCGCTGCTGCCTT
TGCTGCCATCGCGCCTCGTGCTCCTGCTGGTGGGATGTCATCGTCCATGG
TGGAGGCGACCTTGGCCGAAGAGGAGCCTCCCAGCTTGGTTGTGAGGTGC
TGATTGGGACGGCAGACTGTACACGCTCCCAAGCTGAAGGTCGAGCTCGC
GTCGTCCCATGCCTTGTGCTAGTCGAGGTTGAGGAGGGTTTGTGCTGTTT
ATGGTACACAGGAGCGTAGTCTTATGATGACAATGACGAATAAGAGGGAG
GGAGCGGGAAACTTGATGAGTACGCAAGTTACCTCTACCACCCCGCCTTG
CGCAACGTGCTTCTTACCATGGGGGGGCACTGCCGCGGAGGAGGCCTTCA
TCAAGACCACCATGCCACTGCCGACTGGTTTTTCAAATTGCGTTGTTGAA
ACTTGGAGAAGGGCCAAGGCAAGGTGAGTATTGTCTGGGGAGAAGGCATC
TCATGTACAGCTAGTTCCCTG

Coding sequence (CDS) from alignment at scaffold_5:1268892..1272062-

>mRNA_2814 ID=mRNA_2814|Name=jgi.p|Nanoce1779_2|581704|organism=Nannochloropsis oceanica|type=CDS|length=798bp|location=Sequence derived from alignment at scaffold_5:1268892..1272062- (Nannochloropsis oceanica)
ATGCGGCCATGCCCAACTCCTTGTCTCGCGCTCCCTCCTCGTCCATCCAG
CCCACAGCAGCAGACCCCGCCGCAACGCGTGCCGGCGACGAGTCAAGATG
CCCTTCGCCACAAGCACCCTTCGTGCCCGCCAGGCCTCCACACGCGGCAG
CCACTGGAGCAACAATGCCTGTCGCGTCGCCCTGAAGATCCTCGCCTTGT
TCCCCTTTCTTTCTGCGGCCCGTACCCGTCGTTCTACCCGAGCATGCTGC
GCCAGCGCCTGCACCGCACGTGTCACCATTCGTGCCTCCCATTGCCTCTC
GCCCTTGGTCACGGCCGCCCTCATGATCACGCGGCGATGCCGTGCCCAGG
CTGCCCAGGTCACCAAGCACTGAGCCAGCGTAGTGGGAGCCCGTTGTGGG
TGTCGCTCCAGCATCAAACCCTCGAAGCGAGCCACCTTGCACTGCAGCAC
CCACACCCTCCATCCCTCCCTCAGCCGTCGCCGGTTTTGTTGGGCTACCA
ACGCCGCATCCTTGGTTTGCAAAACCGCGCGCTGCTGCTCCAATCGCCGA
CCAAACACCTTCCACGCCCGTTGCTTCCAAGCGGCGGCTGCCTTGTCCAT
CCCTTCTCGTCCCGTGGCGGTTGCGTAAGAGGTCAGCTGATGCCAACCCT
CAAACAAGCCTCGCAGCAGTCGCCTATCCCGCAGCTTCTGCATTTGAGCC
TTCAAGCGCTTGTGCCGCTGTCCCTCTGCGGCGACCTTGCGCCACCCAGT
CAGGCACCATCGAAGAAGCCGACGGCGGGCCGAGAGCTTGAAAAATAG

Synonyms

Publications