jgi.p|Nanoce1779_2|341062, mRNA_2813 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|341062
Unique Name	mRNA_2813
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1422
Alignment location	scaffold_5:1268546..1270560 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	341148
Track	FilteredModels2
ProteinId	341062

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_5	supercontig	scaffold_5:1268546..1270560 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|341062	gene_2813	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|341062	mRNA_2813-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2813	CDS_2813	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_5:1268546..1270560+
coding sequence from alignment at scaffold_5:1268546..1270560+

mRNA sequence

>mRNA_2813 ID=mRNA_2813|Name=jgi.p|Nanoce1779_2|341062|organism=Nannochloropsis oceanica|type=mRNA|length=1422bp
GTGGAATCTTTCCTCTTGGGATGATCCGTACCTAAAGGGAACTAGCTGTA
CATGAGATGCCTTCTCCCCAGACAATACTCACCTTGCCTTGGCCCTTCTC
CAAGTTTCAACAACGCAATTTGAAAAACCAGTCGGCAGTGGCATGGTGGT
CTTGATGAAGGCCTCCTCCGCGGCAGTGCCCCCCCATGCACAAACCCTCC
TCAACCTCGACTAGCACAAGGCATGGGACGACGCGAGCTCGACCTTCAGC
TTGGGAGCGTGTACAGTCTGCCGTCCCAATCAGCACCTCACAACCAAGCT
GGGAGGCTCCTCTTCGGCCAAGGTCGCCTCCACCATGGACGATGACATCC
CACCAGCAGGAGCACGAGGCGCGATGGCAGCAAAGGCAGCAGCGGCACCA
CCATCTCTACCGACAGCCTTTTGAAGATGGAGAGGATGGAGAGAATTCTC
ATCAACCCTTGCCCCCGTCATCGTCTTTGGCGTCAACAGCGCCTTCCTCG
CCATGCCCACCTCTTTTCACCACCTCTCCGCCTCGCATACGCCACCCCTC
TCCTCCTACTCCTGTCACCAGAACCCACAATGCTCCATTTTCTTCCTCTC
TCCCCTGTTCTTCCTCTTCTTTCGCCCAGCACCTCGCCCCTCTTCCTTCT
CCTCCTTCATCTTCCCCCTCTCGCTCCCCCGGCCTTCAGAACGCCACGGC
CGCCTTTCAGCGCCTGAGTCGCCTCCGTGCCCAGACCGAAGACGCCTTCC
AGAAGCTGCTCACCGACCTCCCCGTCCTCGAACCGTACCCCAGTCCTTCC
CCTGCCCTCGCTCCGCTCACCCCCGCCTTTGACCTGGTTGCGCTCAAGCG
GCAAGTGGGGGCCTTGCAGGACGAGCTGGCCTTGCGCTACACACACCAAG
AAGGTATGCACCGCCAGAATGTGAAGCTGTGGGAGCTCCTGCGGGCTGTG
TGTGACACACCGTCCTGGACAGCCGCTGAGGGGGAGGTCAACCTCGTGCA
TGCGGCCTTGCGCGAACGACAGGCAGAGGTGGAGACCCTGCAGCACTCTC
TCAAGGAATCGCAGACCGTCAAGGTGCGACTCTTTGCCGTGCGTGCGGAG
AGGGAGAAGGCCCGTGTCAATCTGAAGGTGGCACAAGAGGGTAAAGCCGA
GGCCTCTCGGGTACTGGCAGCTGTGATGGCGGACAACCAGGCGCTAGAAG
AGGAACTGGAGGAGCAGACGGCGGCAATGCAAGATCTGCAGCGGTATTTA
GCCAACTGTCAGGCCACACAGCAAGAGGAGCATCAAAGTCCTCGCGCACA
AGGCATTGGCTAGTCTAGCGCAGCATCGATGGCTGGCCCAGTATTGCCGT
CGCGTCCAGAAAAGGCAGGATGCGGTGCTCTTGCGGTTTTTTTGGGGCGC
CTGGCATCGGTACACCAAGCAA

protein sequence of jgi.p|Nanoce1779_2|341062

>mRNA_2813-protein ID=mRNA_2813-protein|Name=jgi.p|Nanoce1779_2|341062|organism=Nannochloropsis oceanica|type=polypeptide|length=376bp
MHKPSSTSTSTRHGTTRARPSAWERVQSAVPISTSQPSWEAPLRPRSPPP
WTMTSHQQEHEARWQQRQQRHHHLYRQPFEDGEDGENSHQPLPPSSSLAS
TAPSSPCPPLFTTSPPRIRHPSPPTPVTRTHNAPFSSSLPCSSSSFAQHL
APLPSPPSSSPSRSPGLQNATAAFQRLSRLRAQTEDAFQKLLTDLPVLEP
YPSPSPALAPLTPAFDLVALKRQVGALQDELALRYTHQEGMHRQNVKLWE
LLRAVCDTPSWTAAEGEVNLVHAALRERQAEVETLQHSLKESQTVKVRLF
AVRAEREKARVNLKVAQEGKAEASRVLAAVMADNQALEEELEEQTAAMQD
LQRYLANCQATQQEEHQSPRAQGIG*

mRNA from alignment at scaffold_5:1268546..1270560+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2813 ID=mRNA_2813|Name=jgi.p|Nanoce1779_2|341062|organism=Nannochloropsis oceanica|type=mRNA|length=2015bp|location=Sequence derived from alignment at scaffold_5:1268546..1270560+ (Nannochloropsis oceanica)
GTGGAATCTTTCCTCTTGGGATGATCCGTACCTAAAGGTGAGGGATTTGA
ATTGTAGAGTCGGGTTTCAAGTTGCATGAAGGCACATGAAGCCATGTCCT
GTTACATGCCAGAAGAATGCTGTCGAATATGTGTGCAAGCGAAAGGATGG
CAAGGAAAGGGGTAGGAAAAGGACACGTCACTGATCAGCGTATGGAGAAA
GGGAGAACGTTGTCAAGAAAGCGCGAACGACGACACTGGATGTAATGTGT
GTAAAGGGAGATAGGAACCAAAGCAGGACATCAGACAAGGCACATTAATG
ATCACAAGTACGTACTTACGTCGCAACAATCTCACATGGTGTACGGCAGG
GAACTAGCTGTACATGAGATGCCTTCTCCCCAGACAATACTCACCTTGCC
TTGGCCCTTCTCCAAGTTTCAACAACGCAATTTGAAAAACCAGTCGGCAG
TGGCATGGTGGTCTTGATGAAGGCCTCCTCCGCGGCAGTGCCCCCCCATG
GTAAGAAGCACGTTGCGCAAGGCGGGGTGGTAGAGGTAACTTGCGTACTC
ATCAAGTTTCCCGCTCCCTCCCTCTTATTCGTCATTGTCATCATAAGACT
ACGCTCCTGTGTACCATAAACAGCACAAACCCTCCTCAACCTCGACTAGC
ACAAGGCATGGGACGACGCGAGCTCGACCTTCAGCTTGGGAGCGTGTACA
GTCTGCCGTCCCAATCAGCACCTCACAACCAAGCTGGGAGGCTCCTCTTC
GGCCAAGGTCGCCTCCACCATGGACGATGACATCCCACCAGCAGGAGCAC
GAGGCGCGATGGCAGCAAAGGCAGCAGCGGCACCACCATCTCTACCGACA
GCCTTTTGAAGATGGAGAGGATGGAGAGAATTCTCATCAACCCTTGCCCC
CGTCATCGTCTTTGGCGTCAACAGCGCCTTCCTCGCCATGCCCACCTCTT
TTCACCACCTCTCCGCCTCGCATACGCCACCCCTCTCCTCCTACTCCTGT
CACCAGAACCCACAATGCTCCATTTTCTTCCTCTCTCCCCTGTTCTTCCT
CTTCTTTCGCCCAGCACCTCGCCCCTCTTCCTTCTCCTCCTTCATCTTCC
CCCTCTCGCTCCCCCGGCCTTCAGAACGCCACGGCCGCCTTTCAGCGCCT
GAGTCGCCTCCGTGCCCAGACCGAAGACGCCTTCCAGAAGCTGCTCACCG
ACCTCCCCGTCCTCGAACCGTACCCCAGTCCTTCCCCTGCCCTCGCTCCG
CTCACCCCCGCCTTTGACCTGGTTGCGCTCAAGCGGCAAGTGGGGGCCTT
GCAGGACGAGCTGGCCTTGCGCTACACACACCAAGAAGGTATGCACCGCC
AGAATGTGAAGCTGTGGGAGCTCCTGCGGGCTGTGTGTGACACACCGTCC
TGGACAGCCGCTGAGGGGGAGGTCAACCTCGTGCATGCGGCCTTGCGCGA
ACGACAGGCAGAGGTGGAGACCCTGCAGCACTCTCTCAAGGAATCGCAGA
CCGTCAAGGTGCGACTCTTTGCCGTGCGTGCGGAGAGGGAGAAGGCCCGT
GTCAATCTGAAGGTGGCACAAGAGGGTAAAGCCGAGGCCTCTCGGGTACT
GGCAGCTGTGATGGCGGACAACCAGGCGCTAGAAGAGGAACTGGAGGAGC
AGACGGCGGCAATGCAAGATCTGCAGCGGTATTTAGCCAACTGTCAGGCC
ACACAGCAAGAGGAGCATCTGGAGGACCTCGGGGAGGTTGCCGCCCGCTT
CTACGCCTCGCCCTCATCCGTATTCGCTCTCCGTCGGCGGCGGGAGGCCT
TTGCTCTCTTGCGTCTGGCCGCGCATCGCTCCCGACGGCTGCGGGAGCTT
GGGATGAGGTTCCAAGCGGCGGGCATCAAAGTCCTCGCGCACAAGGCATT
GGCTAGTCTAGCGCAGCATCGATGGCTGGCCCAGTATTGCCGTCGCGTCC
AGAAAAGGCAGGATGCGGTGCTCTTGCGGTTTTTTTGGGGCGCCTGGCAT
CGGTACACCAAGCAA

Coding sequence (CDS) from alignment at scaffold_5:1268546..1270560+

>mRNA_2813 ID=mRNA_2813|Name=jgi.p|Nanoce1779_2|341062|organism=Nannochloropsis oceanica|type=CDS|length=3384bp|location=Sequence derived from alignment at scaffold_5:1268546..1270560+ (Nannochloropsis oceanica)
ATGCACAAACCCTCCTCAACCTCGACTAGCACAAGGCATGGGACGACGCG
AGCTCGACCTTCAGCTTGGGAGCGTGTACAGTCTGCCGTCCCAATCAGCA
CCTCACAACCAAGCTGGGAGGCTCCTCTTCGGCCAAGGTCGCCTCCACCA
TGGACGATGACATCCCACCAGCAGGAGCACGAGGCGCGATGGCAGCAAAG
GCAGCAGCGGCACCACCATCTCTACCGACAGCCTTTTGAAGATGGAGAGG
ATGGAGAGAATTCTCATCAACCCTTGCCCCCGTCATCGTCTTTGGCGTCA
ACAGCGCCTTCCTCGCCATGCCCACCTCTTTTCACCACCTCTCCGCCTCG
CATACGCCACCCCTCTCCTCCTACTCCTGTCACCAGAACCCACAATGCTC
CATTTTCTTCCTCTCTCCCCTGTTCTTCCTCTTCTTTCGCCCAGCACCTC
GCCCCTCTTCCTTCTCCTCCTTCATCTTCCCCCTCTCGCTCCCCCGGCCT
TCAGAACGCCACGGCCGCCTTTCAGCGCCTGAGTCGCCTCCGTGCCCAGA
CCGAAGACGCCTTCCAGAAGCTGCTCACCGACCTCCCCGTCCTCGAACCG
TACCCCAGTCCTTCCCCTGCCCTCGCTCCGCTCACCCCCGCCTTTGACCT
GGTTGCGCTCAAGCGGCAAGTGGGGGCCTTGCAGGACGAGCTGGCCTTGC
GCTACACACACCAAGAAGGTATGCACCGCCAGAATGTGAAGCTGTGGGAG
CTCCTGCGGGCTGTGTGTGACACACCGTCCTGGACAGCCGCTGAGGGGGA
GGTCAACCTCGTGCATGCGGCCTTGCGCGAACGACAGGCAGAGGTGGAGA
CCCTGCAGCACTCTCTCAAGGAATCGCAGACCGTCAAGGTGCGACTCTTT
GCCGTGCGTGCGGAGAGGGAGAAGGCCCGTGTCAATCTGAAGGTGGCACA
AGAGGGTAAAGCCGAGGCCTCTCGGGTACTGGCAGCTGTGATGGCGGACA
ACCAGGCGCTAGAAGAGGAACTGGAGGAGCAGACGGCGGCAATGCAAGAT
CTGCAGCGGTATTTAGCCAACTGTCAGGCCACACAGCAAGAGGAGCATCA
AAGTCCTCGCGCACAAGGCATTGGCTAGATGCACAAACCCTCCTCAACCT
CGACTAGCACAAGGCATGGGACGACGCGAGCTCGACCTTCAGCTTGGGAG
CGTGTACAGTCTGCCGTCCCAATCAGCACCTCACAACCAAGCTGGGAGGC
TCCTCTTCGGCCAAGGTCGCCTCCACCATGGACGATGACATCCCACCAGC
AGGAGCACGAGGCGCGATGGCAGCAAAGGCAGCAGCGGCACCACCATCTC
TACCGACAGCCTTTTGAAGATGGAGAGGATGGAGAGAATTCTCATCAACC
CTTGCCCCCGTCATCGTCTTTGGCGTCAACAGCGCCTTCCTCGCCATGCC
CACCTCTTTTCACCACCTCTCCGCCTCGCATACGCCACCCCTCTCCTCCT
ACTCCTGTCACCAGAACCCACAATGCTCCATTTTCTTCCTCTCTCCCCTG
TTCTTCCTCTTCTTTCGCCCAGCACCTCGCCCCTCTTCCTTCTCCTCCTT
CATCTTCCCCCTCTCGCTCCCCCGGCCTTCAGAACGCCACGGCCGCCTTT
CAGCGCCTGAGTCGCCTCCGTGCCCAGACCGAAGACGCCTTCCAGAAGCT
GCTCACCGACCTCCCCGTCCTCGAACCGTACCCCAGTCCTTCCCCTGCCC
TCGCTCCGCTCACCCCCGCCTTTGACCTGGTTGCGCTCAAGCGGCAAGTG
GGGGCCTTGCAGGACGAGCTGGCCTTGCGCTACACACACCAAGAAGGTAT
GCACCGCCAGAATGTGAAGCTGTGGGAGCTCCTGCGGGCTGTGTGTGACA
CACCGTCCTGGACAGCCGCTGAGGGGGAGGTCAACCTCGTGCATGCGGCC
TTGCGCGAACGACAGGCAGAGGTGGAGACCCTGCAGCACTCTCTCAAGGA
ATCGCAGACCGTCAAGGTGCGACTCTTTGCCGTGCGTGCGGAGAGGGAGA
AGGCCCGTGTCAATCTGAAGGTGGCACAAGAGGGTAAAGCCGAGGCCTCT
CGGGTACTGGCAGCTGTGATGGCGGACAACCAGGCGCTAGAAGAGGAACT
GGAGGAGCAGACGGCGGCAATGCAAGATCTGCAGCGGTATTTAGCCAACT
GTCAGGCCACACAGCAAGAGGAGCATCAAAGTCCTCGCGCACAAGGCATT
GGCTAGATGCACAAACCCTCCTCAACCTCGACTAGCACAAGGCATGGGAC
GACGCGAGCTCGACCTTCAGCTTGGGAGCGTGTACAGTCTGCCGTCCCAA
TCAGCACCTCACAACCAAGCTGGGAGGCTCCTCTTCGGCCAAGGTCGCCT
CCACCATGGACGATGACATCCCACCAGCAGGAGCACGAGGCGCGATGGCA
GCAAAGGCAGCAGCGGCACCACCATCTCTACCGACAGCCTTTTGAAGATG
GAGAGGATGGAGAGAATTCTCATCAACCCTTGCCCCCGTCATCGTCTTTG
GCGTCAACAGCGCCTTCCTCGCCATGCCCACCTCTTTTCACCACCTCTCC
GCCTCGCATACGCCACCCCTCTCCTCCTACTCCTGTCACCAGAACCCACA
ATGCTCCATTTTCTTCCTCTCTCCCCTGTTCTTCCTCTTCTTTCGCCCAG
CACCTCGCCCCTCTTCCTTCTCCTCCTTCATCTTCCCCCTCTCGCTCCCC
CGGCCTTCAGAACGCCACGGCCGCCTTTCAGCGCCTGAGTCGCCTCCGTG
CCCAGACCGAAGACGCCTTCCAGAAGCTGCTCACCGACCTCCCCGTCCTC
GAACCGTACCCCAGTCCTTCCCCTGCCCTCGCTCCGCTCACCCCCGCCTT
TGACCTGGTTGCGCTCAAGCGGCAAGTGGGGGCCTTGCAGGACGAGCTGG
CCTTGCGCTACACACACCAAGAAGGTATGCACCGCCAGAATGTGAAGCTG
TGGGAGCTCCTGCGGGCTGTGTGTGACACACCGTCCTGGACAGCCGCTGA
GGGGGAGGTCAACCTCGTGCATGCGGCCTTGCGCGAACGACAGGCAGAGG
TGGAGACCCTGCAGCACTCTCTCAAGGAATCGCAGACCGTCAAGGTGCGA
CTCTTTGCCGTGCGTGCGGAGAGGGAGAAGGCCCGTGTCAATCTGAAGGT
GGCACAAGAGGGTAAAGCCGAGGCCTCTCGGGTACTGGCAGCTGTGATGG
CGGACAACCAGGCGCTAGAAGAGGAACTGGAGGAGCAGACGGCGGCAATG
CAAGATCTGCAGCGGTATTTAGCCAACTGTCAGGCCACACAGCAAGAGGA
GCATCAAAGTCCTCGCGCACAAGGCATTGGCTAG

Synonyms

Publications