Properties
Property Name | Value |
TranscriptId | 552758 |
Track | FilteredModels2 |
ProteinId | 552672 |
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_5 | supercontig | scaffold_5:1265139..1268453 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_2812 ID=mRNA_2812|Name=jgi.p|Nanoce1779_2|552672|organism=Nannochloropsis oceanica|type=mRNA|length=3315bp ACCACGTCTCTGTTGGGTCGTGTGCTTTGTTTCGACGCTGTCATATCCTT GTTTATCCCCTATGCGCGTCTTCATGACAACATGTAGTACTGCTGCATGG CTAAGGCACTGTGCAATCCTCGCTCGGCTTCACAGTCAACTCGACGGGCC GGAGGTCGGCACAGTTTTGCAACTATTTGTCCTCATGAGCCATCTTTGAC GGACCAAATCCCTTGCCTGCCTTCATGACAAGGTTCCATGACTTTGTCTT ATACTATGCATGGTTGACTTGGCCTCTCCCATCTCACATCTGCCTTGTAA TGTCCTTCCAAGGGCAGACAGACGTGACGTTGGGGGTACGTATCGGCTTC TCCGTAGGAGCACTTTTACGGCTATGATTTTCATCACTTACTTACCACTC ATCTTGATTTTCATCACTTGCTTACCCCTCATCTCGACGCTAACACCCCC ATACACACATACTACAGAACAAGACTGATACACATGACGGTCTCAACCTG CCGGCCCGCTTCCTCCTCCCTCTCTTCATCAGTCTGCCCCTACTACTACC ATGCCGACGACGAAACACCTCCGGCAAGCGCTCAAGTCGGGCCCCCGAAG CAACTCCATAGCCCCCAACAGCACCTTAAAAAGACGATAGCAAACTATCC TTGCCCCACGGGTGGATATTTACCCCTGCTGAGTATCCCCCCGAAGAGAT TTCTCCTTCCTTATCCTCCCTCCTCGGCTTCGACGGCTGTAGCTGCTGCG ACTGCAGAGCGAAGCTCAAATTCCCCCCCCGCCACACCTACCCATTGTTC GAGAATGGTCTTGGCCCCTGCTCCTCTGGACCTGCCCGCCCACATGCCCA CGGCCAGCATCAGCGTCCTTTCTGTACGTCTTTCCCCTAGCCAGGCACCT AGCCGTCGCTCGTGCCTGCTGTCCGCCGCACCCCGACGACAACAACAAGA CAACAACGACAGCAGCTGTAGTAGCAGTAGCAACAGTAGCGGCAGCAGTA GCAGGGCCTATCTACTCCTGAATCAGCTGACAAAGGCCAAAGACCGCGTC CGACTTTGGCTTGCATTAGTCCTGCGGGAAGAGGAAGGGGGGGACGGGAG CGAGGAAGTTGTTTACGCACCTGCAAGCCTCGAGAATGTAGTCATAAAGG AGTCAGACACGCGTTTTATTCGTCAGTATGGCCGACTGTGGGGGGAAGAC CCTGTGGCAGAAGTGGCGGCCTTGATCCGCGTTCAGGAACATCAGCAGCA GCCAGGGCACCCGAACATCGTAGCCATGCAAGCAGCGTTTGAAGGCGAGG GCGTGAGTCAGGGGTTGCTCTTTATGGTCTTGCCCTATCTCTCGGGCAGC GAGCTGTTCTACCAGGTGACCGAGGCCAAGGGGCAGCAGGGACTGGGGGA AGAGGCGACACGGCCCATTCTGCGACAGGTGCTGGCAGGGTTGCTGCACT TGAAGCAGGCTCACGGTATCCGGCACGGAGACGTCTCGCCCGAGAATGTG ATGGTGGCACCCGACGGAAATGTCACACTGATTGACCTAGGTATGGCCGA ATGCCTTCCTTCCCCCCCGTCCTCCCATCCTTCCTCCTCGTCCTCGTCCT CGTCCCCTTCCTCTGTCCTTCTGGAAGCCCGGCCGCGGCGGGGGAAGAAG CAGTACATGGCGCCAGAGATCTACGAGGAGAGGGAATACGATCCCTTCGC GGCTGACGTGTGGGCATTGGGCGCCTTGCTTTACGTGTGCTGGACCGGAT GCACCATATTCAAATCGGCCTCCGACCCGCACTTCAGGAGCTTGAAGGAG GGGGGAAAGGAGGGCGGGTTGAGGCGGCTCTTGGCGGAGCGGGAGCGGCA GGGGAGCACGAGGGTGTTGTCGACGGAGGCGAAGGAGCTGTTGGGCGGAA TGATGGCCTGGGACCGGGAGAAGAGGATGACTTTGGAAGAGGTGGCCACG CACCCGTGGCTGGCGGAAGAAAAGGTGGTGGTGCAGAGGGAGGAGAAGGA GGAGACAGGGGAATGCCCGGGGAAGAAGGAGACGCAGCATTTGACGTCTG ATTGGTCGTTAGCGTCCATACTACCTGCGTTTGAAAGACAGGAGTTGAAC ACGGAGGTGAGGGAGAGTAGTCAAGAGGAGGGGCGAGAAAGGGAGGACAG GAGGGAGGACCGCCTGCATGCCTCGCTCTGGGCCTCCACATTTGCCTCGT TCAACGAAGATGACGTGACCGACGCGGTAGAGAACGAGAAGGAGGAGAAG GAGGAGAAAATTAACTATCCCTGCGCTCCCTCCGCGACCTGCGACTCGAC CACCCCTTCCAAGCAGCGCAGCAACAACTGCGACCCCGGGGATCCGGACA ACAGCCTGGCCTCTCTCCGGTCCTTGCACCATCTGGAGAGCTTTCAAAAC AACTACAGCAGCAGCAGCAGCAGCAGCAGCAATAACGACAACAACATAAT CGAAATCAACAATAACGACTATGACGACGACTTTGACAGTATTAATAATG ACGAAGACCAGGGATGCCGCCTCCCCTCCTCTCGAGCGATGTCTTCATCT TCTCTCTGCAATCATTCGATGCCTTCATGCCGCTTCGTAGCGAATGAGGA TGAAAGGGAGGGCGAGGAGAAAAAGGGCAAGGAATTGTTTGAGCAGGAGG AGGAGGAGGATAAGCTGACAGTATCGGTATCTTTCTCTTCCTCCATCACG TCCTTTTGTTCCGTCGCTCCGCAACTGTTTGAAGAGGCGCAAAAAATGCT GCAGACAGGCCTCTGAGGGGAAGATACAAATATGTTTATGTGTGCACGTG TATGCTTAAAGAAATTTTAAACTCATTTGTCATTACTGAGTAGTTTCAGG TTGTAACCAGGTCCGGATAGGAATCGAAGTAGAGAATGGGCGTGGATCAA TGCATGTCTGGTCGTCATATAAAGAGTGATGGATATATTGACCGGTAATA GCAATGTGGGAGTTCCCTAATACTTGTACAGGAAAAGCGGTTGAAGAAGT TTCGATGCCCAAATGATAAACGATATTCTTGTCTACCTCCCGTGTTGTCT CTGTGTTGGAGAAAAGGGCGAAGGCTTAATTTCGTGCGCGATGTGTGAAT GTCTGCGCGTGTAACCGCATCGTTTAAATGATAAAGAGGCAGAGCGATAA AGGTGTGATAAAAGGAAAAAGCTTCCATCGTGAGGATAGGAGGGGGAGGG GAACGGGGGTGAGATTGCCGAGACAGTCTCGCCCAGCTCCTTGCTTTTGA ATGGAAGAGTATTCGAGGGGACATCGAATTCGACAACAAAAATAAATCGT GAATAACCCCGCATG back to topprotein sequence of jgi.p|Nanoce1779_2|552672 >mRNA_2812-protein ID=mRNA_2812-protein|Name=jgi.p|Nanoce1779_2|552672|organism=Nannochloropsis oceanica|type=polypeptide|length=761bp MTVSTCRPASSSLSSSVCPYYYHADDETPPASAQVGPPKQLHSPQQHLKK TIANYPCPTGGYLPLLSIPPKRFLLPYPPSSASTAVAAATAERSSNSPPA TPTHCSRMVLAPAPLDLPAHMPTASISVLSVRLSPSQAPSRRSCLLSAAP RRQQQDNNDSSCSSSSNSSGSSSRAYLLLNQLTKAKDRVRLWLALVLREE EGGDGSEEVVYAPASLENVVIKESDTRFIRQYGRLWGEDPVAEVAALIRV QEHQQQPGHPNIVAMQAAFEGEGVSQGLLFMVLPYLSGSELFYQVTEAKG QQGLGEEATRPILRQVLAGLLHLKQAHGIRHGDVSPENVMVAPDGNVTLI DLGMAECLPSPPSSHPSSSSSSSSPSSVLLEARPRRGKKQYMAPEIYEER EYDPFAADVWALGALLYVCWTGCTIFKSASDPHFRSLKEGGKEGGLRRLL AERERQGSTRVLSTEAKELLGGMMAWDREKRMTLEEVATHPWLAEEKVVV QREEKEETGECPGKKETQHLTSDWSLASILPAFERQELNTEVRESSQEEG REREDRREDRLHASLWASTFASFNEDDVTDAVENEKEEKEEKINYPCAPS ATCDSTTPSKQRSNNCDPGDPDNSLASLRSLHHLESFQNNYSSSSSSSSN NDNNIIEINNNDYDDDFDSINNDEDQGCRLPSSRAMSSSSLCNHSMPSCR FVANEDEREGEEKKGKELFEQEEEEDKLTVSVSFSSSITSFCSVAPQLFE EAQKMLQTGL* back to topmRNA from alignment at scaffold_5:1265139..1268453- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_2812 ID=mRNA_2812|Name=jgi.p|Nanoce1779_2|552672|organism=Nannochloropsis oceanica|type=mRNA|length=3315bp|location=Sequence derived from alignment at scaffold_5:1265139..1268453- (Nannochloropsis oceanica) ACCACGTCTCTGTTGGGTCGTGTGCTTTGTTTCGACGCTGTCATATCCTT
GTTTATCCCCTATGCGCGTCTTCATGACAACATGTAGTACTGCTGCATGG
CTAAGGCACTGTGCAATCCTCGCTCGGCTTCACAGTCAACTCGACGGGCC
GGAGGTCGGCACAGTTTTGCAACTATTTGTCCTCATGAGCCATCTTTGAC
GGACCAAATCCCTTGCCTGCCTTCATGACAAGGTTCCATGACTTTGTCTT
ATACTATGCATGGTTGACTTGGCCTCTCCCATCTCACATCTGCCTTGTAA
TGTCCTTCCAAGGGCAGACAGACGTGACGTTGGGGGTACGTATCGGCTTC
TCCGTAGGAGCACTTTTACGGCTATGATTTTCATCACTTACTTACCACTC
ATCTTGATTTTCATCACTTGCTTACCCCTCATCTCGACGCTAACACCCCC
ATACACACATACTACAGAACAAGACTGATACACATGACGGTCTCAACCTG
CCGGCCCGCTTCCTCCTCCCTCTCTTCATCAGTCTGCCCCTACTACTACC
ATGCCGACGACGAAACACCTCCGGCAAGCGCTCAAGTCGGGCCCCCGAAG
CAACTCCATAGCCCCCAACAGCACCTTAAAAAGACGATAGCAAACTATCC
TTGCCCCACGGGTGGATATTTACCCCTGCTGAGTATCCCCCCGAAGAGAT
TTCTCCTTCCTTATCCTCCCTCCTCGGCTTCGACGGCTGTAGCTGCTGCG
ACTGCAGAGCGAAGCTCAAATTCCCCCCCCGCCACACCTACCCATTGTTC
GAGAATGGTCTTGGCCCCTGCTCCTCTGGACCTGCCCGCCCACATGCCCA
CGGCCAGCATCAGCGTCCTTTCTGTACGTCTTTCCCCTAGCCAGGCACCT
AGCCGTCGCTCGTGCCTGCTGTCCGCCGCACCCCGACGACAACAACAAGA
CAACAACGACAGCAGCTGTAGTAGCAGTAGCAACAGTAGCGGCAGCAGTA
GCAGGGCCTATCTACTCCTGAATCAGCTGACAAAGGCCAAAGACCGCGTC
CGACTTTGGCTTGCATTAGTCCTGCGGGAAGAGGAAGGGGGGGACGGGAG
CGAGGAAGTTGTTTACGCACCTGCAAGCCTCGAGAATGTAGTCATAAAGG
AGTCAGACACGCGTTTTATTCGTCAGTATGGCCGACTGTGGGGGGAAGAC
CCTGTGGCAGAAGTGGCGGCCTTGATCCGCGTTCAGGAACATCAGCAGCA
GCCAGGGCACCCGAACATCGTAGCCATGCAAGCAGCGTTTGAAGGCGAGG
GCGTGAGTCAGGGGTTGCTCTTTATGGTCTTGCCCTATCTCTCGGGCAGC
GAGCTGTTCTACCAGGTGACCGAGGCCAAGGGGCAGCAGGGACTGGGGGA
AGAGGCGACACGGCCCATTCTGCGACAGGTGCTGGCAGGGTTGCTGCACT
TGAAGCAGGCTCACGGTATCCGGCACGGAGACGTCTCGCCCGAGAATGTG
ATGGTGGCACCCGACGGAAATGTCACACTGATTGACCTAGGTATGGCCGA
ATGCCTTCCTTCCCCCCCGTCCTCCCATCCTTCCTCCTCGTCCTCGTCCT
CGTCCCCTTCCTCTGTCCTTCTGGAAGCCCGGCCGCGGCGGGGGAAGAAG
CAGTACATGGCGCCAGAGATCTACGAGGAGAGGGAATACGATCCCTTCGC
GGCTGACGTGTGGGCATTGGGCGCCTTGCTTTACGTGTGCTGGACCGGAT
GCACCATATTCAAATCGGCCTCCGACCCGCACTTCAGGAGCTTGAAGGAG
GGGGGAAAGGAGGGCGGGTTGAGGCGGCTCTTGGCGGAGCGGGAGCGGCA
GGGGAGCACGAGGGTGTTGTCGACGGAGGCGAAGGAGCTGTTGGGCGGAA
TGATGGCCTGGGACCGGGAGAAGAGGATGACTTTGGAAGAGGTGGCCACG
CACCCGTGGCTGGCGGAAGAAAAGGTGGTGGTGCAGAGGGAGGAGAAGGA
GGAGACAGGGGAATGCCCGGGGAAGAAGGAGACGCAGCATTTGACGTCTG
ATTGGTCGTTAGCGTCCATACTACCTGCGTTTGAAAGACAGGAGTTGAAC
ACGGAGGTGAGGGAGAGTAGTCAAGAGGAGGGGCGAGAAAGGGAGGACAG
GAGGGAGGACCGCCTGCATGCCTCGCTCTGGGCCTCCACATTTGCCTCGT
TCAACGAAGATGACGTGACCGACGCGGTAGAGAACGAGAAGGAGGAGAAG
GAGGAGAAAATTAACTATCCCTGCGCTCCCTCCGCGACCTGCGACTCGAC
CACCCCTTCCAAGCAGCGCAGCAACAACTGCGACCCCGGGGATCCGGACA
ACAGCCTGGCCTCTCTCCGGTCCTTGCACCATCTGGAGAGCTTTCAAAAC
AACTACAGCAGCAGCAGCAGCAGCAGCAGCAATAACGACAACAACATAAT
CGAAATCAACAATAACGACTATGACGACGACTTTGACAGTATTAATAATG
ACGAAGACCAGGGATGCCGCCTCCCCTCCTCTCGAGCGATGTCTTCATCT
TCTCTCTGCAATCATTCGATGCCTTCATGCCGCTTCGTAGCGAATGAGGA
TGAAAGGGAGGGCGAGGAGAAAAAGGGCAAGGAATTGTTTGAGCAGGAGG
AGGAGGAGGATAAGCTGACAGTATCGGTATCTTTCTCTTCCTCCATCACG
TCCTTTTGTTCCGTCGCTCCGCAACTGTTTGAAGAGGCGCAAAAAATGCT
GCAGACAGGCCTCTGAGGGGAAGATACAAATATGTTTATGTGTGCACGTG
TATGCTTAAAGAAATTTTAAACTCATTTGTCATTACTGAGTAGTTTCAGG
TTGTAACCAGGTCCGGATAGGAATCGAAGTAGAGAATGGGCGTGGATCAA
TGCATGTCTGGTCGTCATATAAAGAGTGATGGATATATTGACCGGTAATA
GCAATGTGGGAGTTCCCTAATACTTGTACAGGAAAAGCGGTTGAAGAAGT
TTCGATGCCCAAATGATAAACGATATTCTTGTCTACCTCCCGTGTTGTCT
CTGTGTTGGAGAAAAGGGCGAAGGCTTAATTTCGTGCGCGATGTGTGAAT
GTCTGCGCGTGTAACCGCATCGTTTAAATGATAAAGAGGCAGAGCGATAA
AGGTGTGATAAAAGGAAAAAGCTTCCATCGTGAGGATAGGAGGGGGAGGG
GAACGGGGGTGAGATTGCCGAGACAGTCTCGCCCAGCTCCTTGCTTTTGA
ATGGAAGAGTATTCGAGGGGACATCGAATTCGACAACAAAAATAAATCGT
GAATAACCCCGCATG back to topCoding sequence (CDS) from alignment at scaffold_5:1265139..1268453- >mRNA_2812 ID=mRNA_2812|Name=jgi.p|Nanoce1779_2|552672|organism=Nannochloropsis oceanica|type=CDS|length=2283bp|location=Sequence derived from alignment at scaffold_5:1265139..1268453- (Nannochloropsis oceanica) ATGACGGTCTCAACCTGCCGGCCCGCTTCCTCCTCCCTCTCTTCATCAGT CTGCCCCTACTACTACCATGCCGACGACGAAACACCTCCGGCAAGCGCTC AAGTCGGGCCCCCGAAGCAACTCCATAGCCCCCAACAGCACCTTAAAAAG ACGATAGCAAACTATCCTTGCCCCACGGGTGGATATTTACCCCTGCTGAG TATCCCCCCGAAGAGATTTCTCCTTCCTTATCCTCCCTCCTCGGCTTCGA CGGCTGTAGCTGCTGCGACTGCAGAGCGAAGCTCAAATTCCCCCCCCGCC ACACCTACCCATTGTTCGAGAATGGTCTTGGCCCCTGCTCCTCTGGACCT GCCCGCCCACATGCCCACGGCCAGCATCAGCGTCCTTTCTGTACGTCTTT CCCCTAGCCAGGCACCTAGCCGTCGCTCGTGCCTGCTGTCCGCCGCACCC CGACGACAACAACAAGACAACAACGACAGCAGCTGTAGTAGCAGTAGCAA CAGTAGCGGCAGCAGTAGCAGGGCCTATCTACTCCTGAATCAGCTGACAA AGGCCAAAGACCGCGTCCGACTTTGGCTTGCATTAGTCCTGCGGGAAGAG GAAGGGGGGGACGGGAGCGAGGAAGTTGTTTACGCACCTGCAAGCCTCGA GAATGTAGTCATAAAGGAGTCAGACACGCGTTTTATTCGTCAGTATGGCC GACTGTGGGGGGAAGACCCTGTGGCAGAAGTGGCGGCCTTGATCCGCGTT CAGGAACATCAGCAGCAGCCAGGGCACCCGAACATCGTAGCCATGCAAGC AGCGTTTGAAGGCGAGGGCGTGAGTCAGGGGTTGCTCTTTATGGTCTTGC CCTATCTCTCGGGCAGCGAGCTGTTCTACCAGGTGACCGAGGCCAAGGGG CAGCAGGGACTGGGGGAAGAGGCGACACGGCCCATTCTGCGACAGGTGCT GGCAGGGTTGCTGCACTTGAAGCAGGCTCACGGTATCCGGCACGGAGACG TCTCGCCCGAGAATGTGATGGTGGCACCCGACGGAAATGTCACACTGATT GACCTAGGTATGGCCGAATGCCTTCCTTCCCCCCCGTCCTCCCATCCTTC CTCCTCGTCCTCGTCCTCGTCCCCTTCCTCTGTCCTTCTGGAAGCCCGGC CGCGGCGGGGGAAGAAGCAGTACATGGCGCCAGAGATCTACGAGGAGAGG GAATACGATCCCTTCGCGGCTGACGTGTGGGCATTGGGCGCCTTGCTTTA CGTGTGCTGGACCGGATGCACCATATTCAAATCGGCCTCCGACCCGCACT TCAGGAGCTTGAAGGAGGGGGGAAAGGAGGGCGGGTTGAGGCGGCTCTTG GCGGAGCGGGAGCGGCAGGGGAGCACGAGGGTGTTGTCGACGGAGGCGAA GGAGCTGTTGGGCGGAATGATGGCCTGGGACCGGGAGAAGAGGATGACTT TGGAAGAGGTGGCCACGCACCCGTGGCTGGCGGAAGAAAAGGTGGTGGTG CAGAGGGAGGAGAAGGAGGAGACAGGGGAATGCCCGGGGAAGAAGGAGAC GCAGCATTTGACGTCTGATTGGTCGTTAGCGTCCATACTACCTGCGTTTG AAAGACAGGAGTTGAACACGGAGGTGAGGGAGAGTAGTCAAGAGGAGGGG CGAGAAAGGGAGGACAGGAGGGAGGACCGCCTGCATGCCTCGCTCTGGGC CTCCACATTTGCCTCGTTCAACGAAGATGACGTGACCGACGCGGTAGAGA ACGAGAAGGAGGAGAAGGAGGAGAAAATTAACTATCCCTGCGCTCCCTCC GCGACCTGCGACTCGACCACCCCTTCCAAGCAGCGCAGCAACAACTGCGA CCCCGGGGATCCGGACAACAGCCTGGCCTCTCTCCGGTCCTTGCACCATC TGGAGAGCTTTCAAAACAACTACAGCAGCAGCAGCAGCAGCAGCAGCAAT AACGACAACAACATAATCGAAATCAACAATAACGACTATGACGACGACTT TGACAGTATTAATAATGACGAAGACCAGGGATGCCGCCTCCCCTCCTCTC GAGCGATGTCTTCATCTTCTCTCTGCAATCATTCGATGCCTTCATGCCGC TTCGTAGCGAATGAGGATGAAAGGGAGGGCGAGGAGAAAAAGGGCAAGGA ATTGTTTGAGCAGGAGGAGGAGGAGGATAAGCTGACAGTATCGGTATCTT TCTCTTCCTCCATCACGTCCTTTTGTTCCGTCGCTCCGCAACTGTTTGAA GAGGCGCAAAAAATGCTGCAGACAGGCCTCTGA back to top
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