jgi.p|Nanoce1779_2|552672, mRNA_2812 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|552672
Unique NamemRNA_2812
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length3315
Alignment locationscaffold_5:1265139..1268453 -

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Properties
Property NameValue
TranscriptId552758
TrackFilteredModels2
ProteinId552672
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:1265139..1268453 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|552672gene_2812Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|552672mRNA_2812-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2812CDS_2812Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2812 ID=mRNA_2812|Name=jgi.p|Nanoce1779_2|552672|organism=Nannochloropsis oceanica|type=mRNA|length=3315bp
ACCACGTCTCTGTTGGGTCGTGTGCTTTGTTTCGACGCTGTCATATCCTT
GTTTATCCCCTATGCGCGTCTTCATGACAACATGTAGTACTGCTGCATGG
CTAAGGCACTGTGCAATCCTCGCTCGGCTTCACAGTCAACTCGACGGGCC
GGAGGTCGGCACAGTTTTGCAACTATTTGTCCTCATGAGCCATCTTTGAC
GGACCAAATCCCTTGCCTGCCTTCATGACAAGGTTCCATGACTTTGTCTT
ATACTATGCATGGTTGACTTGGCCTCTCCCATCTCACATCTGCCTTGTAA
TGTCCTTCCAAGGGCAGACAGACGTGACGTTGGGGGTACGTATCGGCTTC
TCCGTAGGAGCACTTTTACGGCTATGATTTTCATCACTTACTTACCACTC
ATCTTGATTTTCATCACTTGCTTACCCCTCATCTCGACGCTAACACCCCC
ATACACACATACTACAGAACAAGACTGATACACATGACGGTCTCAACCTG
CCGGCCCGCTTCCTCCTCCCTCTCTTCATCAGTCTGCCCCTACTACTACC
ATGCCGACGACGAAACACCTCCGGCAAGCGCTCAAGTCGGGCCCCCGAAG
CAACTCCATAGCCCCCAACAGCACCTTAAAAAGACGATAGCAAACTATCC
TTGCCCCACGGGTGGATATTTACCCCTGCTGAGTATCCCCCCGAAGAGAT
TTCTCCTTCCTTATCCTCCCTCCTCGGCTTCGACGGCTGTAGCTGCTGCG
ACTGCAGAGCGAAGCTCAAATTCCCCCCCCGCCACACCTACCCATTGTTC
GAGAATGGTCTTGGCCCCTGCTCCTCTGGACCTGCCCGCCCACATGCCCA
CGGCCAGCATCAGCGTCCTTTCTGTACGTCTTTCCCCTAGCCAGGCACCT
AGCCGTCGCTCGTGCCTGCTGTCCGCCGCACCCCGACGACAACAACAAGA
CAACAACGACAGCAGCTGTAGTAGCAGTAGCAACAGTAGCGGCAGCAGTA
GCAGGGCCTATCTACTCCTGAATCAGCTGACAAAGGCCAAAGACCGCGTC
CGACTTTGGCTTGCATTAGTCCTGCGGGAAGAGGAAGGGGGGGACGGGAG
CGAGGAAGTTGTTTACGCACCTGCAAGCCTCGAGAATGTAGTCATAAAGG
AGTCAGACACGCGTTTTATTCGTCAGTATGGCCGACTGTGGGGGGAAGAC
CCTGTGGCAGAAGTGGCGGCCTTGATCCGCGTTCAGGAACATCAGCAGCA
GCCAGGGCACCCGAACATCGTAGCCATGCAAGCAGCGTTTGAAGGCGAGG
GCGTGAGTCAGGGGTTGCTCTTTATGGTCTTGCCCTATCTCTCGGGCAGC
GAGCTGTTCTACCAGGTGACCGAGGCCAAGGGGCAGCAGGGACTGGGGGA
AGAGGCGACACGGCCCATTCTGCGACAGGTGCTGGCAGGGTTGCTGCACT
TGAAGCAGGCTCACGGTATCCGGCACGGAGACGTCTCGCCCGAGAATGTG
ATGGTGGCACCCGACGGAAATGTCACACTGATTGACCTAGGTATGGCCGA
ATGCCTTCCTTCCCCCCCGTCCTCCCATCCTTCCTCCTCGTCCTCGTCCT
CGTCCCCTTCCTCTGTCCTTCTGGAAGCCCGGCCGCGGCGGGGGAAGAAG
CAGTACATGGCGCCAGAGATCTACGAGGAGAGGGAATACGATCCCTTCGC
GGCTGACGTGTGGGCATTGGGCGCCTTGCTTTACGTGTGCTGGACCGGAT
GCACCATATTCAAATCGGCCTCCGACCCGCACTTCAGGAGCTTGAAGGAG
GGGGGAAAGGAGGGCGGGTTGAGGCGGCTCTTGGCGGAGCGGGAGCGGCA
GGGGAGCACGAGGGTGTTGTCGACGGAGGCGAAGGAGCTGTTGGGCGGAA
TGATGGCCTGGGACCGGGAGAAGAGGATGACTTTGGAAGAGGTGGCCACG
CACCCGTGGCTGGCGGAAGAAAAGGTGGTGGTGCAGAGGGAGGAGAAGGA
GGAGACAGGGGAATGCCCGGGGAAGAAGGAGACGCAGCATTTGACGTCTG
ATTGGTCGTTAGCGTCCATACTACCTGCGTTTGAAAGACAGGAGTTGAAC
ACGGAGGTGAGGGAGAGTAGTCAAGAGGAGGGGCGAGAAAGGGAGGACAG
GAGGGAGGACCGCCTGCATGCCTCGCTCTGGGCCTCCACATTTGCCTCGT
TCAACGAAGATGACGTGACCGACGCGGTAGAGAACGAGAAGGAGGAGAAG
GAGGAGAAAATTAACTATCCCTGCGCTCCCTCCGCGACCTGCGACTCGAC
CACCCCTTCCAAGCAGCGCAGCAACAACTGCGACCCCGGGGATCCGGACA
ACAGCCTGGCCTCTCTCCGGTCCTTGCACCATCTGGAGAGCTTTCAAAAC
AACTACAGCAGCAGCAGCAGCAGCAGCAGCAATAACGACAACAACATAAT
CGAAATCAACAATAACGACTATGACGACGACTTTGACAGTATTAATAATG
ACGAAGACCAGGGATGCCGCCTCCCCTCCTCTCGAGCGATGTCTTCATCT
TCTCTCTGCAATCATTCGATGCCTTCATGCCGCTTCGTAGCGAATGAGGA
TGAAAGGGAGGGCGAGGAGAAAAAGGGCAAGGAATTGTTTGAGCAGGAGG
AGGAGGAGGATAAGCTGACAGTATCGGTATCTTTCTCTTCCTCCATCACG
TCCTTTTGTTCCGTCGCTCCGCAACTGTTTGAAGAGGCGCAAAAAATGCT
GCAGACAGGCCTCTGAGGGGAAGATACAAATATGTTTATGTGTGCACGTG
TATGCTTAAAGAAATTTTAAACTCATTTGTCATTACTGAGTAGTTTCAGG
TTGTAACCAGGTCCGGATAGGAATCGAAGTAGAGAATGGGCGTGGATCAA
TGCATGTCTGGTCGTCATATAAAGAGTGATGGATATATTGACCGGTAATA
GCAATGTGGGAGTTCCCTAATACTTGTACAGGAAAAGCGGTTGAAGAAGT
TTCGATGCCCAAATGATAAACGATATTCTTGTCTACCTCCCGTGTTGTCT
CTGTGTTGGAGAAAAGGGCGAAGGCTTAATTTCGTGCGCGATGTGTGAAT
GTCTGCGCGTGTAACCGCATCGTTTAAATGATAAAGAGGCAGAGCGATAA
AGGTGTGATAAAAGGAAAAAGCTTCCATCGTGAGGATAGGAGGGGGAGGG
GAACGGGGGTGAGATTGCCGAGACAGTCTCGCCCAGCTCCTTGCTTTTGA
ATGGAAGAGTATTCGAGGGGACATCGAATTCGACAACAAAAATAAATCGT
GAATAACCCCGCATG
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protein sequence of jgi.p|Nanoce1779_2|552672

>mRNA_2812-protein ID=mRNA_2812-protein|Name=jgi.p|Nanoce1779_2|552672|organism=Nannochloropsis oceanica|type=polypeptide|length=761bp
MTVSTCRPASSSLSSSVCPYYYHADDETPPASAQVGPPKQLHSPQQHLKK
TIANYPCPTGGYLPLLSIPPKRFLLPYPPSSASTAVAAATAERSSNSPPA
TPTHCSRMVLAPAPLDLPAHMPTASISVLSVRLSPSQAPSRRSCLLSAAP
RRQQQDNNDSSCSSSSNSSGSSSRAYLLLNQLTKAKDRVRLWLALVLREE
EGGDGSEEVVYAPASLENVVIKESDTRFIRQYGRLWGEDPVAEVAALIRV
QEHQQQPGHPNIVAMQAAFEGEGVSQGLLFMVLPYLSGSELFYQVTEAKG
QQGLGEEATRPILRQVLAGLLHLKQAHGIRHGDVSPENVMVAPDGNVTLI
DLGMAECLPSPPSSHPSSSSSSSSPSSVLLEARPRRGKKQYMAPEIYEER
EYDPFAADVWALGALLYVCWTGCTIFKSASDPHFRSLKEGGKEGGLRRLL
AERERQGSTRVLSTEAKELLGGMMAWDREKRMTLEEVATHPWLAEEKVVV
QREEKEETGECPGKKETQHLTSDWSLASILPAFERQELNTEVRESSQEEG
REREDRREDRLHASLWASTFASFNEDDVTDAVENEKEEKEEKINYPCAPS
ATCDSTTPSKQRSNNCDPGDPDNSLASLRSLHHLESFQNNYSSSSSSSSN
NDNNIIEINNNDYDDDFDSINNDEDQGCRLPSSRAMSSSSLCNHSMPSCR
FVANEDEREGEEKKGKELFEQEEEEDKLTVSVSFSSSITSFCSVAPQLFE
EAQKMLQTGL*
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mRNA from alignment at scaffold_5:1265139..1268453-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2812 ID=mRNA_2812|Name=jgi.p|Nanoce1779_2|552672|organism=Nannochloropsis oceanica|type=mRNA|length=3315bp|location=Sequence derived from alignment at scaffold_5:1265139..1268453- (Nannochloropsis oceanica)
ACCACGTCTCTGTTGGGTCGTGTGCTTTGTTTCGACGCTGTCATATCCTT GTTTATCCCCTATGCGCGTCTTCATGACAACATGTAGTACTGCTGCATGG CTAAGGCACTGTGCAATCCTCGCTCGGCTTCACAGTCAACTCGACGGGCC GGAGGTCGGCACAGTTTTGCAACTATTTGTCCTCATGAGCCATCTTTGAC GGACCAAATCCCTTGCCTGCCTTCATGACAAGGTTCCATGACTTTGTCTT ATACTATGCATGGTTGACTTGGCCTCTCCCATCTCACATCTGCCTTGTAA TGTCCTTCCAAGGGCAGACAGACGTGACGTTGGGGGTACGTATCGGCTTC TCCGTAGGAGCACTTTTACGGCTATGATTTTCATCACTTACTTACCACTC ATCTTGATTTTCATCACTTGCTTACCCCTCATCTCGACGCTAACACCCCC ATACACACATACTACAGAACAAGACTGATACACATGACGGTCTCAACCTG CCGGCCCGCTTCCTCCTCCCTCTCTTCATCAGTCTGCCCCTACTACTACC ATGCCGACGACGAAACACCTCCGGCAAGCGCTCAAGTCGGGCCCCCGAAG CAACTCCATAGCCCCCAACAGCACCTTAAAAAGACGATAGCAAACTATCC TTGCCCCACGGGTGGATATTTACCCCTGCTGAGTATCCCCCCGAAGAGAT TTCTCCTTCCTTATCCTCCCTCCTCGGCTTCGACGGCTGTAGCTGCTGCG ACTGCAGAGCGAAGCTCAAATTCCCCCCCCGCCACACCTACCCATTGTTC GAGAATGGTCTTGGCCCCTGCTCCTCTGGACCTGCCCGCCCACATGCCCA CGGCCAGCATCAGCGTCCTTTCTGTACGTCTTTCCCCTAGCCAGGCACCT AGCCGTCGCTCGTGCCTGCTGTCCGCCGCACCCCGACGACAACAACAAGA CAACAACGACAGCAGCTGTAGTAGCAGTAGCAACAGTAGCGGCAGCAGTA GCAGGGCCTATCTACTCCTGAATCAGCTGACAAAGGCCAAAGACCGCGTC CGACTTTGGCTTGCATTAGTCCTGCGGGAAGAGGAAGGGGGGGACGGGAG CGAGGAAGTTGTTTACGCACCTGCAAGCCTCGAGAATGTAGTCATAAAGG AGTCAGACACGCGTTTTATTCGTCAGTATGGCCGACTGTGGGGGGAAGAC CCTGTGGCAGAAGTGGCGGCCTTGATCCGCGTTCAGGAACATCAGCAGCA GCCAGGGCACCCGAACATCGTAGCCATGCAAGCAGCGTTTGAAGGCGAGG GCGTGAGTCAGGGGTTGCTCTTTATGGTCTTGCCCTATCTCTCGGGCAGC GAGCTGTTCTACCAGGTGACCGAGGCCAAGGGGCAGCAGGGACTGGGGGA AGAGGCGACACGGCCCATTCTGCGACAGGTGCTGGCAGGGTTGCTGCACT TGAAGCAGGCTCACGGTATCCGGCACGGAGACGTCTCGCCCGAGAATGTG ATGGTGGCACCCGACGGAAATGTCACACTGATTGACCTAGGTATGGCCGA ATGCCTTCCTTCCCCCCCGTCCTCCCATCCTTCCTCCTCGTCCTCGTCCT CGTCCCCTTCCTCTGTCCTTCTGGAAGCCCGGCCGCGGCGGGGGAAGAAG CAGTACATGGCGCCAGAGATCTACGAGGAGAGGGAATACGATCCCTTCGC GGCTGACGTGTGGGCATTGGGCGCCTTGCTTTACGTGTGCTGGACCGGAT GCACCATATTCAAATCGGCCTCCGACCCGCACTTCAGGAGCTTGAAGGAG GGGGGAAAGGAGGGCGGGTTGAGGCGGCTCTTGGCGGAGCGGGAGCGGCA GGGGAGCACGAGGGTGTTGTCGACGGAGGCGAAGGAGCTGTTGGGCGGAA TGATGGCCTGGGACCGGGAGAAGAGGATGACTTTGGAAGAGGTGGCCACG CACCCGTGGCTGGCGGAAGAAAAGGTGGTGGTGCAGAGGGAGGAGAAGGA GGAGACAGGGGAATGCCCGGGGAAGAAGGAGACGCAGCATTTGACGTCTG ATTGGTCGTTAGCGTCCATACTACCTGCGTTTGAAAGACAGGAGTTGAAC ACGGAGGTGAGGGAGAGTAGTCAAGAGGAGGGGCGAGAAAGGGAGGACAG GAGGGAGGACCGCCTGCATGCCTCGCTCTGGGCCTCCACATTTGCCTCGT TCAACGAAGATGACGTGACCGACGCGGTAGAGAACGAGAAGGAGGAGAAG GAGGAGAAAATTAACTATCCCTGCGCTCCCTCCGCGACCTGCGACTCGAC CACCCCTTCCAAGCAGCGCAGCAACAACTGCGACCCCGGGGATCCGGACA ACAGCCTGGCCTCTCTCCGGTCCTTGCACCATCTGGAGAGCTTTCAAAAC AACTACAGCAGCAGCAGCAGCAGCAGCAGCAATAACGACAACAACATAAT CGAAATCAACAATAACGACTATGACGACGACTTTGACAGTATTAATAATG ACGAAGACCAGGGATGCCGCCTCCCCTCCTCTCGAGCGATGTCTTCATCT TCTCTCTGCAATCATTCGATGCCTTCATGCCGCTTCGTAGCGAATGAGGA TGAAAGGGAGGGCGAGGAGAAAAAGGGCAAGGAATTGTTTGAGCAGGAGG AGGAGGAGGATAAGCTGACAGTATCGGTATCTTTCTCTTCCTCCATCACG TCCTTTTGTTCCGTCGCTCCGCAACTGTTTGAAGAGGCGCAAAAAATGCT GCAGACAGGCCTCTGAGGGGAAGATACAAATATGTTTATGTGTGCACGTG TATGCTTAAAGAAATTTTAAACTCATTTGTCATTACTGAGTAGTTTCAGG TTGTAACCAGGTCCGGATAGGAATCGAAGTAGAGAATGGGCGTGGATCAA TGCATGTCTGGTCGTCATATAAAGAGTGATGGATATATTGACCGGTAATA GCAATGTGGGAGTTCCCTAATACTTGTACAGGAAAAGCGGTTGAAGAAGT TTCGATGCCCAAATGATAAACGATATTCTTGTCTACCTCCCGTGTTGTCT CTGTGTTGGAGAAAAGGGCGAAGGCTTAATTTCGTGCGCGATGTGTGAAT GTCTGCGCGTGTAACCGCATCGTTTAAATGATAAAGAGGCAGAGCGATAA AGGTGTGATAAAAGGAAAAAGCTTCCATCGTGAGGATAGGAGGGGGAGGG GAACGGGGGTGAGATTGCCGAGACAGTCTCGCCCAGCTCCTTGCTTTTGA ATGGAAGAGTATTCGAGGGGACATCGAATTCGACAACAAAAATAAATCGT GAATAACCCCGCATG
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Coding sequence (CDS) from alignment at scaffold_5:1265139..1268453-

>mRNA_2812 ID=mRNA_2812|Name=jgi.p|Nanoce1779_2|552672|organism=Nannochloropsis oceanica|type=CDS|length=2283bp|location=Sequence derived from alignment at scaffold_5:1265139..1268453- (Nannochloropsis oceanica)
ATGACGGTCTCAACCTGCCGGCCCGCTTCCTCCTCCCTCTCTTCATCAGT
CTGCCCCTACTACTACCATGCCGACGACGAAACACCTCCGGCAAGCGCTC
AAGTCGGGCCCCCGAAGCAACTCCATAGCCCCCAACAGCACCTTAAAAAG
ACGATAGCAAACTATCCTTGCCCCACGGGTGGATATTTACCCCTGCTGAG
TATCCCCCCGAAGAGATTTCTCCTTCCTTATCCTCCCTCCTCGGCTTCGA
CGGCTGTAGCTGCTGCGACTGCAGAGCGAAGCTCAAATTCCCCCCCCGCC
ACACCTACCCATTGTTCGAGAATGGTCTTGGCCCCTGCTCCTCTGGACCT
GCCCGCCCACATGCCCACGGCCAGCATCAGCGTCCTTTCTGTACGTCTTT
CCCCTAGCCAGGCACCTAGCCGTCGCTCGTGCCTGCTGTCCGCCGCACCC
CGACGACAACAACAAGACAACAACGACAGCAGCTGTAGTAGCAGTAGCAA
CAGTAGCGGCAGCAGTAGCAGGGCCTATCTACTCCTGAATCAGCTGACAA
AGGCCAAAGACCGCGTCCGACTTTGGCTTGCATTAGTCCTGCGGGAAGAG
GAAGGGGGGGACGGGAGCGAGGAAGTTGTTTACGCACCTGCAAGCCTCGA
GAATGTAGTCATAAAGGAGTCAGACACGCGTTTTATTCGTCAGTATGGCC
GACTGTGGGGGGAAGACCCTGTGGCAGAAGTGGCGGCCTTGATCCGCGTT
CAGGAACATCAGCAGCAGCCAGGGCACCCGAACATCGTAGCCATGCAAGC
AGCGTTTGAAGGCGAGGGCGTGAGTCAGGGGTTGCTCTTTATGGTCTTGC
CCTATCTCTCGGGCAGCGAGCTGTTCTACCAGGTGACCGAGGCCAAGGGG
CAGCAGGGACTGGGGGAAGAGGCGACACGGCCCATTCTGCGACAGGTGCT
GGCAGGGTTGCTGCACTTGAAGCAGGCTCACGGTATCCGGCACGGAGACG
TCTCGCCCGAGAATGTGATGGTGGCACCCGACGGAAATGTCACACTGATT
GACCTAGGTATGGCCGAATGCCTTCCTTCCCCCCCGTCCTCCCATCCTTC
CTCCTCGTCCTCGTCCTCGTCCCCTTCCTCTGTCCTTCTGGAAGCCCGGC
CGCGGCGGGGGAAGAAGCAGTACATGGCGCCAGAGATCTACGAGGAGAGG
GAATACGATCCCTTCGCGGCTGACGTGTGGGCATTGGGCGCCTTGCTTTA
CGTGTGCTGGACCGGATGCACCATATTCAAATCGGCCTCCGACCCGCACT
TCAGGAGCTTGAAGGAGGGGGGAAAGGAGGGCGGGTTGAGGCGGCTCTTG
GCGGAGCGGGAGCGGCAGGGGAGCACGAGGGTGTTGTCGACGGAGGCGAA
GGAGCTGTTGGGCGGAATGATGGCCTGGGACCGGGAGAAGAGGATGACTT
TGGAAGAGGTGGCCACGCACCCGTGGCTGGCGGAAGAAAAGGTGGTGGTG
CAGAGGGAGGAGAAGGAGGAGACAGGGGAATGCCCGGGGAAGAAGGAGAC
GCAGCATTTGACGTCTGATTGGTCGTTAGCGTCCATACTACCTGCGTTTG
AAAGACAGGAGTTGAACACGGAGGTGAGGGAGAGTAGTCAAGAGGAGGGG
CGAGAAAGGGAGGACAGGAGGGAGGACCGCCTGCATGCCTCGCTCTGGGC
CTCCACATTTGCCTCGTTCAACGAAGATGACGTGACCGACGCGGTAGAGA
ACGAGAAGGAGGAGAAGGAGGAGAAAATTAACTATCCCTGCGCTCCCTCC
GCGACCTGCGACTCGACCACCCCTTCCAAGCAGCGCAGCAACAACTGCGA
CCCCGGGGATCCGGACAACAGCCTGGCCTCTCTCCGGTCCTTGCACCATC
TGGAGAGCTTTCAAAACAACTACAGCAGCAGCAGCAGCAGCAGCAGCAAT
AACGACAACAACATAATCGAAATCAACAATAACGACTATGACGACGACTT
TGACAGTATTAATAATGACGAAGACCAGGGATGCCGCCTCCCCTCCTCTC
GAGCGATGTCTTCATCTTCTCTCTGCAATCATTCGATGCCTTCATGCCGC
TTCGTAGCGAATGAGGATGAAAGGGAGGGCGAGGAGAAAAAGGGCAAGGA
ATTGTTTGAGCAGGAGGAGGAGGAGGATAAGCTGACAGTATCGGTATCTT
TCTCTTCCTCCATCACGTCCTTTTGTTCCGTCGCTCCGCAACTGTTTGAA
GAGGCGCAAAAAATGCTGCAGACAGGCCTCTGA
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Synonyms
Publications