jgi.p|Nanoce1779_2|637653, mRNA_2810 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|637653
Unique Name	mRNA_2810
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1137
Alignment location	scaffold_5:1259917..1261580 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	637739
Track	FilteredModels2
ProteinId	637653

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_5	supercontig	scaffold_5:1259917..1261580 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|637653	gene_2810	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|637653	mRNA_2810-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2810	CDS_2810	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_5:1259917..1261580+
coding sequence from alignment at scaffold_5:1259917..1261580+

mRNA sequence

>mRNA_2810 ID=mRNA_2810|Name=jgi.p|Nanoce1779_2|637653|organism=Nannochloropsis oceanica|type=mRNA|length=1137bp
ATGCAAGGACAAGCCTGCCTCGTCGCAGTAGCTTTCTTCGCCGCAGGCGC
GGCTGCGTTCCATCTCCAGCCCAGAGTGTCTGCCGTGTCCACCAGCAGCC
AGCTGAGGTCTCAGGCCATCAGCTATGGCATGCACCCGTCCGCCTTCCTC
TTCCCTGCTTCCTCAAGAAGAGAGTCATTCCAGGCCACCCGCACCCGCCT
CTCCTTCTCCCGCCGGCAAGACCCAGACGACGATGCCCCCATTCCTCCAC
CAGCAACGCCAGCAGCACCAGCAGCACAACCGCAGTCGTCCTTCCTCGAC
GACCAGAAAGAGGCTGAAGAGGAGGACTATTCAGCCATGACCAGGCTGAG
GGAAGAAGCCGAGTCGCCCTTCCGCTCCCTGCGCTTCCTTGTCTACGGCG
GCGTCGGGGCCTCGGGGGCTGTGGGTGCGCTCACCTCCATCACAGGCGCC
CTGGCTGCCTACACCGGTGTTCGCGGCGCCGTCCCCCTCAGTCAGTCTGG
AAAGGACATTGCTATTGACCTGGGGGCGATCGCGCTGGCAGCTGTGGCCT
GGAAGCTCGACTCGCAAACGAAAGCACGGAAGCTGGGAAGGCTGTCCAGG
GGCGCCAAAATCGCGGCTCTCAAGGTCCAGCTCCAGGAAGGGGGGGAAGG
GGGCAGAGCGGGGGAGCGGCCAGTGCTGAGCTTGGCGGATTTTAGGAGGG
ATCGGGGAAGGGCACGGAGGGTGGTGATCGTGGCAGGGGGAGAGGAGGTG
GTCCAGACCGCGTTGGCTGCAGCCGGCGCGGCGGAGCTAAAGCAGCGGTT
GGTTGATAACGCGTTCTTAGTCGTGCCGGTTGTGCTACCTGCAGGTCCCA
AGGAGCCTTCCTCCATCCTGGGGCTTGCCCAAGAACGACTCCAAGGTGCC
GTGGACGAGCCCCATGTCGGGTGCCCGCTGCTGTTGCGGGAGTGGCAGGA
ATACCTGGCCATCGAGGCGGCAGAGGCACGGAAGCAGGGCATTGACCCGG
TGAAGCAGGGCATCTCTGTGGTCCTTAAGCTGAATGGGAGGGTGGGCCAG
CGGGCGTTCGGCCAGCCGGCCTGGGAAAGGCTAGTGGGGGACGTGGAGCG
GCGGAGGAGGAGGGGCTTGGATGTGACCAACATTTAA

protein sequence of jgi.p|Nanoce1779_2|637653

>mRNA_2810-protein ID=mRNA_2810-protein|Name=jgi.p|Nanoce1779_2|637653|organism=Nannochloropsis oceanica|type=polypeptide|length=379bp
MQGQACLVAVAFFAAGAAAFHLQPRVSAVSTSSQLRSQAISYGMHPSAFL
FPASSRRESFQATRTRLSFSRRQDPDDDAPIPPPATPAAPAAQPQSSFLD
DQKEAEEEDYSAMTRLREEAESPFRSLRFLVYGGVGASGAVGALTSITGA
LAAYTGVRGAVPLSQSGKDIAIDLGAIALAAVAWKLDSQTKARKLGRLSR
GAKIAALKVQLQEGGEGGRAGERPVLSLADFRRDRGRARRVVIVAGGEEV
VQTALAAAGAAELKQRLVDNAFLVVPVVLPAGPKEPSSILGLAQERLQGA
VDEPHVGCPLLLREWQEYLAIEAAEARKQGIDPVKQGISVVLKLNGRVGQ
RAFGQPAWERLVGDVERRRRRGLDVTNI*

mRNA from alignment at scaffold_5:1259917..1261580+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2810 ID=mRNA_2810|Name=jgi.p|Nanoce1779_2|637653|organism=Nannochloropsis oceanica|type=mRNA|length=1664bp|location=Sequence derived from alignment at scaffold_5:1259917..1261580+ (Nannochloropsis oceanica)
ATGCAAGGACAAGCCTGCCTCGTCGCAGTAGCTTTCTTCGCCGCAGGCGC
GGCTGCGTTCCATCTCCAGCCCAGAGTGTCTGCCGTGTCCACCAGCAGCC
AGCTGAGGTCTCAGGCCATCAGCTATGGCATGCACCCGTCCGCCTTCCTC
TTCCCTGCTTCCTCAAGGTGCGTGTCTGTCTGGCAAGTGAATCGATCTTG
GATGACGGGCTTGAACGAAGCAAAGTGAGGTGGTGTCCGTCTGTTCGTCA
CACGTACCCCCTCATACCGTGCAATGCCAAGCAAGCAGTGTTGAATAAGA
CCGGCAAGCTGCAAATACGTGTGCCTGACAAGCTGTAAGCGGGTCGTCTT
TCTTTTAATGGCGCATTATTTCCGGTGTATGGCATGTCTTGAACCCTCCT
CCCTTGCTTGCCTTCCCCTTTTACGCACTACTCCATGCTGCACGACCAAG
CAACTGTGTGAATCACAGGATGAGTCTGTCCGCTTGTTGGGTCTTCCGCA
AATCATGCTTCACCACCCTACTCTCCATCCTCGCTTCCTTCACTCTCTCC
CACTTAACCTCCTCTCCTCCCACACTGCATCTCTTCAGCTCTGGCTCGTA
TCATCGACGATTGGTTATCCTTCTTTCCGCCCCGGCATCCTCCTTGGTAT
TTCCCTCGCAGCTCATTCCATCTAACCCTTTCACTAACCCACAGAAGAGA
GTCATTCCAGGCCACCCGCACCCGCCTCTCCTTCTCCCGCCGGCAAGACC
CAGACGACGATGCCCCCATTCCTCCACCAGCAACGCCAGCAGCACCAGCA
GCACAACCGCAGTCGTCCTTCCTCGACGACCAGAAAGAGGCTGAAGAGGA
GGACTATTCAGCCATGACCAGGCTGAGGGAAGAAGCCGAGTCGCCCTTCC
GCTCCCTGCGCTTCCTTGTCTACGGCGGCGTCGGGGCCTCGGGGGCTGTG
GGTGCGCTCACCTCCATCACAGGCGCCCTGGCTGCCTACACCGGTGTTCG
CGGCGCCGTCCCCCTCAGTCAGTCTGGAAAGGACATTGCTATTGACCTGG
GGGCGATCGCGCTGGCAGCTGTGGCCTGGAAGCTCGACTCGCAAACGAAA
GCACGGAAGCTGGGAAGGCTGTCCAGGGGCGCCAAAATCGCGGCTCTCAA
GGTCCAGCTCCAGGAAGGGGGGGAAGGGGGCAGAGCGGGGGAGCGGCCAG
TGCTGAGCTTGGCGGATTTTAGGAGGGATCGGGGAAGGGCACGGAGGGTG
GTGATCGTGGCAGGGGGAGAGGAGGTGGTCCAGACCGCGTTGGCTGCAGC
CGGCGCGGCGGAGCTAAAGCAGCGGTTGGTTGATAACGCGTTCTTAGTCG
TGCCGGTTGTGCTACCTGCAGGTCCCAAGGAGCCTTCCTCCATCCTGGGG
CTTGCCCAAGAACGACTCCAAGGTGCCGTGGACGAGCCCCATGTCGGGTG
CCCGCTGCTGTTGCGGGAGTGGCAGGAATACCTGGCCATCGAGGCGGCAG
AGGCACGGAAGCAGGGCATTGACCCGGTGAAGCAGGGCATCTCTGTGGTC
CTTAAGCTGAATGGGAGGGTGGGCCAGCGGGCGTTCGGCCAGCCGGCCTG
GGAAAGGCTAGTGGGGGACGTGGAGCGGCGGAGGAGGAGGGGCTTGGATG
TGACCAACATTTAA

Coding sequence (CDS) from alignment at scaffold_5:1259917..1261580+

>mRNA_2810 ID=mRNA_2810|Name=jgi.p|Nanoce1779_2|637653|organism=Nannochloropsis oceanica|type=CDS|length=2274bp|location=Sequence derived from alignment at scaffold_5:1259917..1261580+ (Nannochloropsis oceanica)
ATGCAAGGACAAGCCTGCCTCGTCGCAGTAGCTTTCTTCGCCGCAGGCGC
GGCTGCGTTCCATCTCCAGCCCAGAGTGTCTGCCGTGTCCACCAGCAGCC
AGCTGAGGTCTCAGGCCATCAGCTATGGCATGCACCCGTCCGCCTTCCTC
TTCCCTGCTTCCTCAAGAAGAGAGTCATTCCAGGCCACCCGCACCCGCCT
CTCCTTCTCCCGCCGGCAAGACCCAGACGACGATGCCCCCATTCCTCCAC
CAGCAACGCCAGCAGCACCAGCAGCACAACCGCAGTCGTCCTTCCTCGAC
GACCAGAAAGAGGCTGAAGAGGAGGACTATTCAGCCATGACCAGGCTGAG
GGAAGAAGCCGAGTCGCCCTTCCGCTCCCTGCGCTTCCTTGTCTACGGCG
GCGTCGGGGCCTCGGGGGCTGTGGGTGCGCTCACCTCCATCACAGGCGCC
CTGGCTGCCTACACCGGTGTTCGCGGCGCCGTCCCCCTCAGTCAGTCTGG
AAAGGACATTGCTATTGACCTGGGGGCGATCGCGCTGGCAGCTGTGGCCT
GGAAGCTCGACTCGCAAACGAAAGCACGGAAGCTGGGAAGGCTGTCCAGG
GGCGCCAAAATCGCGGCTCTCAAGGTCCAGCTCCAGGAAGGGGGGGAAGG
GGGCAGAGCGGGGGAGCGGCCAGTGCTGAGCTTGGCGGATTTTAGGAGGG
ATCGGGGAAGGGCACGGAGGGTGGTGATCGTGGCAGGGGGAGAGGAGGTG
GTCCAGACCGCGTTGGCTGCAGCCGGCGCGGCGGAGCTAAAGCAGCGGTT
GGTTGATAACGCGTTCTTAGTCGTGCCGGTTGTGCTACCTGCAGGTCCCA
AGGAGCCTTCCTCCATCCTGGGGCTTGCCCAAGAACGACTCCAAGGTGCC
GTGGACGAGCCCCATGTCGGGTGCCCGCTGCTGTTGCGGGAGTGGCAGGA
ATACCTGGCCATCGAGGCGGCAGAGGCACGGAAGCAGGGCATTGACCCGG
TGAAGCAGGGCATCTCTGTGGTCCTTAAGCTGAATGGGAGGGTGGGCCAG
CGGGCGTTCGGCCAGCCGGCCTGGGAAAGGCTAGTGGGGGACGTGGAGCG
GCGGAGGAGGAGGGGCTTGGATGTGACCAACATTTAAATGCAAGGACAAG
CCTGCCTCGTCGCAGTAGCTTTCTTCGCCGCAGGCGCGGCTGCGTTCCAT
CTCCAGCCCAGAGTGTCTGCCGTGTCCACCAGCAGCCAGCTGAGGTCTCA
GGCCATCAGCTATGGCATGCACCCGTCCGCCTTCCTCTTCCCTGCTTCCT
CAAGAAGAGAGTCATTCCAGGCCACCCGCACCCGCCTCTCCTTCTCCCGC
CGGCAAGACCCAGACGACGATGCCCCCATTCCTCCACCAGCAACGCCAGC
AGCACCAGCAGCACAACCGCAGTCGTCCTTCCTCGACGACCAGAAAGAGG
CTGAAGAGGAGGACTATTCAGCCATGACCAGGCTGAGGGAAGAAGCCGAG
TCGCCCTTCCGCTCCCTGCGCTTCCTTGTCTACGGCGGCGTCGGGGCCTC
GGGGGCTGTGGGTGCGCTCACCTCCATCACAGGCGCCCTGGCTGCCTACA
CCGGTGTTCGCGGCGCCGTCCCCCTCAGTCAGTCTGGAAAGGACATTGCT
ATTGACCTGGGGGCGATCGCGCTGGCAGCTGTGGCCTGGAAGCTCGACTC
GCAAACGAAAGCACGGAAGCTGGGAAGGCTGTCCAGGGGCGCCAAAATCG
CGGCTCTCAAGGTCCAGCTCCAGGAAGGGGGGGAAGGGGGCAGAGCGGGG
GAGCGGCCAGTGCTGAGCTTGGCGGATTTTAGGAGGGATCGGGGAAGGGC
ACGGAGGGTGGTGATCGTGGCAGGGGGAGAGGAGGTGGTCCAGACCGCGT
TGGCTGCAGCCGGCGCGGCGGAGCTAAAGCAGCGGTTGGTTGATAACGCG
TTCTTAGTCGTGCCGGTTGTGCTACCTGCAGGTCCCAAGGAGCCTTCCTC
CATCCTGGGGCTTGCCCAAGAACGACTCCAAGGTGCCGTGGACGAGCCCC
ATGTCGGGTGCCCGCTGCTGTTGCGGGAGTGGCAGGAATACCTGGCCATC
GAGGCGGCAGAGGCACGGAAGCAGGGCATTGACCCGGTGAAGCAGGGCAT
CTCTGTGGTCCTTAAGCTGAATGGGAGGGTGGGCCAGCGGGCGTTCGGCC
AGCCGGCCTGGGAAAGGCTAGTGGGGGACGTGGAGCGGCGGAGGAGGAGG
GGCTTGGATGTGACCAACATTTAA

Synonyms

Publications