Properties
| Property Name | Value |
|---|
| TranscriptId | 581774 |
| Track | FilteredModels2 |
| ProteinId | 581688 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_5 | supercontig | scaffold_5:1254460..1256283 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_2808 ID=mRNA_2808|Name=jgi.p|Nanoce1779_2|581688|organism=Nannochloropsis oceanica|type=mRNA|length=1824bp
GGTGTCCTCAACCCAATTGTGCGGGAGTGGCGCGGCTGACCCGTGCTCCG
CGGCGAGGCCATGATGGACACTATGTAGCGGCATCGTGCCCCGTCTGTAC
ACATATATTCTGCGGTAACTGCGGCGAAGGCCCTCATGGGGAGGATGGTT
GTGACAAGGCTGGCGATCAGGCTTATGCCATGTGGAAGAAGCGAAAAGGT
GAGACTGTCAAATCCTGTCCTGGATGCGGACACCATGTGGAGAAAACGGG
TGGTTGCAATGCCCTCGTCTGCAGCCGCTGTCGAACGAAATTTTGTTGGT
TATGTGGTTTAAAGGCAGGGAAGTGCAAGTGTTTAAATATGCGCTTTGCG
GTGTGGCATGATGATCTCCAGCCCGTGCCTCCATTTCGCACATTGGTGAA
TCTTCTGATTATCATAATTGCTGGGGCATGGGCCTTGGCTTTTGTATTAG
TGTGGATTTTTGTCTTGTTGCTCTATGGACCAGATGAAATGATGCGCCGC
ATTTTGTTTCACCGCCACATACTGTACCAGACGTGTATAATCATCTCACA
GGATTTGAGGGACCTAATGGAGTGGATTTTGATGCAATTTAGCAGGTAGT
AAGAACGGGGATGAAAGATGAAAGGAATAGGGACAACTTGTGTGAGTCTG
GTACCATGTGTCTTCCCCCTCGTAAGGGCAAAGTGATCTATCAGAGGACG
GCTGAACAGCATTTCTATGGCGATCGTGGAAGTGGAAGATAGCATTTTGG
GCCAACCTGCATCACAACACTGTGATCAATACCAGGGGCAGACGAGCCAT
GCGGTCTTCCTGCGCTGCCCCAAGAGTATTGATTATCTTTTGTCGCTAGT
GTTAGTGCTTGGCACCTACGTGATCATGGCTATCAGTGAATACTGTATGA
GCTACGAAACGTCCTAATGTTAATTTTCGAGGCAGTCATTGAGTCCCTGA
CGTCCTGGTCTCTCCAATAGGAGAAGTGGTACATGGTCCGACAACCCTTC
CTGCGCTTTTGCTCGCGGCTGAAAAGAAGCTGGTGAAAGGTGGATTCTGA
GAGAATGTAGGACTGCTCTCAGCAAGAAGAAATTTGGAAGTGTGAGTTAT
CTGCCCGAAACGAAAGAGCGTTTGGTTCTCTTCATGTTCTTCCACTCTCT
TTAAATAGAATTCTCTTTGAATATAATCTCACATGGAAGGATTAAAAAGT
GGTTATTACTTTCTTAGATTCATTTGTCTGGCTTCATAAATATCAAGACC
TCTTTCGAACTCTTCTCTCCTTGAGCTCGACACTCGCTTCCTTTCCGATA
CCTCCCCAGAGAATCGGGTATTTGTTGTTCTTCATGGTCGCTCTTCTCTT
CACTTTATTTTGGTTTCTTAATTCCAGCCCACGACTCCCTCCTCGGACTG
CCCGTCCGCCTCCATCCCTTTCCACTAACTCCCCCCCTCTTCCTTCTCCA
TCTGTTTCTAAATTTCGTGCCTTTTCTGCTCCCTCACAATTCCAACCAAC
GCTTTGCGGGTAGTGAGTACGTGTACACAACTCTCTTTCCTCTGGTCTCT
CAATTCACACTAGTGTCCCTCTCCAAAATTACAACCTCCCATAATCCGTC
GCCAACCATAAAGAGGCCCTCTCTCCCTCACTCCCTCTTCATTCCATTCC
TCTGTCAAGCTATTGCTACCTTAAAAACAGTCGGCCAAACATATTTGTGG
ATGCAGTCTCATTCCTCCCACTCATCGGCGACCCTGTCACGGCAATCTTA
GAGACAACATTCCTTCCCCCCCCTCCTTCCTCCCTCATTCCCTCTCCGCC
TCCAGTTGCCCCCCCGGAGCCCAC back to topprotein sequence of jgi.p|Nanoce1779_2|581688 >mRNA_2808-protein ID=mRNA_2808-protein|Name=jgi.p|Nanoce1779_2|581688|organism=Nannochloropsis oceanica|type=polypeptide|length=140bp
MWKKRKGETVKSCPGCGHHVEKTGGCNALVCSRCRTKFCWLCGLKAGKCK
CLNMRFAVWHDDLQPVPPFRTLVNLLIIIIAGAWALAFVLVWIFVLLLYG
PDEMMRRILFHRHILYQTCIIISQDLRDLMEWILMQFSR* back to topmRNA from alignment at scaffold_5:1254460..1256283+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_2808 ID=mRNA_2808|Name=jgi.p|Nanoce1779_2|581688|organism=Nannochloropsis oceanica|type=mRNA|length=1824bp|location=Sequence derived from alignment at scaffold_5:1254460..1256283+ (Nannochloropsis oceanica)
GGTGTCCTCAACCCAATTGTGCGGGAGTGGCGCGGCTGACCCGTGCTCCG
CGGCGAGGCCATGATGGACACTATGTAGCGGCATCGTGCCCCGTCTGTAC
ACATATATTCTGCGGTAACTGCGGCGAAGGCCCTCATGGGGAGGATGGTT
GTGACAAGGCTGGCGATCAGGCTTATGCCATGTGGAAGAAGCGAAAAGGT
GAGACTGTCAAATCCTGTCCTGGATGCGGACACCATGTGGAGAAAACGGG
TGGTTGCAATGCCCTCGTCTGCAGCCGCTGTCGAACGAAATTTTGTTGGT
TATGTGGTTTAAAGGCAGGGAAGTGCAAGTGTTTAAATATGCGCTTTGCG
GTGTGGCATGATGATCTCCAGCCCGTGCCTCCATTTCGCACATTGGTGAA
TCTTCTGATTATCATAATTGCTGGGGCATGGGCCTTGGCTTTTGTATTAG
TGTGGATTTTTGTCTTGTTGCTCTATGGACCAGATGAAATGATGCGCCGC
ATTTTGTTTCACCGCCACATACTGTACCAGACGTGTATAATCATCTCACA
GGATTTGAGGGACCTAATGGAGTGGATTTTGATGCAATTTAGCAGGTAGT
AAGAACGGGGATGAAAGATGAAAGGAATAGGGACAACTTGTGTGAGTCTG
GTACCATGTGTCTTCCCCCTCGTAAGGGCAAAGTGATCTATCAGAGGACG
GCTGAACAGCATTTCTATGGCGATCGTGGAAGTGGAAGATAGCATTTTGG
GCCAACCTGCATCACAACACTGTGATCAATACCAGGGGCAGACGAGCCAT
GCGGTCTTCCTGCGCTGCCCCAAGAGTATTGATTATCTTTTGTCGCTAGT
GTTAGTGCTTGGCACCTACGTGATCATGGCTATCAGTGAATACTGTATGA
GCTACGAAACGTCCTAATGTTAATTTTCGAGGCAGTCATTGAGTCCCTGA
CGTCCTGGTCTCTCCAATAGGAGAAGTGGTACATGGTCCGACAACCCTTC
CTGCGCTTTTGCTCGCGGCTGAAAAGAAGCTGGTGAAAGGTGGATTCTGA
GAGAATGTAGGACTGCTCTCAGCAAGAAGAAATTTGGAAGTGTGAGTTAT
CTGCCCGAAACGAAAGAGCGTTTGGTTCTCTTCATGTTCTTCCACTCTCT
TTAAATAGAATTCTCTTTGAATATAATCTCACATGGAAGGATTAAAAAGT
GGTTATTACTTTCTTAGATTCATTTGTCTGGCTTCATAAATATCAAGACC
TCTTTCGAACTCTTCTCTCCTTGAGCTCGACACTCGCTTCCTTTCCGATA
CCTCCCCAGAGAATCGGGTATTTGTTGTTCTTCATGGTCGCTCTTCTCTT
CACTTTATTTTGGTTTCTTAATTCCAGCCCACGACTCCCTCCTCGGACTG
CCCGTCCGCCTCCATCCCTTTCCACTAACTCCCCCCCTCTTCCTTCTCCA
TCTGTTTCTAAATTTCGTGCCTTTTCTGCTCCCTCACAATTCCAACCAAC
GCTTTGCGGGTAGTGAGTACGTGTACACAACTCTCTTTCCTCTGGTCTCT
CAATTCACACTAGTGTCCCTCTCCAAAATTACAACCTCCCATAATCCGTC
GCCAACCATAAAGAGGCCCTCTCTCCCTCACTCCCTCTTCATTCCATTCC
TCTGTCAAGCTATTGCTACCTTAAAAACAGTCGGCCAAACATATTTGTGG
ATGCAGTCTCATTCCTCCCACTCATCGGCGACCCTGTCACGGCAATCTTA
GAGACAACATTCCTTCCCCCCCCTCCTTCCTCCCTCATTCCCTCTCCGCC
TCCAGTTGCCCCCCCGGAGCCCAC back to topCoding sequence (CDS) from alignment at scaffold_5:1254460..1256283+ >mRNA_2808 ID=mRNA_2808|Name=jgi.p|Nanoce1779_2|581688|organism=Nannochloropsis oceanica|type=CDS|length=420bp|location=Sequence derived from alignment at scaffold_5:1254460..1256283+ (Nannochloropsis oceanica)
ATGTGGAAGAAGCGAAAAGGTGAGACTGTCAAATCCTGTCCTGGATGCGG
ACACCATGTGGAGAAAACGGGTGGTTGCAATGCCCTCGTCTGCAGCCGCT
GTCGAACGAAATTTTGTTGGTTATGTGGTTTAAAGGCAGGGAAGTGCAAG
TGTTTAAATATGCGCTTTGCGGTGTGGCATGATGATCTCCAGCCCGTGCC
TCCATTTCGCACATTGGTGAATCTTCTGATTATCATAATTGCTGGGGCAT
GGGCCTTGGCTTTTGTATTAGTGTGGATTTTTGTCTTGTTGCTCTATGGA
CCAGATGAAATGATGCGCCGCATTTTGTTTCACCGCCACATACTGTACCA
GACGTGTATAATCATCTCACAGGATTTGAGGGACCTAATGGAGTGGATTT
TGATGCAATTTAGCAGGTAG back to top
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