jgi.p|Nanoce1779_2|581674, mRNA_2806 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|581674
Unique NamemRNA_2806
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length511
Alignment locationscaffold_5:1247119..1247935 +

Link to JBrowse

Properties
Property NameValue
TranscriptId581760
TrackFilteredModels2
ProteinId581674
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:1247119..1247935 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|581674gene_2806Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|581674mRNA_2806-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2806CDS_2806Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2806 ID=mRNA_2806|Name=jgi.p|Nanoce1779_2|581674|organism=Nannochloropsis oceanica|type=mRNA|length=511bp
CCTCCCTCCCTCCCTCGCTCCCTCCCTCCCTCCAGGTACACGGAGCACGA
GTTTGACCACGAGTTTATCGAGGAGCTCTCTCGGGCTATCTACATGTTCA
TCAAGCAGCAGCGCAAGCCCCCCTCCCTCGCAGCCATTAGTGACTACGTC
CGCACATCCGGGGTCTCGAAGGTGGAGCTCGCTGCAGAGGAAGTGCAGCT
GATCATTAACAGCCTGGCCTACGACATGAAAATAGAGCCCGTCCGCAGCG
GCGTTTTGGGTGCCCTCCACACCCCCGACGGCGGCCCCTGCTATAAGGTC
TCACGGCACGTGACGCCCTTGAATCACTTCACCGACTTTCCCTGTGGCCG
ATGCCCTGTCCAAGCGCAGTGTGAGGAGGGCGGAGAGATCTCGCCCGCGG
CTTGTCGGTATTTCAATCGCTGGCTTGAGCTCAAGGACGGAGGGGGAGGG
GGAGGAGGCACCGTGGGAGGAGGGATGATAGAATTTTGATACATTAGGAT
ATACATAAGAA
back to top

protein sequence of jgi.p|Nanoce1779_2|581674

>mRNA_2806-protein ID=mRNA_2806-protein|Name=jgi.p|Nanoce1779_2|581674|organism=Nannochloropsis oceanica|type=polypeptide|length=132bp
MFIKQQRKPPSLAAISDYVRTSGVSKVELAAEEVQLIINSLAYDMKIEPV
RSGVLGALHTPDGGPCYKVSRHVTPLNHFTDFPCGRCPVQAQCEEGGEIS
PAACRYFNRWLELKDGGGGGGGTVGGGMIEF*
back to top

mRNA from alignment at scaffold_5:1247119..1247935+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2806 ID=mRNA_2806|Name=jgi.p|Nanoce1779_2|581674|organism=Nannochloropsis oceanica|type=mRNA|length=817bp|location=Sequence derived from alignment at scaffold_5:1247119..1247935+ (Nannochloropsis oceanica)
CCTCCCTCCCTCCCTCGCTCCCTCCCTCCCTCCAGGTACACGGAGCACGA
GTTTGACCACGAGTTTATCGAGGAGCTCTCTCGGGCTATCTACATGTTCA
TCAAGCAGCAGCGCAAGCCCCCCTCCCTCGCAGCCATTAGTGACTACGTC
CGCACATCCGGGGTCTCGAAGGTAGGGAGGCAGGGAGGCAGGAAGGGAGG
GATGGAGGGAGGGAGGGCGGGCGGTCAGGAGGGAGGGTGTATGTGCGGAG
CATCGATGCTTTTTGTTCTTACCCTCCCTCCCTCCCTTCCTGCCCCGACC
TGACAGGTGGAGCTCGCTGCAGAGGAAGTGCAGCTGATCATTAACAGCCT
GGCCTACGACATGAAAATAGAGCCCGTCCGCAGCGGCGTTTTGGGTGCCC
TCCACGTACGTGTCTCTTCGCCGTCTTTTCCTCCCTTCCTCCCTCCCCCA
TTCGGCGTCGTCTTCGCCTTCTCCGTTTCCTCTCCAGTCCTCCTCCTTCT
CTCCCTCCCCCTCTCTCGGTGCCTACCATCCTCCCCACACATTCTTTCTT
TCCCCCTTCCCCCCCCTCCCTTACAGACCCCCGACGGCGGCCCCTGCTAT
AAGGTCTCACGGCACGTGACGCCCTTGAATCACTTCACCGACTTTCCCTG
TGGCCGATGCCCTGTCCAAGCGCAGTGTGAGGAGGGCGGAGAGATCTCGC
CCGCGGCTTGTCGGTATTTCAATCGCTGGCTTGAGCTCAAGGACGGAGGG
GGAGGGGGAGGAGGCACCGTGGGAGGAGGGATGATAGAATTTTGATACAT
TAGGATATACATAAGAA
back to top

Coding sequence (CDS) from alignment at scaffold_5:1247119..1247935+

>mRNA_2806 ID=mRNA_2806|Name=jgi.p|Nanoce1779_2|581674|organism=Nannochloropsis oceanica|type=CDS|length=1188bp|location=Sequence derived from alignment at scaffold_5:1247119..1247935+ (Nannochloropsis oceanica)
ATGTTCATCAAGCAGCAGCGCAAGCCCCCCTCCCTCGCAGCCATTAGTGA
CTACGTCCGCACATCCGGGGTCTCGAAGGTGGAGCTCGCTGCAGAGGAAG
TGCAGCTGATCATTAACAGCCTGGCCTACGACATGAAAATAGAGCCCGTC
CGCAGCGGCGTTTTGGGTGCCCTCCACACCCCCGACGGCGGCCCCTGCTA
TAAGGTCTCACGGCACGTGACGCCCTTGAATCACTTCACCGACTTTCCCT
GTGGCCGATGCCCTGTCCAAGCGCAGTGTGAGGAGGGCGGAGAGATCTCG
CCCGCGGCTTGTCGGTATTTCAATCGCTGGCTTGAGCTCAAGGACGGAGG
GGGAGGGGGAGGAGGCACCGTGGGAGGAGGGATGATAGAATTTTGAATGT
TCATCAAGCAGCAGCGCAAGCCCCCCTCCCTCGCAGCCATTAGTGACTAC
GTCCGCACATCCGGGGTCTCGAAGGTGGAGCTCGCTGCAGAGGAAGTGCA
GCTGATCATTAACAGCCTGGCCTACGACATGAAAATAGAGCCCGTCCGCA
GCGGCGTTTTGGGTGCCCTCCACACCCCCGACGGCGGCCCCTGCTATAAG
GTCTCACGGCACGTGACGCCCTTGAATCACTTCACCGACTTTCCCTGTGG
CCGATGCCCTGTCCAAGCGCAGTGTGAGGAGGGCGGAGAGATCTCGCCCG
CGGCTTGTCGGTATTTCAATCGCTGGCTTGAGCTCAAGGACGGAGGGGGA
GGGGGAGGAGGCACCGTGGGAGGAGGGATGATAGAATTTTGAATGTTCAT
CAAGCAGCAGCGCAAGCCCCCCTCCCTCGCAGCCATTAGTGACTACGTCC
GCACATCCGGGGTCTCGAAGGTGGAGCTCGCTGCAGAGGAAGTGCAGCTG
ATCATTAACAGCCTGGCCTACGACATGAAAATAGAGCCCGTCCGCAGCGG
CGTTTTGGGTGCCCTCCACACCCCCGACGGCGGCCCCTGCTATAAGGTCT
CACGGCACGTGACGCCCTTGAATCACTTCACCGACTTTCCCTGTGGCCGA
TGCCCTGTCCAAGCGCAGTGTGAGGAGGGCGGAGAGATCTCGCCCGCGGC
TTGTCGGTATTTCAATCGCTGGCTTGAGCTCAAGGACGGAGGGGGAGGGG
GAGGAGGCACCGTGGGAGGAGGGATGATAGAATTTTGA
back to top
Synonyms
Publications