jgi.p|Nanoce1779_2|628772, mRNA_2803 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|628772
Unique NamemRNA_2803
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length542
Alignment locationscaffold_5:1236063..1236884 -

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Properties
Property NameValue
TranscriptId628858
TrackFilteredModels2
ProteinId628772
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:1236063..1236884 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|628772gene_2803Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|628772mRNA_2803-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2803CDS_2803Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2803 ID=mRNA_2803|Name=jgi.p|Nanoce1779_2|628772|organism=Nannochloropsis oceanica|type=mRNA|length=542bp
ATGGACGGAAAGGAGGGGGAGAAGGGTGGGCAGGGGCGACCTCCGTCATC
GCTGATAGTGATGGATGTGGAGAAGAAGAAGGGGGTGTATGACTTCATGG
TCCGGGTAGGGTGGATCACGCCCCGAGCTGCCGCCTCCCGTTCCGACGTG
AAGGACATTTCTATCACTGTCAGTGGTGGCGAGGGAGGCGCTGTCTCTGA
ATCTTCCTCCCTCCCTCCCTCGTCCTCTCCTCCGTCCGCGAAGAAGGGCA
GGCCGCCTGGTTCGGGGAAGGAGGCAGGGGAGGAGGAAGGGGAGGAGAAG
GGATCGGGTGGAGACAGGATTGATGTCGACGAGGCACGACCAGAGAAGGA
GAAGGGGGGAGAGGGGGCAGGAGGAGGAGGTGGGAAGGGAGAAAAGGGCA
CGTGCCCTCCCTCCACGGCAAGCCAGAGGAAATCGTCACGGTCCTCCCCC
TCCCCCTCTCCTTCATCTCCAGCGCAGAGTGGCAAGAAGAAGGGGGTGTC
AGAAGAAGGCAAGGGCAAGGTAGAGGCTTCGGCGATGGAGAC
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protein sequence of jgi.p|Nanoce1779_2|628772

>mRNA_2803-protein ID=mRNA_2803-protein|Name=jgi.p|Nanoce1779_2|628772|organism=Nannochloropsis oceanica|type=polypeptide|length=180bp
MDGKEGEKGGQGRPPSSLIVMDVEKKKGVYDFMVRVGWITPRAAASRSDV
KDISITVSGGEGGAVSESSSLPPSSSPPSAKKGRPPGSGKEAGEEEGEEK
GSGGDRIDVDEARPEKEKGGEGAGGGGGKGEKGTCPPSTASQRKSSRSSP
SPSPSSPAQSGKKKGVSEEGKGKVEASAME
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mRNA from alignment at scaffold_5:1236063..1236884-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2803 ID=mRNA_2803|Name=jgi.p|Nanoce1779_2|628772|organism=Nannochloropsis oceanica|type=mRNA|length=822bp|location=Sequence derived from alignment at scaffold_5:1236063..1236884- (Nannochloropsis oceanica)
ATGGACGGAAAGGAGGGGGAGAAGGGTGGGCAGGGGCGACCTCCGTCATC
GCTGATAGTGATGGATGTGGAGAAGAAGAAGGGGGTGTATGACTTCATGG
TCCGGGTAGGGTGGATCACGCCCCGAGGTGCGTGCAGGGAGCTGCCAGTA
GGGGTGGGGGGATAGGCGCAGGGATGGTTACGTATGGGCGTATTTCTGCT
TCTCCCCCTTGTCTTCCTTAACTCCCTCTCCTCTTCCATCCTCCGCGCTT
GGGTGATGGACGGGAACTGCTGGAGGGGTGAAGTGGAAGGGCTGCCTCGT
CCTCTTTCTGACTTTCTCTGACAGTCTCTCTTTTAGCTCCTCTCGTCTTC
ATCCTTCCCGCCCTCACTTCCTCCCGCCCTCCTTATCCCCCACCCTCTCT
CTTACAGCTGCCGCCTCCCGTTCCGACGTGAAGGACATTTCTATCACTGT
CAGTGGTGGCGAGGGAGGCGCTGTCTCTGAATCTTCCTCCCTCCCTCCCT
CGTCCTCTCCTCCGTCCGCGAAGAAGGGCAGGCCGCCTGGTTCGGGGAAG
GAGGCAGGGGAGGAGGAAGGGGAGGAGAAGGGATCGGGTGGAGACAGGAT
TGATGTCGACGAGGCACGACCAGAGAAGGAGAAGGGGGGAGAGGGGGCAG
GAGGAGGAGGTGGGAAGGGAGAAAAGGGCACGTGCCCTCCCTCCACGGCA
AGCCAGAGGAAATCGTCACGGTCCTCCCCCTCCCCCTCTCCTTCATCTCC
AGCGCAGAGTGGCAAGAAGAAGGGGGTGTCAGAAGAAGGCAAGGGCAAGG
TAGAGGCTTCGGCGATGGAGAC
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Coding sequence (CDS) from alignment at scaffold_5:1236063..1236884-

>mRNA_2803 ID=mRNA_2803|Name=jgi.p|Nanoce1779_2|628772|organism=Nannochloropsis oceanica|type=CDS|length=1080bp|location=Sequence derived from alignment at scaffold_5:1236063..1236884- (Nannochloropsis oceanica)
CTGCCGCCTCCCGTTCCGACGTGAAGGACATTTCTATCACTGTCAGTGGT
GGCGAGGGAGGCGCTGTCTCTGAATCTTCCTCCCTCCCTCCCTCGTCCTC
TCCTCCGTCCGCGAAGAAGGGCAGGCCGCCTGGTTCGGGGAAGGAGGCAG
GGGAGGAGGAAGGGGAGGAGAAGGGATCGGGTGGAGACAGGATTGATGTC
GACGAGGCACGACCAGAGAAGGAGAAGGGGGGAGAGGGGGCAGGAGGAGG
AGGTGGGAAGGGAGAAAAGGGCACGTGCCCTCCCTCCACGGCAAGCCAGA
GGAAATCGTCACGGTCCTCCCCCTCCCCCTCTCCTTCATCTCCAGCGCAG
AGTGGCAAGAAGAAGGGGGTGTCAGAAGAAGGCAAGGGCAAGGTAGAGGC
TTCGGCGATGGAGATGGACGGAAAGGAGGGGGAGAAGGGTGGGCAGGGGC
GACCTCCGTCATCGCTGATAGTGATGGATGTGGAGAAGAAGAAGGGGGTG
TATGACTTCATGGTCCGGGTAGGGTGGATCACGCCCCGAGCTGCCGCCTC
CCGTTCCGACGTGAAGGACATTTCTATCACTGTCAGTGGTGGCGAGGGAG
GCGCTGTCTCTGAATCTTCCTCCCTCCCTCCCTCGTCCTCTCCTCCGTCC
GCGAAGAAGGGCAGGCCGCCTGGTTCGGGGAAGGAGGCAGGGGAGGAGGA
AGGGGAGGAGAAGGGATCGGGTGGAGACAGGATTGATGTCGACGAGGCAC
GACCAGAGAAGGAGAAGGGGGGAGAGGGGGCAGGAGGAGGAGGTGGGAAG
GGAGAAAAGGGCACGTGCCCTCCCTCCACGGCAAGCCAGAGGAAATCGTC
ACGGTCCTCCCCCTCCCCCTCTCCTTCATCTCCAGCGCAGAGTGGCAAGA
AGAAGGGGGTGTCAGAAGAAGGCAAGGGCAAGGTAGAGGCTTCGGCGATG
GAGATGGACGGAAAGGAGGGGGAGAAGGGTGGGCAGGGGCGACCTCCGTC
ATCGCTGATAGTGATGGATGTGGAGAAGAAGAAGGGGGTGTATGACTTCA
TGGTCCGGGTAGGGTGGATCACGCCCCGAG
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Synonyms
Publications