jgi.p|Nanoce1779_2|581626, mRNA_2796 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|581626
Unique Name	mRNA_2796
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1585
Alignment location	scaffold_5:1211789..1213833 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	581712
Track	FilteredModels2
ProteinId	581626

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_5	supercontig	scaffold_5:1211789..1213833 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|581626	gene_2796	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|581626	mRNA_2796-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2796	CDS_2796	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_5:1211789..1213833+
coding sequence from alignment at scaffold_5:1211789..1213833+

mRNA sequence

>mRNA_2796 ID=mRNA_2796|Name=jgi.p|Nanoce1779_2|581626|organism=Nannochloropsis oceanica|type=mRNA|length=1585bp
AGGCAAAATTTGACGACCGCAAATGGCCAGGCAGCGCGGTATATCCAGAA
TGGTGGGGACTTACCCACCACCCTCCATCGTCGGCCTGCTTACCCTGCTA
CTCTTGCCGCCCTCCACCATCGTCCACGCTTTTCATCCTCTTCTCTACCA
TCATGGCAACTACCTGACCTTTCCACGCGCCACTCCCCTCCCCGCTACTG
CCCTCAATCCCCTGGTGTCCTCTCTCTCTCCCTCCTTCGCCTCCCCGCAA
CTGCCCACCCTCCCCCTCCTCCCCCTTCCCACAACCCTCCTCCCCTCCGT
CGAACGCGTCTCCGAAGCTGGGGGCAAGCTTCGGCTCCGCGGTATGTCCC
TTGCGGACATCACCATCCTCCTGACGTACCTCAATATTGGACCCAATCCC
GAGGTCAAGTCCGCCGCCGTCTTCAAATGGCTCTATCACAGAGACCTCAT
GGTCCATCACTCTATCTTCGAAGCCCTTTCCTCCCCAGCCAACACCGCTG
CCTGCTGCCTCTCTCGGCAGCTTTGCCTCGCCCTGGACGCTGCCACTACA
TTGGAAGATGGCCTAAAACTAATCGACATCAAACACGCAAAAGACGGGAC
GAAGAAACTCGTGATGCAAATCACGTCCGGCCCTGCCAAGGGCAAGGCAG
TCGAGTCCGTCCTCATCCCCATGGTGCGGGGACCGCAACAGGCACCACGC
TACACGCTCTGCGTCTCCTCACAAAGTGGCTGTGCCATGGACTGTGCCTT
CTGTTAGGGTCACTGAGCGCAGGGCTGATTGTTGGGCAATATGTGCTGGC
ACGCTCGGTGGTGAGGAATGAAGGGAAGGAGGGTGGAGAGGGAGAACGGC
CTATTTTGAGGATGGTATTTATGGGAATGGGGGAGCCCTTTGATAATTAT
GATAATGTGATGAAGGCCCTCTCCATCCTGACTGAGCAGAGGGGGAAGCT
CCTCCTGGGGCCTAATCAAATCACTGTCTCCACCGTGGGTCTCGTACCCT
TAATCGACCGGTTTGTGGAGGAGAGCCGGTGCATGCTAGCGGTATCGTTG
CATGCCACGACTGATGAGATTCGCAGCTCCTTCATGCCGATCAACCGTCG
GTATCCTCTGGCCACCTCCCTCCTTCCCTCCCTCCATGCCCATTTCCCCC
TGCCTGTCCTCGAGGAGGGGAGGGAGGGGAGGGCGGGACAGAGGACGAGG
AGGAGGAGGGGACCCGTGGCGCTGGAGTACGTGATGATGGAGGGGGTGAA
CGACACGGAGGAGGACGCAGAGCGACTGGCGGCCATGACGGAGGGCATGG
ACTGTGTGGTTAATTTGATTGAGTTCAACACGCATGAGGGCGCAGTCTTC
CTCCCTTCCTCCAAAGACAAAATTCAAACTTTCCGCAGCATCCTCAAGAA
GCATGGCCGCTTATCCACCCTGCGAGAAAGCAAAGGGGCCGAGGAGATGG
GGGCCTGTGGACAGGTGGGCGATCTGGCCATGGCGCGAAAGTTCAAGTCC
AAGGGGGGGAGGAGGGACGGGAGGGAGGGAGGTAAGGAGGGAATGTAGAG
TGATGGAAATGTATTTTAACAGCAACTCGGCAGGG

protein sequence of jgi.p|Nanoce1779_2|581626

>mRNA_2796-protein ID=mRNA_2796-protein|Name=jgi.p|Nanoce1779_2|581626|organism=Nannochloropsis oceanica|type=polypeptide|length=374bp
MALSQRPHGPSLYLRSPFLPSQHRCLLPLSAALPRPGRCHYIGRWPKTNR
HQTRKRRDEETRDANHVRPCQGQGSRVRPHPHGAGTATGTTLHALRLLTK
WLCHGLCLLLGSLSAGLIVGQYVLARSVVRNEGKEGGEGERPILRMVFMG
MGEPFDNYDNVMKALSILTEQRGKLLLGPNQITVSTVGLVPLIDRFVEES
RCMLAVSLHATTDEIRSSFMPINRRYPLATSLLPSLHAHFPLPVLEEGRE
GRAGQRTRRRRGPVALEYVMMEGVNDTEEDAERLAAMTEGMDCVVNLIEF
NTHEGAVFLPSSKDKIQTFRSILKKHGRLSTLRESKGAEEMGACGQVGDL
AMARKFKSKGGRRDGREGGKEGM*

mRNA from alignment at scaffold_5:1211789..1213833+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2796 ID=mRNA_2796|Name=jgi.p|Nanoce1779_2|581626|organism=Nannochloropsis oceanica|type=mRNA|length=2045bp|location=Sequence derived from alignment at scaffold_5:1211789..1213833+ (Nannochloropsis oceanica)
AGGCAAAATTTGACGACCGCAAATGGCCAGGCAGCGCGGTATATCCAGAA
TGGTGGGGACTTACCCACCACCCTCCATCGTCGGCCTGCTTACCCTGCTA
CTCTTGCCGCCCTCCACCATCGTCCACGCTTTTCATCCTCTTCTCTACCA
TCATGGCAACTACCTGACCTTTCCACGCGCCACTCCCCTCCCCGCTACTG
CCCTCAATCCCCTGGTGTCCTCTCTCTCTCCCTCCTTCGCCTCCCCGCAA
CTGCCCACCCTCCCCCTCCTCCCCCTTCCCACAACCCTCCTCCCCTCCGT
CGAACGCGTCTCCGAAGCTGGGGGCAAGCTTCGGCTCCGCGGTATGTCCC
TTGCGGACATCACCATCCTCCTGACGTACCTCAATATTGGACCCAATCCC
GAGGTCAAGTCCGCCGCCGTCTTCAAATGGCTCTATCACAGAGACCTCAT
GGTCCATCACTCTATCTTCGAAGCCCTTTCCTCCCCAGCCAACACCGCTG
CCTGCTGCCTCTCTCGGCAGCTTTGCCTCGCCCTGGACGCTGCCACTACA
TTGGAAGATGGCCTAAAACTAATCGACATCAAACACGCAAAAGACGGGAC
GAAGAAACTCGTGATGCAAATCACGTCCGGCCCTGCCAAGGGCAAGGCAG
TCGAGTCCGTCCTCATCCCCATGGTGCGGGGACCGCAACAGGCACCACGC
TACACGCTCTGCGTCTCCTCACAAAGTGGCTGTGCCATGGACTGTGCCTT
CTGTTAGGGTCACTGAGCGCAGGGCTGATTGTTGGGCAATATGTGCTGGC
ACGCTCGGTGGTGAGGAATGAAGGGAAGGAGGGTGGAGAGGGAGAACGGC
CTATTTTGAGGATGGTATTTATGGGAATGGGGGAGCCCTTTGATAATTAT
GATAATGTGATGAAGGTACGTACGGGAGGAGAGGGAGGGAGGGAGGAGAG
GGAGGGAGGGGAGAGAGGAACGAGGACCGAGTCGCCCAAGAAAGAAGTTC
GCGGATGCGCACTACGGCAAGTACAAAGAGCCAAATAAATCTACCAACCA
CACTGTCCCTCCCTTCCTCCCTCCCTCCCTTCGATCCCTCCAGGCCCTCT
CCATCCTGACTGAGCAGAGGGGGAAGCTCCTCCTGGGGCCTAATCAAATC
ACTGTCTCCACCGTGGGTCTCGTACCCTTAATCGACCGGTTTGTGGAGGA
GAGCCGGTGCATGCTAGCGGTATCGTTGCATGCCACGACTGATGAGGTGC
ATGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGAGAGGGAGGGAGGGAG
GGAAAAACCTTAGCCGCTGCAACACTTTCTCGGACACTCTCCCGAACCTC
CTCCTGTCCATCCATCCCTCCCTGCTTCCCTCAGATTCGCAGCTCCTTCA
TGCCGATCAACCGTCGGTATCCTCTGGCCACCTCCCTCCTTCCCTCCCTC
CATGCCCATTTCCCCCTGCCTGTCCTCGAGGAGGGGAGGGAGGGGAGGGC
GGGACAGAGGACGAGGAGGAGGAGGGGACCCGTGGCGCTGGAGTACGTGA
TGATGGAGGGGGTGAACGACACGGAGGAGGACGCAGAGCGACTGGCGGCC
ATGACGGAGGGCATGGACTGTGTGGTTAATTTGATTGAGTTCAACACGCA
TGAGGGTAGGTTGGCGAGGGAGGGAGGAGGGAGGGAGGGAGGGAGGCCTG
ACAAAGAGGAAGATAGAGACGATAGATGATGTATTCTTCTCTTGTTGCAC
CCAGGCCCTTACACACTTCCTCCTTCCCTCCCTTCTTATCTCCCCCCAGG
CGCAGTCTTCCTCCCTTCCTCCAAAGACAAAATTCAAACTTTCCGCAGCA
TCCTCAAGAAGCATGGCCGCTTATCCACCCTGCGAGAAAGCAAAGGGGCC
GAGGAGATGGGGGCCTGTGGACAGGTGGGCGATCTGGCCATGGCGCGAAA
GTTCAAGTCCAAGGGGGGGAGGAGGGACGGGAGGGAGGGAGGTAAGGAGG
GAATGTAGAGTGATGGAAATGTATTTTAACAGCAACTCGGCAGGG

Coding sequence (CDS) from alignment at scaffold_5:1211789..1213833+

>mRNA_2796 ID=mRNA_2796|Name=jgi.p|Nanoce1779_2|581626|organism=Nannochloropsis oceanica|type=CDS|length=4488bp|location=Sequence derived from alignment at scaffold_5:1211789..1213833+ (Nannochloropsis oceanica)
ATGGCTCTATCACAGAGACCTCATGGTCCATCACTCTATCTTCGAAGCCC
TTTCCTCCCCAGCCAACACCGCTGCCTGCTGCCTCTCTCGGCAGCTTTGC
CTCGCCCTGGACGCTGCCACTACATTGGAAGATGGCCTAAAACTAATCGA
CATCAAACACGCAAAAGACGGGACGAAGAAACTCGTGATGCAAATCACGT
CCGGCCCTGCCAAGGGCAAGGCAGTCGAGTCCGTCCTCATCCCCATGGTG
CGGGGACCGCAACAGGCACCACGCTACACGCTCTGCGTCTCCTCACAAAG
TGGCTGTGCCATGGACTGTGCCTTCTGTTAGGGTCACTGAGCGCAGGGCT
GATTGTTGGGCAATATGTGCTGGCACGCTCGGTGGTGAGGAATGAAGGGA
AGGAGGGTGGAGAGGGAGAACGGCCTATTTTGAGGATGGTATTTATGGGA
ATGGGGGAGCCCTTTGATAATTATGATAATGTGATGAAGGCCCTCTCCAT
CCTGACTGAGCAGAGGGGGAAGCTCCTCCTGGGGCCTAATCAAATCACTG
TCTCCACCGTGGGTCTCGTACCCTTAATCGACCGGTTTGTGGAGGAGAGC
CGGTGCATGCTAGCGGTATCGTTGCATGCCACGACTGATGAGATTCGCAG
CTCCTTCATGCCGATCAACCGTCGGTATCCTCTGGCCACCTCCCTCCTTC
CCTCCCTCCATGCCCATTTCCCCCTGCCTGTCCTCGAGGAGGGGAGGGAG
GGGAGGGCGGGACAGAGGACGAGGAGGAGGAGGGGACCCGTGGCGCTGGA
GTACGTGATGATGGAGGGGGTGAACGACACGGAGGAGGACGCAGAGCGAC
TGGCGGCCATGACGGAGGGCATGGACTGTGTGGTTAATTTGATTGAGTTC
AACACGCATGAGGGCGCAGTCTTCCTCCCTTCCTCCAAAGACAAAATTCA
AACTTTCCGCAGCATCCTCAAGAAGCATGGCCGCTTATCCACCCTGCGAG
AAAGCAAAGGGGCCGAGGAGATGGGGGCCTGTGGACAGGTGGGCGATCTG
GCCATGGCGCGAAAGTTCAAGTCCAAGGGGGGGAGGAGGGACGGGAGGGA
GGGAGGTAAGGAGGGAATGTAGATGGCTCTATCACAGAGACCTCATGGTC
CATCACTCTATCTTCGAAGCCCTTTCCTCCCCAGCCAACACCGCTGCCTG
CTGCCTCTCTCGGCAGCTTTGCCTCGCCCTGGACGCTGCCACTACATTGG
AAGATGGCCTAAAACTAATCGACATCAAACACGCAAAAGACGGGACGAAG
AAACTCGTGATGCAAATCACGTCCGGCCCTGCCAAGGGCAAGGCAGTCGA
GTCCGTCCTCATCCCCATGGTGCGGGGACCGCAACAGGCACCACGCTACA
CGCTCTGCGTCTCCTCACAAAGTGGCTGTGCCATGGACTGTGCCTTCTGT
TAGGGTCACTGAGCGCAGGGCTGATTGTTGGGCAATATGTGCTGGCACGC
TCGGTGGTGAGGAATGAAGGGAAGGAGGGTGGAGAGGGAGAACGGCCTAT
TTTGAGGATGGTATTTATGGGAATGGGGGAGCCCTTTGATAATTATGATA
ATGTGATGAAGGCCCTCTCCATCCTGACTGAGCAGAGGGGGAAGCTCCTC
CTGGGGCCTAATCAAATCACTGTCTCCACCGTGGGTCTCGTACCCTTAAT
CGACCGGTTTGTGGAGGAGAGCCGGTGCATGCTAGCGGTATCGTTGCATG
CCACGACTGATGAGATTCGCAGCTCCTTCATGCCGATCAACCGTCGGTAT
CCTCTGGCCACCTCCCTCCTTCCCTCCCTCCATGCCCATTTCCCCCTGCC
TGTCCTCGAGGAGGGGAGGGAGGGGAGGGCGGGACAGAGGACGAGGAGGA
GGAGGGGACCCGTGGCGCTGGAGTACGTGATGATGGAGGGGGTGAACGAC
ACGGAGGAGGACGCAGAGCGACTGGCGGCCATGACGGAGGGCATGGACTG
TGTGGTTAATTTGATTGAGTTCAACACGCATGAGGGCGCAGTCTTCCTCC
CTTCCTCCAAAGACAAAATTCAAACTTTCCGCAGCATCCTCAAGAAGCAT
GGCCGCTTATCCACCCTGCGAGAAAGCAAAGGGGCCGAGGAGATGGGGGC
CTGTGGACAGGTGGGCGATCTGGCCATGGCGCGAAAGTTCAAGTCCAAGG
GGGGGAGGAGGGACGGGAGGGAGGGAGGTAAGGAGGGAATGTAGATGGCT
CTATCACAGAGACCTCATGGTCCATCACTCTATCTTCGAAGCCCTTTCCT
CCCCAGCCAACACCGCTGCCTGCTGCCTCTCTCGGCAGCTTTGCCTCGCC
CTGGACGCTGCCACTACATTGGAAGATGGCCTAAAACTAATCGACATCAA
ACACGCAAAAGACGGGACGAAGAAACTCGTGATGCAAATCACGTCCGGCC
CTGCCAAGGGCAAGGCAGTCGAGTCCGTCCTCATCCCCATGGTGCGGGGA
CCGCAACAGGCACCACGCTACACGCTCTGCGTCTCCTCACAAAGTGGCTG
TGCCATGGACTGTGCCTTCTGTTAGGGTCACTGAGCGCAGGGCTGATTGT
TGGGCAATATGTGCTGGCACGCTCGGTGGTGAGGAATGAAGGGAAGGAGG
GTGGAGAGGGAGAACGGCCTATTTTGAGGATGGTATTTATGGGAATGGGG
GAGCCCTTTGATAATTATGATAATGTGATGAAGGCCCTCTCCATCCTGAC
TGAGCAGAGGGGGAAGCTCCTCCTGGGGCCTAATCAAATCACTGTCTCCA
CCGTGGGTCTCGTACCCTTAATCGACCGGTTTGTGGAGGAGAGCCGGTGC
ATGCTAGCGGTATCGTTGCATGCCACGACTGATGAGATTCGCAGCTCCTT
CATGCCGATCAACCGTCGGTATCCTCTGGCCACCTCCCTCCTTCCCTCCC
TCCATGCCCATTTCCCCCTGCCTGTCCTCGAGGAGGGGAGGGAGGGGAGG
GCGGGACAGAGGACGAGGAGGAGGAGGGGACCCGTGGCGCTGGAGTACGT
GATGATGGAGGGGGTGAACGACACGGAGGAGGACGCAGAGCGACTGGCGG
CCATGACGGAGGGCATGGACTGTGTGGTTAATTTGATTGAGTTCAACACG
CATGAGGGCGCAGTCTTCCTCCCTTCCTCCAAAGACAAAATTCAAACTTT
CCGCAGCATCCTCAAGAAGCATGGCCGCTTATCCACCCTGCGAGAAAGCA
AAGGGGCCGAGGAGATGGGGGCCTGTGGACAGGTGGGCGATCTGGCCATG
GCGCGAAAGTTCAAGTCCAAGGGGGGGAGGAGGGACGGGAGGGAGGGAGG
TAAGGAGGGAATGTAGATGGCTCTATCACAGAGACCTCATGGTCCATCAC
TCTATCTTCGAAGCCCTTTCCTCCCCAGCCAACACCGCTGCCTGCTGCCT
CTCTCGGCAGCTTTGCCTCGCCCTGGACGCTGCCACTACATTGGAAGATG
GCCTAAAACTAATCGACATCAAACACGCAAAAGACGGGACGAAGAAACTC
GTGATGCAAATCACGTCCGGCCCTGCCAAGGGCAAGGCAGTCGAGTCCGT
CCTCATCCCCATGGTGCGGGGACCGCAACAGGCACCACGCTACACGCTCT
GCGTCTCCTCACAAAGTGGCTGTGCCATGGACTGTGCCTTCTGTTAGGGT
CACTGAGCGCAGGGCTGATTGTTGGGCAATATGTGCTGGCACGCTCGGTG
GTGAGGAATGAAGGGAAGGAGGGTGGAGAGGGAGAACGGCCTATTTTGAG
GATGGTATTTATGGGAATGGGGGAGCCCTTTGATAATTATGATAATGTGA
TGAAGGCCCTCTCCATCCTGACTGAGCAGAGGGGGAAGCTCCTCCTGGGG
CCTAATCAAATCACTGTCTCCACCGTGGGTCTCGTACCCTTAATCGACCG
GTTTGTGGAGGAGAGCCGGTGCATGCTAGCGGTATCGTTGCATGCCACGA
CTGATGAGATTCGCAGCTCCTTCATGCCGATCAACCGTCGGTATCCTCTG
GCCACCTCCCTCCTTCCCTCCCTCCATGCCCATTTCCCCCTGCCTGTCCT
CGAGGAGGGGAGGGAGGGGAGGGCGGGACAGAGGACGAGGAGGAGGAGGG
GACCCGTGGCGCTGGAGTACGTGATGATGGAGGGGGTGAACGACACGGAG
GAGGACGCAGAGCGACTGGCGGCCATGACGGAGGGCATGGACTGTGTGGT
TAATTTGATTGAGTTCAACACGCATGAGGGCGCAGTCTTCCTCCCTTCCT
CCAAAGACAAAATTCAAACTTTCCGCAGCATCCTCAAGAAGCATGGCCGC
TTATCCACCCTGCGAGAAAGCAAAGGGGCCGAGGAGATGGGGGCCTGTGG
ACAGGTGGGCGATCTGGCCATGGCGCGAAAGTTCAAGTCCAAGGGGGGGA
GGAGGGACGGGAGGGAGGGAGGTAAGGAGGGAATGTAG

Synonyms

Publications