jgi.p|Nanoce1779_2|581624, mRNA_2795 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|581624
Unique NamemRNA_2795
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1001
Alignment locationscaffold_5:1205652..1206652 -

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Properties
Property NameValue
TranscriptId581710
TrackFilteredModels2
ProteinId581624
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:1205652..1206652 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|581624gene_2795Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|581624mRNA_2795-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2795CDS_2795Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2795 ID=mRNA_2795|Name=jgi.p|Nanoce1779_2|581624|organism=Nannochloropsis oceanica|type=mRNA|length=1001bp
ACAGCCCCACCTATACACACATCCCCATCGCACGTGCACACAATAAACAA
GACCCCAACATCAGTCACAATGGTTCTCTCCACCTCCAAAGCTTGCCTCT
TCCTTATCGTGTTTGCGGTCCTCACGCGCCAAGCCTCGGCTGTGCGCATG
AAGAAAACGCTCTTGAGCCTCTACCAAGACCCTCCCACTTTGGTCAATGG
GACTTACAGCAGCTTCGTCTTCGCCACGTACGAGGCCGTGCTTCGTTCGT
CCAAGGATGGACCCATGGTTGGCACACTCTTTGGCACCACTATCGTAAAC
ACGGTGCTCGATACTAGCTTACAAACGGATTTGCGCGATCGCCACCTGAC
CTTTGATTTTGGTCCCAAGGGACAGATTACGGCGGCTGGCATCGTCAGCT
ACCCGGCCAACACCTCCTTTCTCAATGTTGACGTCCCGACGACAATGGCC
GTGACTGGCGGGAGCTTCGACTACTTCGGCGCGACGGGCCAAGTCACGTC
GCAGCGCCTGGATGCCACAGGGGCACACACACAGACTTTTCAGATATATT
GCTTCAGAAAAGGGGGTGGCTTTCGTCTGAAGGCCCCTAAAGGCGCCAAG
TAAATATTCTAAACTGGTAAGCAGTGTCAAGGCATAATCTGTCGGGAAAT
TAAGCCGCAGTGACTTATTTTTCTTTGTAACTTTCCCGTAGTGCATTGAT
AGCACTGCGTCCGGTCTCAAAAACTGAAGTACAAAGGGCAAAAAGTAGGA
GAAAATCATTTAATCACATCAACAAGCTATTTATTTAAACAGTTTAATTC
TTCATAGTCCCACGTGCATTTCTTCCTTTCCGTTCTAAACAAAACGGGGT
CTGGGCACTAGTAAAGAGCAGCTATCTTTGGATAGTCTCGGGCCTACTTA
GGGCTGCATTGGTATTTTCGAACATGTGCAATTGTGTGTGCTGAGCAAAT
ATCATGCCTGTGACCAAATCAAATGAATCAAGTACCATTACGTAGAAACA
A
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protein sequence of jgi.p|Nanoce1779_2|581624

>mRNA_2795-protein ID=mRNA_2795-protein|Name=jgi.p|Nanoce1779_2|581624|organism=Nannochloropsis oceanica|type=polypeptide|length=178bp
MVLSTSKACLFLIVFAVLTRQASAVRMKKTLLSLYQDPPTLVNGTYSSFV
FATYEAVLRSSKDGPMVGTLFGTTIVNTVLDTSLQTDLRDRHLTFDFGPK
GQITAAGIVSYPANTSFLNVDVPTTMAVTGGSFDYFGATGQVTSQRLDAT
GAHTQTFQIYCFRKGGGFRLKAPKGAK*
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mRNA from alignment at scaffold_5:1205652..1206652-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2795 ID=mRNA_2795|Name=jgi.p|Nanoce1779_2|581624|organism=Nannochloropsis oceanica|type=mRNA|length=1001bp|location=Sequence derived from alignment at scaffold_5:1205652..1206652- (Nannochloropsis oceanica)
ACAGCCCCACCTATACACACATCCCCATCGCACGTGCACACAATAAACAA
GACCCCAACATCAGTCACAATGGTTCTCTCCACCTCCAAAGCTTGCCTCT
TCCTTATCGTGTTTGCGGTCCTCACGCGCCAAGCCTCGGCTGTGCGCATG
AAGAAAACGCTCTTGAGCCTCTACCAAGACCCTCCCACTTTGGTCAATGG
GACTTACAGCAGCTTCGTCTTCGCCACGTACGAGGCCGTGCTTCGTTCGT
CCAAGGATGGACCCATGGTTGGCACACTCTTTGGCACCACTATCGTAAAC
ACGGTGCTCGATACTAGCTTACAAACGGATTTGCGCGATCGCCACCTGAC
CTTTGATTTTGGTCCCAAGGGACAGATTACGGCGGCTGGCATCGTCAGCT
ACCCGGCCAACACCTCCTTTCTCAATGTTGACGTCCCGACGACAATGGCC
GTGACTGGCGGGAGCTTCGACTACTTCGGCGCGACGGGCCAAGTCACGTC
GCAGCGCCTGGATGCCACAGGGGCACACACACAGACTTTTCAGATATATT
GCTTCAGAAAAGGGGGTGGCTTTCGTCTGAAGGCCCCTAAAGGCGCCAAG
TAAATATTCTAAACTGGTAAGCAGTGTCAAGGCATAATCTGTCGGGAAAT
TAAGCCGCAGTGACTTATTTTTCTTTGTAACTTTCCCGTAGTGCATTGAT
AGCACTGCGTCCGGTCTCAAAAACTGAAGTACAAAGGGCAAAAAGTAGGA
GAAAATCATTTAATCACATCAACAAGCTATTTATTTAAACAGTTTAATTC
TTCATAGTCCCACGTGCATTTCTTCCTTTCCGTTCTAAACAAAACGGGGT
CTGGGCACTAGTAAAGAGCAGCTATCTTTGGATAGTCTCGGGCCTACTTA
GGGCTGCATTGGTATTTTCGAACATGTGCAATTGTGTGTGCTGAGCAAAT
ATCATGCCTGTGACCAAATCAAATGAATCAAGTACCATTACGTAGAAACA
A
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Coding sequence (CDS) from alignment at scaffold_5:1205652..1206652-

>mRNA_2795 ID=mRNA_2795|Name=jgi.p|Nanoce1779_2|581624|organism=Nannochloropsis oceanica|type=CDS|length=534bp|location=Sequence derived from alignment at scaffold_5:1205652..1206652- (Nannochloropsis oceanica)
ATGGTTCTCTCCACCTCCAAAGCTTGCCTCTTCCTTATCGTGTTTGCGGT
CCTCACGCGCCAAGCCTCGGCTGTGCGCATGAAGAAAACGCTCTTGAGCC
TCTACCAAGACCCTCCCACTTTGGTCAATGGGACTTACAGCAGCTTCGTC
TTCGCCACGTACGAGGCCGTGCTTCGTTCGTCCAAGGATGGACCCATGGT
TGGCACACTCTTTGGCACCACTATCGTAAACACGGTGCTCGATACTAGCT
TACAAACGGATTTGCGCGATCGCCACCTGACCTTTGATTTTGGTCCCAAG
GGACAGATTACGGCGGCTGGCATCGTCAGCTACCCGGCCAACACCTCCTT
TCTCAATGTTGACGTCCCGACGACAATGGCCGTGACTGGCGGGAGCTTCG
ACTACTTCGGCGCGACGGGCCAAGTCACGTCGCAGCGCCTGGATGCCACA
GGGGCACACACACAGACTTTTCAGATATATTGCTTCAGAAAAGGGGGTGG
CTTTCGTCTGAAGGCCCCTAAAGGCGCCAAGTAA
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Synonyms
Publications