jgi.p|Nanoce1779_2|581621, mRNA_2793 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|581621
Unique NamemRNA_2793
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1454
Alignment locationscaffold_5:1202876..1204481 +

Link to JBrowse

Properties
Property NameValue
TranscriptId581707
TrackFilteredModels2
ProteinId581621
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:1202876..1204481 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|581621gene_2793Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|581621mRNA_2793-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2793CDS_2793Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2793 ID=mRNA_2793|Name=jgi.p|Nanoce1779_2|581621|organism=Nannochloropsis oceanica|type=mRNA|length=1454bp
CTCGATGGTCGCTCCCAGATGCCTGCCCGTAGCCTCAAAGAAGCCATTGT
CCACCAAGAGCTGCCGATGATGAGACCATAAAATCATCGATGAGCAATAA
ATCCTCGAATAGACCAGCAATATCATCATGCGATCTCAGTATGGAATCTT
ACTCAAATGCGCCATTATAAATGTCGGATCTTCCCTAGGTATCCACTTCT
CGAATATCACCTCCCTCAAGGCCGTGAAATATGTAAGATGGACATGGTCA
GTGTGTTGGTGCACGTAGAAGGAAAGTGCATTGAAAGCAAAGAACATAAA
TAAACGAATTTCACATTGGCGAGTTCTCGCGCGCCAGTAGACATTCATAC
GTAAGACCATTCTCTCATCCTTCTAGATGCATAAACGGCATCCCCGTCCA
GCTTCATGTACGGATATGTTCTAAAAAACGTATTTTAAATGTAACGTCAA
AAGGTACATGGTACATGCTATGACGTCGTACAATCACGTTACTACACTTT
CAAACAACCACGAGTAGCCTGAAGACCAATGCAAACCACCGCCCATGATT
GTTCATCCTGTTACTTTGTCTTGTTACGTTGCGTTAGATGGAAATATTGC
AAGTCTTTCGTACATCGGCATTACATTAACATTATTCATTCAAATCGCGT
CACTGCTTGGGAAAACCACCATATGCCAGCTATCGAGGACTTAGCGATTG
ACTGTTGTTGCATGCGCGTCATCCTTAAGGGCAATGACACGATTGAGTGT
CACACTATCCCGTTCAACATGGTAGGGCCCTCCTGTCAATGCTTTGTCAT
AACACCTCCTGTGAACTTGCAAATCACCGCCTGTGAACTTGCAAAACATC
GCATATGAACTTGCAAACCACCGCCCGCCTGTGAGCGGACGAATATATGT
TGCACTGCATGAGAAATTTCACGCCACCGCCTGCCTTGATTGTTGTATTG
ATGTGTGTGTGTGTTATTCGGTTGTTTTTTTGTGGTTATGTTGTTGGTTT
TTTGTTAGTATTAGTGTTTTTGCCATGTAGATATGTTGTTACGTTGCGTG
TGCAGTGCTACGGTGTATTGCCGTGTGTCGTACATCGTGTTGTTGTGCAT
TGTGATATTGTGTTCTCGTGCAGTGTTGTCGTGTTTGTATTTGTTTGGTG
TGGTTTGTTTGTTTGTAACCGCGGAGCACCAAGTGGTCGCAACTATTTAT
CGAGGACTATTCCAGCCATTCAAGGCCTAAGCGATTTACTGTTGCGTGCC
ATCACTCTCAGTTATAACGCGATAAATATACAACTTTGCCATACCATCGC
CTGTGGACGTAAACCATTGCATGTGATATTTAAAATCACCGCCTGCACGT
GAATGACTGTTGCTTGGATGCCGTCCATTGCCGCTGGAAGGGTTCGGCCT
TCTCGACTTGCTGCCCGAGAAAGGAGGAAAGAGGATGAAGAGGACACCAC
CTGT
back to top

protein sequence of jgi.p|Nanoce1779_2|581621

>mRNA_2793-protein ID=mRNA_2793-protein|Name=jgi.p|Nanoce1779_2|581621|organism=Nannochloropsis oceanica|type=polypeptide|length=152bp
MLHCMRNFTPPPALIVVLMCVCVIRLFFCGYVVGFLLVLVFLPCRYVVTL
RVQCYGVLPCVVHRVVVHCDIVFSCSVVVFVFVWCGLFVCNRGAPSGRNY
LSRTIPAIQGLSDLLLRAITLSYNAINIQLCHTIACGRKPLHVIFKITAC
T*
back to top

mRNA from alignment at scaffold_5:1202876..1204481+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2793 ID=mRNA_2793|Name=jgi.p|Nanoce1779_2|581621|organism=Nannochloropsis oceanica|type=mRNA|length=1606bp|location=Sequence derived from alignment at scaffold_5:1202876..1204481+ (Nannochloropsis oceanica)
CTCGATGGTCGCTCCCAGATGCCTGCCCGTAGCCTCAAAGAAGCCATTGT
CCACCAAGAGCTGCCGATGATGAGACCATAAAATCATCGATGAGCAATAA
ATCCTCGAATAGACCAGCAATATCATCATGCGATCTCAGTATGGAATCTT
ACTCAAATGCGCCATTATAAATGTCGGATCTTCCCTAGGTATCCACTTCT
CGAATATCACCTCCCTCAAGGCCGTGAAATATGTAAGATGGACATGGTCA
GTGTGTTGGTGCACGTAGAAGGAAAGTGCATTGAAAGCAAAGAACATAAA
TAAACGAATTTCACATTGGCGAGTTCTCGCGCGCCAGTAGACATTCATAC
GTAAGACCATTCTCTCATCCTTCTAGATGCATAAACGGCATCCCCGTCCA
GCTTCATGTACGGATATGTTCTAAAAAACGTATTTTAAATGTAACGTCAA
AAGGTACATGGTACATGCTATGACGTCGTACAATCACGTTACTACACTTT
CAAACAACCACGAGTAGCCTGAAGACCAATGCAAACCACCGCCCATGATT
GTTCATCCTGTTACTTTGTCTTGTTACGTTGCGTTAGATGGAAATATTGC
AAGTCTTTCGTACATCGGCATTACATTAACATTATTCATTCAAATCGCGT
CACTGCTTGGGAAAACCACCATATGCCAGCTATCGAGGACTTAGCGATTG
ACTGTTGTTGCATGCGCGTCATCCTTAAGGGCAATGACACGATTGAGTGT
CACACTATCCCGTTCAACATGGTAGGGCCCTCCTGTCAATGCTTTGTCAT
AACACCTCCTGTGAACTTGCAAATCACCGCCTGTGAACTTGCAAAACATC
GCATATGAACTTGCAAACCACCGCCCGCCTGTGAGCGGACGAATATATGT
TGCACTGCATGAGAAATTTCACGCCACCGCCTGCCTTGATTGTTGTATTG
ATGTGTGTGTGTGTTATTCGGTTGTTTTTTTGTGGTTATGTTGTTGGTTT
TTTGTTAGTATTAGTGTTTTTGCCATGTAGATATGTTGTTACGTTGCGTG
TGCAGTGCTACGGTGTATTGCCGTGTGTCGTACATCGTGTTGTTGTGCAT
TGTGATATTGTGTTCTCGTGCAGTGTTGTCGTGTTTGTATTTGTTTGGTG
TGGTTTGTTTGTTTGTAACCGCGGAGCACCAAGTGGTCGCAACTATTTAT
CGAGGACTATTCCAGCCATTCAAGGCCTAAGCGATTTACTGTTGCGTGCC
ATCACTCTCAGTTATAACGCGATAAATATACAACTTTGCCATACCATCGC
CTGTGGACGTAAACCATTGCATGTGATATTTAAAATCACCGCCTGCACGT
GAATGACTGTTGCTGTGTAGTTATTGTTGTTGTTGCCGTGGAGTTATGTT
GCGTATTGCGTGGGTATTTGTTGCGTGTTGTTGTGCATTGCATTGTATTT
TCCCTTCATTCGCTCCCTCCCTCCCTCCTTCCCTCCCTCCTTCCCTCCCT
CCTTCCCTCGTTACCTTGGATGCCGTCCATTGCCGCTGGAAGGGTTCGGC
CTTCTCGACTTGCTGCCCGAGAAAGGAGGAAAGAGGATGAAGAGGACACC
ACCTGT
back to top

Coding sequence (CDS) from alignment at scaffold_5:1202876..1204481+

>mRNA_2793 ID=mRNA_2793|Name=jgi.p|Nanoce1779_2|581621|organism=Nannochloropsis oceanica|type=CDS|length=456bp|location=Sequence derived from alignment at scaffold_5:1202876..1204481+ (Nannochloropsis oceanica)
ATGTTGCACTGCATGAGAAATTTCACGCCACCGCCTGCCTTGATTGTTGT
ATTGATGTGTGTGTGTGTTATTCGGTTGTTTTTTTGTGGTTATGTTGTTG
GTTTTTTGTTAGTATTAGTGTTTTTGCCATGTAGATATGTTGTTACGTTG
CGTGTGCAGTGCTACGGTGTATTGCCGTGTGTCGTACATCGTGTTGTTGT
GCATTGTGATATTGTGTTCTCGTGCAGTGTTGTCGTGTTTGTATTTGTTT
GGTGTGGTTTGTTTGTTTGTAACCGCGGAGCACCAAGTGGTCGCAACTAT
TTATCGAGGACTATTCCAGCCATTCAAGGCCTAAGCGATTTACTGTTGCG
TGCCATCACTCTCAGTTATAACGCGATAAATATACAACTTTGCCATACCA
TCGCCTGTGGACGTAAACCATTGCATGTGATATTTAAAATCACCGCCTGC
ACGTGA
back to top
Synonyms
Publications