jgi.p|Nanoce1779_2|581613, mRNA_2789 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|581613
Unique Name	mRNA_2789
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	3225
Alignment location	scaffold_5:1191248..1194472 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	581699
Track	FilteredModels2
ProteinId	581613

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_5	supercontig	scaffold_5:1191248..1194472 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|581613	gene_2789	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|581613	mRNA_2789-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2789	CDS_2789	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_5:1191248..1194472-
coding sequence from alignment at scaffold_5:1191248..1194472-

mRNA sequence

>mRNA_2789 ID=mRNA_2789|Name=jgi.p|Nanoce1779_2|581613|organism=Nannochloropsis oceanica|type=mRNA|length=3225bp
AGGGCGGGTGTTTAGATTAAAATTCATCACAAGCCCACTGCACAAAGATG
AAGGACGCCCTACCTCAGCAGTCAATCACTTTCCAACTTCTCAAAATTAC
AACACATTGTATTAAACGAATGAGAGCCACGGCCTCCCAAGGCATCGCGG
CGTCGTGGAGATGGAGGGCCCTCACTGCGGTAGCCGTAGTGTCTGGAGCC
CTCGCCCTGGCCGCAATGGCGCAGCTGCAGCAAGGGACGACGATCCTCGA
AAGGGGTTGGACGGCTCCTGGAGACAGTCCGAGGGAATCTTCTCAGCCGT
CGCCTCCGCCCCGGAGCCACTGTGAGGTGATCGCCGACCCGACGGTCCGG
CGCCCGAGGGTCCTGGTAACTGACATACTGTTCCCGACACCCTTGTCGGC
CTGGCGCTTAAATGAGCTTACTGCGTGGATGGGCGAGGTCGACCTGGACA
TCCTGGTCACTCGTCGTGCCGACGGGTTCTCCGCGGACTGGGAGCCGATC
CAAGAGAGCCACTGCCTTGCGGACTACAACGTTTTCGTGTTCACGGAGGC
CCACAGAGGATCCGTGGAGGGCATCAACTCCTTGGCCAACGGGACCTTCG
ACACGTCTCCGTTCCTGGGTCACTGGCCTGCGGAGTACCTCCTGCGTCCG
CGGAAGTTCGGGACCTCATCCCCGTCGTTGAAGGACTACGATTGGGTCCA
TCACATCTTCCTCAACGCCTACGAGTTCTTCAACAAAGCGCTTCCTGGCT
ACCCTCAGCGACAACAGAGCATCCACCTGTACCCCGGCGGACGATTCTTC
ATTGATCAAGAGTACACACTACCCCCCGAGGTCACCCTCTTCACGACGCA
GTCGTTCGTTCGGGATCATGCCGACAAGTGCTTTCCGAAGAACCCAAAGG
TGGACGTCTTCGGAGGCCCCATGCTGGCCAAGGACGCGGTCAAAGCTCGG
AAGTGGCTCCACGAGCCAGGCGCCCGCATCAGCGCGTGCTTTACATCACT
GGGGGACAGGCGTGAGAAGGGTGCGGACCTTTACGTCAGGATCGCGGAGC
TGTACCGTTCCACCTACCCTCAAGACAATGTTACCTTCTACGGGATCGGG
AATGTGATTCCAGCCGTTGACATGGTTGTCTTCGATCCCATGCCTCAGCA
GCAGCTGGATGCCTTCTACCGAGACGAGGTCGACATCATCTTCAACCTCG
AGCGCACGCAGTATCGCAACGGCTGGCCCCTCGGGGTGGAAGGCTTGTTG
ATGGGGCTGGTCCTGTTCACGACGGACGCCTACAACCTGAACGACCGGAA
CGGGTTCAACTTCGGGTCCGAAGTCACCATTGTGACGGAGGGGCGAGAGG
ATCTCACTGTGGAGGCCATCCATCGGTACACGTTGAACCGTCACCTGCTC
CTCGAGCATAGCATGCGGGGTCAGGACCGGGCGTGGGAGATGTTTGGGCA
CGACCGACAGATGGGTGTGATCATATCAGAGGTTGGGCGCCGGATAAAGG
CCACCTCAGAGCTTAGGGCAGAATAAACAATTGTCATCACACACACATAG
ATATACAAACACACCGCCAACGGTAGTTTCACCTTTTTCAAGGACGTTGA
CGCCGATTAACAATTTGCGTTGCGTGATGAACGACGAGGAATGGATGTCA
ATGTAATTGTAGCTAGAAGAAGTGAAGAGCCTCGACATCACAGAATGAAG
GGCGTCGACAAAAGGACGGTCACAGATCATAGTCATGTAGGTATGTTGGC
TCTGGTCGTTCGCAGACAAAGCGAGTATGTACCTTCTTACAACTTGTGTA
TCCATAGAAAATAAAATTTATAACTCCATTAGGGGTACCCCTTGGCGGAC
ACTCTTGCCTCCATGCTAGGTATCATGTGGTACGTCATTGCATTGACCTG
CATCGAAAGGTGCTCGCTGTGCTGGAAAATGTCGCGATATTTCTTCTCTT
GTTGTAGATTCTCGTCCATCATTTCCCGCAATCTCAGAGCCAGCAACATG
GCACACTCTTGTCCATGCTTTATCGTATGGCGAGATCGGATGAATCTTGA
GCATCTTTCACACGTTTTTCCGGTGACGGCGAGCGTAAGGCCCAGTAGTG
ACCATGAATTTCTAGAACATTCGATGAAGACCCCCATGTGCCACCGAACC
TTCCCGCAATGGAACCAGCTCGGAATTTGCACCTGTTAGAGTCTCAATTC
CATAGCCTTGTTTTTCATTTTGTTCCAGTGTATTTTTGGTTTGCGCTCTC
CTCGTCATTTTCTGGCCTGCTTTATGGATTGTGATACTTCTTGGCAGCCA
AAGGCCCAGCCTATCTGATGTCAATGTCCAGACATAAACAGCGTACACAG
AGGGGGCTACTCATGGGACATCCCTCGGTACCGGTAGGGGCCTTTTTTCC
TTGACGTTAAAGCTTCGAGAAGCACTTATATACGACAAATTACAACAGAT
TAGGACGAATAACACAAGTTAATGAATAAATTCGTCTCCTTGGACGTGTC
CAGGGCTTTTTCTCCTGCATCGAGCACACCGAACTCGACCTCAATTTGCA
CAAAAATTGCCGGACATGTTGTTGCCATTTCTTTGGTGGCAAAGGAGACT
CGTAAGTCGAGTATAATCGGAGTGACGTAGATGCGGGTGGGGCCTTTAGT
AGGTCCTCCGGTGTATACCTCATGACCCAGGGCGGGCTTATTTGTTTGCT
CATAATGTTGCGCGGGCAATGGTGTGTTGATATCCCTGAAAGATAAGCGG
TTGTACCTGATCCCATGTCGCCTGGTGACCAGACTGAGATGGCGACGGAA
ATCAAGTTTGTCGAGAGCAAGGCGGCGGCGCAGATCGCTCGTGCCCAGGG
GGAGATCCCCCCTTTGTCTGCGTGTCTGTGTCGTTTGCGTTGCAATCTTT
GTTATGCGGACAAGGGCCCGCGTCAAGGTGTTCACGAACACGCACATCCA
TACACACCCAACAGGAAAGGGACGCGTGCTGCGGGGGGACTTCTCCTCGA
CAGCCCACACGGGTCCGGAGACGAGCAGTGGAGAGGCGACCCGTCGAAGG
AAGGGGCAGACACGGTGGGAAGGAGGGAGGAAGTCATGGTATGAGTCAAT
GAATTGTAGCGGAAGCTTTGGACCCCGGAAGAAAGGCACGGAGGGGCGTG
CTAGAGGCGGTGTTGTGTTGTTAATAGTGCCAGCACCAAGGCCTGTTTGC
GTAATATACACACATACTACTTAGA

protein sequence of jgi.p|Nanoce1779_2|581613

>mRNA_2789-protein ID=mRNA_2789-protein|Name=jgi.p|Nanoce1779_2|581613|organism=Nannochloropsis oceanica|type=polypeptide|length=493bp
MKDALPQQSITFQLLKITTHCIKRMRATASQGIAASWRWRALTAVAVVSG
ALALAAMAQLQQGTTILERGWTAPGDSPRESSQPSPPPRSHCEVIADPTV
RRPRVLVTDILFPTPLSAWRLNELTAWMGEVDLDILVTRRADGFSADWEP
IQESHCLADYNVFVFTEAHRGSVEGINSLANGTFDTSPFLGHWPAEYLLR
PRKFGTSSPSLKDYDWVHHIFLNAYEFFNKALPGYPQRQQSIHLYPGGRF
FIDQEYTLPPEVTLFTTQSFVRDHADKCFPKNPKVDVFGGPMLAKDAVKA
RKWLHEPGARISACFTSLGDRREKGADLYVRIAELYRSTYPQDNVTFYGI
GNVIPAVDMVVFDPMPQQQLDAFYRDEVDIIFNLERTQYRNGWPLGVEGL
LMGLVLFTTDAYNLNDRNGFNFGSEVTIVTEGREDLTVEAIHRYTLNRHL
LLEHSMRGQDRAWEMFGHDRQMGVIISEVGRRIKATSELRAE*

mRNA from alignment at scaffold_5:1191248..1194472-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2789 ID=mRNA_2789|Name=jgi.p|Nanoce1779_2|581613|organism=Nannochloropsis oceanica|type=mRNA|length=3225bp|location=Sequence derived from alignment at scaffold_5:1191248..1194472- (Nannochloropsis oceanica)
AGGGCGGGTGTTTAGATTAAAATTCATCACAAGCCCACTGCACAAAGATG
AAGGACGCCCTACCTCAGCAGTCAATCACTTTCCAACTTCTCAAAATTAC
AACACATTGTATTAAACGAATGAGAGCCACGGCCTCCCAAGGCATCGCGG
CGTCGTGGAGATGGAGGGCCCTCACTGCGGTAGCCGTAGTGTCTGGAGCC
CTCGCCCTGGCCGCAATGGCGCAGCTGCAGCAAGGGACGACGATCCTCGA
AAGGGGTTGGACGGCTCCTGGAGACAGTCCGAGGGAATCTTCTCAGCCGT
CGCCTCCGCCCCGGAGCCACTGTGAGGTGATCGCCGACCCGACGGTCCGG
CGCCCGAGGGTCCTGGTAACTGACATACTGTTCCCGACACCCTTGTCGGC
CTGGCGCTTAAATGAGCTTACTGCGTGGATGGGCGAGGTCGACCTGGACA
TCCTGGTCACTCGTCGTGCCGACGGGTTCTCCGCGGACTGGGAGCCGATC
CAAGAGAGCCACTGCCTTGCGGACTACAACGTTTTCGTGTTCACGGAGGC
CCACAGAGGATCCGTGGAGGGCATCAACTCCTTGGCCAACGGGACCTTCG
ACACGTCTCCGTTCCTGGGTCACTGGCCTGCGGAGTACCTCCTGCGTCCG
CGGAAGTTCGGGACCTCATCCCCGTCGTTGAAGGACTACGATTGGGTCCA
TCACATCTTCCTCAACGCCTACGAGTTCTTCAACAAAGCGCTTCCTGGCT
ACCCTCAGCGACAACAGAGCATCCACCTGTACCCCGGCGGACGATTCTTC
ATTGATCAAGAGTACACACTACCCCCCGAGGTCACCCTCTTCACGACGCA
GTCGTTCGTTCGGGATCATGCCGACAAGTGCTTTCCGAAGAACCCAAAGG
TGGACGTCTTCGGAGGCCCCATGCTGGCCAAGGACGCGGTCAAAGCTCGG
AAGTGGCTCCACGAGCCAGGCGCCCGCATCAGCGCGTGCTTTACATCACT
GGGGGACAGGCGTGAGAAGGGTGCGGACCTTTACGTCAGGATCGCGGAGC
TGTACCGTTCCACCTACCCTCAAGACAATGTTACCTTCTACGGGATCGGG
AATGTGATTCCAGCCGTTGACATGGTTGTCTTCGATCCCATGCCTCAGCA
GCAGCTGGATGCCTTCTACCGAGACGAGGTCGACATCATCTTCAACCTCG
AGCGCACGCAGTATCGCAACGGCTGGCCCCTCGGGGTGGAAGGCTTGTTG
ATGGGGCTGGTCCTGTTCACGACGGACGCCTACAACCTGAACGACCGGAA
CGGGTTCAACTTCGGGTCCGAAGTCACCATTGTGACGGAGGGGCGAGAGG
ATCTCACTGTGGAGGCCATCCATCGGTACACGTTGAACCGTCACCTGCTC
CTCGAGCATAGCATGCGGGGTCAGGACCGGGCGTGGGAGATGTTTGGGCA
CGACCGACAGATGGGTGTGATCATATCAGAGGTTGGGCGCCGGATAAAGG
CCACCTCAGAGCTTAGGGCAGAATAAACAATTGTCATCACACACACATAG
ATATACAAACACACCGCCAACGGTAGTTTCACCTTTTTCAAGGACGTTGA
CGCCGATTAACAATTTGCGTTGCGTGATGAACGACGAGGAATGGATGTCA
ATGTAATTGTAGCTAGAAGAAGTGAAGAGCCTCGACATCACAGAATGAAG
GGCGTCGACAAAAGGACGGTCACAGATCATAGTCATGTAGGTATGTTGGC
TCTGGTCGTTCGCAGACAAAGCGAGTATGTACCTTCTTACAACTTGTGTA
TCCATAGAAAATAAAATTTATAACTCCATTAGGGGTACCCCTTGGCGGAC
ACTCTTGCCTCCATGCTAGGTATCATGTGGTACGTCATTGCATTGACCTG
CATCGAAAGGTGCTCGCTGTGCTGGAAAATGTCGCGATATTTCTTCTCTT
GTTGTAGATTCTCGTCCATCATTTCCCGCAATCTCAGAGCCAGCAACATG
GCACACTCTTGTCCATGCTTTATCGTATGGCGAGATCGGATGAATCTTGA
GCATCTTTCACACGTTTTTCCGGTGACGGCGAGCGTAAGGCCCAGTAGTG
ACCATGAATTTCTAGAACATTCGATGAAGACCCCCATGTGCCACCGAACC
TTCCCGCAATGGAACCAGCTCGGAATTTGCACCTGTTAGAGTCTCAATTC
CATAGCCTTGTTTTTCATTTTGTTCCAGTGTATTTTTGGTTTGCGCTCTC
CTCGTCATTTTCTGGCCTGCTTTATGGATTGTGATACTTCTTGGCAGCCA
AAGGCCCAGCCTATCTGATGTCAATGTCCAGACATAAACAGCGTACACAG
AGGGGGCTACTCATGGGACATCCCTCGGTACCGGTAGGGGCCTTTTTTCC
TTGACGTTAAAGCTTCGAGAAGCACTTATATACGACAAATTACAACAGAT
TAGGACGAATAACACAAGTTAATGAATAAATTCGTCTCCTTGGACGTGTC
CAGGGCTTTTTCTCCTGCATCGAGCACACCGAACTCGACCTCAATTTGCA
CAAAAATTGCCGGACATGTTGTTGCCATTTCTTTGGTGGCAAAGGAGACT
CGTAAGTCGAGTATAATCGGAGTGACGTAGATGCGGGTGGGGCCTTTAGT
AGGTCCTCCGGTGTATACCTCATGACCCAGGGCGGGCTTATTTGTTTGCT
CATAATGTTGCGCGGGCAATGGTGTGTTGATATCCCTGAAAGATAAGCGG
TTGTACCTGATCCCATGTCGCCTGGTGACCAGACTGAGATGGCGACGGAA
ATCAAGTTTGTCGAGAGCAAGGCGGCGGCGCAGATCGCTCGTGCCCAGGG
GGAGATCCCCCCTTTGTCTGCGTGTCTGTGTCGTTTGCGTTGCAATCTTT
GTTATGCGGACAAGGGCCCGCGTCAAGGTGTTCACGAACACGCACATCCA
TACACACCCAACAGGAAAGGGACGCGTGCTGCGGGGGGACTTCTCCTCGA
CAGCCCACACGGGTCCGGAGACGAGCAGTGGAGAGGCGACCCGTCGAAGG
AAGGGGCAGACACGGTGGGAAGGAGGGAGGAAGTCATGGTATGAGTCAAT
GAATTGTAGCGGAAGCTTTGGACCCCGGAAGAAAGGCACGGAGGGGCGTG
CTAGAGGCGGTGTTGTGTTGTTAATAGTGCCAGCACCAAGGCCTGTTTGC
GTAATATACACACATACTACTTAGA

Coding sequence (CDS) from alignment at scaffold_5:1191248..1194472-

>mRNA_2789 ID=mRNA_2789|Name=jgi.p|Nanoce1779_2|581613|organism=Nannochloropsis oceanica|type=CDS|length=1479bp|location=Sequence derived from alignment at scaffold_5:1191248..1194472- (Nannochloropsis oceanica)
ATGAAGGACGCCCTACCTCAGCAGTCAATCACTTTCCAACTTCTCAAAAT
TACAACACATTGTATTAAACGAATGAGAGCCACGGCCTCCCAAGGCATCG
CGGCGTCGTGGAGATGGAGGGCCCTCACTGCGGTAGCCGTAGTGTCTGGA
GCCCTCGCCCTGGCCGCAATGGCGCAGCTGCAGCAAGGGACGACGATCCT
CGAAAGGGGTTGGACGGCTCCTGGAGACAGTCCGAGGGAATCTTCTCAGC
CGTCGCCTCCGCCCCGGAGCCACTGTGAGGTGATCGCCGACCCGACGGTC
CGGCGCCCGAGGGTCCTGGTAACTGACATACTGTTCCCGACACCCTTGTC
GGCCTGGCGCTTAAATGAGCTTACTGCGTGGATGGGCGAGGTCGACCTGG
ACATCCTGGTCACTCGTCGTGCCGACGGGTTCTCCGCGGACTGGGAGCCG
ATCCAAGAGAGCCACTGCCTTGCGGACTACAACGTTTTCGTGTTCACGGA
GGCCCACAGAGGATCCGTGGAGGGCATCAACTCCTTGGCCAACGGGACCT
TCGACACGTCTCCGTTCCTGGGTCACTGGCCTGCGGAGTACCTCCTGCGT
CCGCGGAAGTTCGGGACCTCATCCCCGTCGTTGAAGGACTACGATTGGGT
CCATCACATCTTCCTCAACGCCTACGAGTTCTTCAACAAAGCGCTTCCTG
GCTACCCTCAGCGACAACAGAGCATCCACCTGTACCCCGGCGGACGATTC
TTCATTGATCAAGAGTACACACTACCCCCCGAGGTCACCCTCTTCACGAC
GCAGTCGTTCGTTCGGGATCATGCCGACAAGTGCTTTCCGAAGAACCCAA
AGGTGGACGTCTTCGGAGGCCCCATGCTGGCCAAGGACGCGGTCAAAGCT
CGGAAGTGGCTCCACGAGCCAGGCGCCCGCATCAGCGCGTGCTTTACATC
ACTGGGGGACAGGCGTGAGAAGGGTGCGGACCTTTACGTCAGGATCGCGG
AGCTGTACCGTTCCACCTACCCTCAAGACAATGTTACCTTCTACGGGATC
GGGAATGTGATTCCAGCCGTTGACATGGTTGTCTTCGATCCCATGCCTCA
GCAGCAGCTGGATGCCTTCTACCGAGACGAGGTCGACATCATCTTCAACC
TCGAGCGCACGCAGTATCGCAACGGCTGGCCCCTCGGGGTGGAAGGCTTG
TTGATGGGGCTGGTCCTGTTCACGACGGACGCCTACAACCTGAACGACCG
GAACGGGTTCAACTTCGGGTCCGAAGTCACCATTGTGACGGAGGGGCGAG
AGGATCTCACTGTGGAGGCCATCCATCGGTACACGTTGAACCGTCACCTG
CTCCTCGAGCATAGCATGCGGGGTCAGGACCGGGCGTGGGAGATGTTTGG
GCACGACCGACAGATGGGTGTGATCATATCAGAGGTTGGGCGCCGGATAA
AGGCCACCTCAGAGCTTAGGGCAGAATAA

Synonyms

Publications