jgi.p|Nanoce1779_2|339922, mRNA_2788 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|339922
Unique NamemRNA_2788
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length613
Alignment locationscaffold_5:1192154..1192789 -

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Properties
Property NameValue
TranscriptId340008
TrackFilteredModels2
ProteinId339922
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:1192154..1192789 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|339922gene_2788Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|339922mRNA_2788-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2788CDS_2788Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2788 ID=mRNA_2788|Name=jgi.p|Nanoce1779_2|339922|organism=Nannochloropsis oceanica|type=mRNA|length=613bp
GACAAAAGGACGGTCACAGATCATAGTCATGTAGGTATGTTGGCTCTGGT
CGTTCGCAGACAAAGCGAGTATGTACCTTCTTACAACTTGTGTATCCATA
GAAAATAAAATTTATAACTCCATTAGGGGTACCCCTTGGCGGACACTCTT
GCCTCCATGCTAGGTATCATGTGGTACGTCATTGCATTGACCTGCATCGA
AAGGTGCTCGCTGTGCTGGAAAATGTCGCGATATTTCTTCTCTTGTTGTA
GATTCTCGTCCATCATTTCCCGCAATCTCAGAGCCAGCAACATGGCACAC
TCTTGTCCATGCTTTATCGTATGGCGAGATCGGATGAATCTTGAGCATCT
TTCACACGTTTTTCCGGTGACGGCGAGCGTAAGGCCCAGTAGTGACCATG
AATTTCTAGAACATTCGATGAAGACCCCCATGTGCCACCGAACCTTCCCG
CAATGGAACCAGCTCGGAATTTGCACCTGTTAGAGTCTCAATTCCATAGC
CTTGTTTTTCATTTTGTTCCAGTGTATTTTTGGTTTGCGCTCTCCTCGTC
ATTTTCTGGCCTGCTTTATGGATTGTGATACTTCTTGGCAGCCAAAGGCC
CAGCCTATCTGAT
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protein sequence of jgi.p|Nanoce1779_2|339922

>mRNA_2788-protein ID=mRNA_2788-protein|Name=jgi.p|Nanoce1779_2|339922|organism=Nannochloropsis oceanica|type=polypeptide|length=109bp
MLGIMWYVIALTCIERCSLCWKMSRYFFSCCRFSSIISRNLRASNMAHSC
PCFIVWRDRMNLEHLSHVFPVTASVRPSSDHEFLEHSMKTPMCHRTFPQW
NQLGICTC*
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mRNA from alignment at scaffold_5:1192154..1192789-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2788 ID=mRNA_2788|Name=jgi.p|Nanoce1779_2|339922|organism=Nannochloropsis oceanica|type=mRNA|length=636bp|location=Sequence derived from alignment at scaffold_5:1192154..1192789- (Nannochloropsis oceanica)
GACATCACAGAATGAAGGGCGTCGACAAAAGGACGGTCACAGATCATAGT
CATGTAGGTATGTTGGCTCTGGTCGTTCGCAGACAAAGCGAGTATGTACC
TTCTTACAACTTGTGTATCCATAGAAAATAAAATTTATAACTCCATTAGG
GGTACCCCTTGGCGGACACTCTTGCCTCCATGCTAGGTATCATGTGGTAC
GTCATTGCATTGACCTGCATCGAAAGGTGCTCGCTGTGCTGGAAAATGTC
GCGATATTTCTTCTCTTGTTGTAGATTCTCGTCCATCATTTCCCGCAATC
TCAGAGCCAGCAACATGGCACACTCTTGTCCATGCTTTATCGTATGGCGA
GATCGGATGAATCTTGAGCATCTTTCACACGTTTTTCCGGTGACGGCGAG
CGTAAGGCCCAGTAGTGACCATGAATTTCTAGAACATTCGATGAAGACCC
CCATGTGCCACCGAACCTTCCCGCAATGGAACCAGCTCGGAATTTGCACC
TGTTAGAGTCTCAATTCCATAGCCTTGTTTTTCATTTTGTTCCAGTGTAT
TTTTGGTTTGCGCTCTCCTCGTCATTTTCTGGCCTGCTTTATGGATTGTG
ATACTTCTTGGCAGCCAAAGGCCCAGCCTATCTGAT
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Coding sequence (CDS) from alignment at scaffold_5:1192154..1192789-

>mRNA_2788 ID=mRNA_2788|Name=jgi.p|Nanoce1779_2|339922|organism=Nannochloropsis oceanica|type=CDS|length=327bp|location=Sequence derived from alignment at scaffold_5:1192154..1192789- (Nannochloropsis oceanica)
ATGCTAGGTATCATGTGGTACGTCATTGCATTGACCTGCATCGAAAGGTG
CTCGCTGTGCTGGAAAATGTCGCGATATTTCTTCTCTTGTTGTAGATTCT
CGTCCATCATTTCCCGCAATCTCAGAGCCAGCAACATGGCACACTCTTGT
CCATGCTTTATCGTATGGCGAGATCGGATGAATCTTGAGCATCTTTCACA
CGTTTTTCCGGTGACGGCGAGCGTAAGGCCCAGTAGTGACCATGAATTTC
TAGAACATTCGATGAAGACCCCCATGTGCCACCGAACCTTCCCGCAATGG
AACCAGCTCGGAATTTGCACCTGTTAG
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Synonyms
Publications