jgi.p|Nanoce1779_2|628756, mRNA_2785 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|628756
Unique Name	mRNA_2785
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1128
Alignment location	scaffold_5:1180658..1181997 -

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Properties


Property Name	Value
TranscriptId	628842
Track	FilteredModels2
ProteinId	628756

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_5	supercontig	scaffold_5:1180658..1181997 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|628756	gene_2785	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|628756	mRNA_2785-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2785	CDS_2785	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_5:1180658..1181997-
coding sequence from alignment at scaffold_5:1180658..1181997-

mRNA sequence

>mRNA_2785 ID=mRNA_2785|Name=jgi.p|Nanoce1779_2|628756|organism=Nannochloropsis oceanica|type=mRNA|length=1128bp
CCGACCTCAAACACTGCCTCATTCCCCTTCCCTCCCTCCCACCACTACAC
CACAACAATATGCACCGCTTGCATGCTTGCCTCGCTGCTTGCTGCCATCA
TCAACCACGACCACCAGGGGGACAACATGCTTCGGCGCTTCACGGCGAAG
GCTGGGGCCATGGCACGGAGAGGGAGCACGCTTCCCGGGCCAGGAAAGGG
ACGCGTGCTGCGGGGGGGTTTCTCCTCGACAGCCCACACGGGGCCGGGCA
CGAGCAGTGGAGAGGAGCTCGGTAAGAAGTGGGCGACAATCTTCCAGGGC
ATTGGCGCGGTGCTAGGGGTTGCTGGTGCTACCGCTGTGGTCGTGCGTAC
TTTCGACCAGACTGAGATGGCGACGGAGATCAAGTATGTCCAGAGCAAGG
CGGCGGCGGAGATCGCGCAGGCGAAAGCGGAGATCGCGCGTGTGGAGGAC
AAGGCGGCGGCGGAGATCGCGCGTTTGGAGGACAAGCGGACAATGTCGGA
AGTGTTTTGGAAGGCGGAGGTGGAGCGGTTCAAGCGCGAGGTCCAACTGG
CTTACACTCAAGACTATGAGCCTTATCAGGCCGCGCTTGTGGACAAACGT
AAAAAGAGGGGAGGAACCGGCGGATTGGAGGAGAAGGAAGAGGAGAATTA
GGATTCGGGGCCCTACCTTAATATAAATGGAAATCATGTAGAAAGACACA
TTCAAAGACATGTACAGTGGACGGGGTTGTGCAGTAGAGAGATGGGCAGG
AGGGGGATAGGACTCATACACGAGAAACGTAATAACGAGGGCTCCCCACA
ACTTGTATCGAGCGAGTTTTTCCTTTGTCTTTTATGATTTGATGCACTGG
CTCATACCCATCTCCCCCACACTAACGCCGCCGACCCTGCTTTCGACTTG
TCCAACCAAGCCCCTGCCGCTTGACGGCAGCAGACCGAGGCGACCCGTCG
AAGGAGGGGGCAGACACGGTGGGAAGGAGGGAGGAAGTCATGGTATGAGT
CAATGGATTGTAGCGGAAGCTTTGGACCCCGGAAGAAAGGCACGGAGGGG
CGTGCTAGAGGCGGTGTTGTGTTGTTAATAGTGCCAGCACCAAGGCCTGT
TTGCGTAATATACACACATACTACTTAG

protein sequence of jgi.p|Nanoce1779_2|628756

>mRNA_2785-protein ID=mRNA_2785-protein|Name=jgi.p|Nanoce1779_2|628756|organism=Nannochloropsis oceanica|type=polypeptide|length=193bp
MLASLLAAIINHDHQGDNMLRRFTAKAGAMARRGSTLPGPGKGRVLRGGF
SSTAHTGPGTSSGEELGKKWATIFQGIGAVLGVAGATAVVVRTFDQTEMA
TEIKYVQSKAAAEIAQAKAEIARVEDKAAAEIARLEDKRTMSEVFWKAEV
ERFKREVQLAYTQDYEPYQAALVDKRKKRGGTGGLEEKEEEN*

mRNA from alignment at scaffold_5:1180658..1181997-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2785 ID=mRNA_2785|Name=jgi.p|Nanoce1779_2|628756|organism=Nannochloropsis oceanica|type=mRNA|length=1340bp|location=Sequence derived from alignment at scaffold_5:1180658..1181997- (Nannochloropsis oceanica)
CCGACCTCAAACACTGCCTCATTCCCCTTCCCTCCCTCCCACCACTACAC
CACAACAATATGCACCGCTTGCATGCTTGCCTCGCTGCTTGCTGCCATCA
TCAACCACGACCACCAGGGGGACAACATGCTTCGGCGCTTCACGGCGAAG
GCTGGGGCCATGGCACGGAGAGGGAGCACGCTTCCCGGGCCAGGTGAGGT
GGCGTGTGTGATGCATTTAGGAAGAACTCGGGCTTGTTGATGGGGTGGGA
GTGCGCGTTCAGTGCACGCGACCGCAGTCTGGCCGAGGCATGTTGATCCC
CCCTTTGTCTGCGTGTCTGTGTCGTTTGCGTTGCAATCTTTGTTATGCGG
ACAAGGGCCCGCGTCAAGGTGTTCACGCACACGCACATCCATACACACCC
AACAGGAAAGGGACGCGTGCTGCGGGGGGGTTTCTCCTCGACAGCCCACA
CGGGGCCGGGCACGAGCAGTGGAGAGGAGCTCGGTAAGAAGTGGGCGACA
ATCTTCCAGGGCATTGGCGCGGTGCTAGGGGTTGCTGGTGCTACCGCTGT
GGTCGTGCGTACTTTCGACCAGACTGAGATGGCGACGGAGATCAAGTATG
TCCAGAGCAAGGCGGCGGCGGAGATCGCGCAGGCGAAAGCGGAGATCGCG
CGTGTGGAGGACAAGGCGGCGGCGGAGATCGCGCGTTTGGAGGACAAGCG
GACAATGTCGGAAGTGTTTTGGAAGGCGGAGGTGGAGCGGTTCAAGCGCG
AGGTCCAACTGGCTTACACTCAAGACTATGAGCCTTATCAGGCCGCGCTT
GTGGACAAACGTAAAAAGAGGGGAGGAACCGGCGGATTGGAGGAGAAGGA
AGAGGAGAATTAGGATTCGGGGCCCTACCTTAATATAAATGGAAATCATG
TAGAAAGACACATTCAAAGACATGTACAGTGGACGGGGTTGTGCAGTAGA
GAGATGGGCAGGAGGGGGATAGGACTCATACACGAGAAACGTAATAACGA
GGGCTCCCCACAACTTGTATCGAGCGAGTTTTTCCTTTGTCTTTTATGAT
TTGATGCACTGGCTCATACCCATCTCCCCCACACTAACGCCGCCGACCCT
GCTTTCGACTTGTCCAACCAAGCCCCTGCCGCTTGACGGCAGCAGACCGA
GGCGACCCGTCGAAGGAGGGGGCAGACACGGTGGGAAGGAGGGAGGAAGT
CATGGTATGAGTCAATGGATTGTAGCGGAAGCTTTGGACCCCGGAAGAAA
GGCACGGAGGGGCGTGCTAGAGGCGGTGTTGTGTTGTTAATAGTGCCAGC
ACCAAGGCCTGTTTGCGTAATATACACACATACTACTTAG

Coding sequence (CDS) from alignment at scaffold_5:1180658..1181997-

>mRNA_2785 ID=mRNA_2785|Name=jgi.p|Nanoce1779_2|628756|organism=Nannochloropsis oceanica|type=CDS|length=1158bp|location=Sequence derived from alignment at scaffold_5:1180658..1181997- (Nannochloropsis oceanica)
GAAAGGGACGCGTGCTGCGGGGGGGTTTCTCCTCGACAGCCCACACGGGG
CCGGGCACGAGCAGTGGAGAGGAGCTCGGTAAGAAGTGGGCGACAATCTT
CCAGGGCATTGGCGCGGTGCTAGGGGTTGCTGGTGCTACCGCTGTGGTCG
TGCGTACTTTCGACCAGACTGAGATGGCGACGGAGATCAAGTATGTCCAG
AGCAAGGCGGCGGCGGAGATCGCGCAGGCGAAAGCGGAGATCGCGCGTGT
GGAGGACAAGGCGGCGGCGGAGATCGCGCGTTTGGAGGACAAGCGGACAA
TGTCGGAAGTGTTTTGGAAGGCGGAGGTGGAGCGGTTCAAGCGCGAGGTC
CAACTGGCTTACACTCAAGACTATGAGCCTTATCAGGCCGCGCTTGTGGA
CAAACGTAAAAAGAGGGGAGGAACCGGCGGATTGGAGGAGAAGGAAGAGG
AGAATTAGATGCTTGCCTCGCTGCTTGCTGCCATCATCAACCACGACCAC
CAGGGGGACAACATGCTTCGGCGCTTCACGGCGAAGGCTGGGGCCATGGC
ACGGAGAGGGAGCACGCTTCCCGGGCCAGGAAAGGGACGCGTGCTGCGGG
GGGGTTTCTCCTCGACAGCCCACACGGGGCCGGGCACGAGCAGTGGAGAG
GAGCTCGGTAAGAAGTGGGCGACAATCTTCCAGGGCATTGGCGCGGTGCT
AGGGGTTGCTGGTGCTACCGCTGTGGTCGTGCGTACTTTCGACCAGACTG
AGATGGCGACGGAGATCAAGTATGTCCAGAGCAAGGCGGCGGCGGAGATC
GCGCAGGCGAAAGCGGAGATCGCGCGTGTGGAGGACAAGGCGGCGGCGGA
GATCGCGCGTTTGGAGGACAAGCGGACAATGTCGGAAGTGTTTTGGAAGG
CGGAGGTGGAGCGGTTCAAGCGCGAGGTCCAACTGGCTTACACTCAAGAC
TATGAGCCTTATCAGGCCGCGCTTGTGGACAAACGTAAAAAGAGGGGAGG
AACCGGCGGATTGGAGGAGAAGGAAGAGGAGAATTAGATGCTTGCCTCGC
TGCTTGCTGCCATCATCAACCACGACCACCAGGGGGACAACATGCTTCGG
CGCTTCACGGCGAAGGCTGGGGCCATGGCACGGAGAGGGAGCACGCTTCC
CGGGCCAG

Synonyms

Publications