jgi.p|Nanoce1779_2|628755, mRNA_2784 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|628755
Unique NamemRNA_2784
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1096
Alignment locationscaffold_5:1178948..1180255 -

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Properties
Property NameValue
TranscriptId628841
TrackFilteredModels2
ProteinId628755
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:1178948..1180255 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|628755gene_2784Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|628755mRNA_2784-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2784CDS_2784Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2784 ID=mRNA_2784|Name=jgi.p|Nanoce1779_2|628755|organism=Nannochloropsis oceanica|type=mRNA|length=1096bp
CCGACCTCAAACACTGCCTCATTCCCCTTCCCTCCCTCCCACCACTACAC
CACAACAACATGCACCGCTTGCATGCTTGCCTCGCTGCTTGCTGCCTTCA
TCAACCACGACCACCAGGGGGACAACATGCTTCGGCGCTTCACGGCGAAG
GCTGGGGCCATGGTACGGAGAGGGAGCACGCTTCCCGGGCCAGGAAAGGG
ACGCGTGCTGCGGGGGGGCTTCTCCTCGACAGCCCACACGGGGCCGGGCA
CGAGCAGTGGAGAGGAGCTCGGTAAGAAGTGGGCGACAATCTTCCAGGGC
ATTGGCGCGGTGCTAGGGGTTGCTGGTGCTACCGCTGTGGTCGTGCGTAC
TTTCGACCAGACTGAGATCAGGCACATCGAGAGCAAGGCGGCGGCGGAGA
TGGCGCGTGTGGAGGACAAGGCGGCGGCGGAGATCGTGCGTGTGGAGGAC
AAGCGGACAATGTCGGAAGTGTTTTGGAAGGCGGAGGTGGAGCGGTTCAA
GCGCGAGGTCCAACTAGCTTACACTCAAGACTATGAGCCTTATCAGGCCG
CGCTTGTGGACAAACGTAAAAAGAGGGGAGGAACCGGCGGATTGGAGGAG
AAGGAAGAGGAGAATTAGGATTCGGGGCCCTACCTTAATATAAATAGAAA
TCATGTAGAAAGACACATTCAAAGACATGTACAGTGGACGGGGTTGTGCA
GTAGAGAGATGGGCAGGAGGGGGATAGGACTCATACACGAGAAACGTAAT
AACGAGGGCTCCCCACAACTTGTATCGAGCGAGTTTTTCCTTTGTCTTTT
ATGATTTGATGCACTGGCTCATATCCATCTCCCCCACACTAACGCCGCCG
ACCCTGCTTTCGACTTGTCCAACCAAGCCCCTGCCGCTTGACGGCAGCAG
ACCGAGGCGACCCGTCGAAGGAAGGGGCAGACGCGGTGGGAAGGAGGGAG
GAAGTCATGGTATGAGTCAATGGATTGTAGCGGAAGCTTTGGACCCCGGA
AGAAAGGCACGGAGGGGCGTGCTAGAGGCGGTGTTGTGTTGTTAATAGTG
CCAGCACCAAGGCCTGTTTGCGTAATATACACACATACTACTTAGA
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protein sequence of jgi.p|Nanoce1779_2|628755

>mRNA_2784-protein ID=mRNA_2784-protein|Name=jgi.p|Nanoce1779_2|628755|organism=Nannochloropsis oceanica|type=polypeptide|length=182bp
MLASLLAAFINHDHQGDNMLRRFTAKAGAMVRRGSTLPGPGKGRVLRGGF
SSTAHTGPGTSSGEELGKKWATIFQGIGAVLGVAGATAVVVRTFDQTEIR
HIESKAAAEMARVEDKAAAEIVRVEDKRTMSEVFWKAEVERFKREVQLAY
TQDYEPYQAALVDKRKKRGGTGGLEEKEEEN*
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mRNA from alignment at scaffold_5:1178948..1180255-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2784 ID=mRNA_2784|Name=jgi.p|Nanoce1779_2|628755|organism=Nannochloropsis oceanica|type=mRNA|length=1308bp|location=Sequence derived from alignment at scaffold_5:1178948..1180255- (Nannochloropsis oceanica)
CCGACCTCAAACACTGCCTCATTCCCCTTCCCTCCCTCCCACCACTACAC
CACAACAACATGCACCGCTTGCATGCTTGCCTCGCTGCTTGCTGCCTTCA
TCAACCACGACCACCAGGGGGACAACATGCTTCGGCGCTTCACGGCGAAG
GCTGGGGCCATGGTACGGAGAGGGAGCACGCTTCCCGGGCCAGGTGAGGT
GGCGTGTGTGATGCATTTAGGAAGAACTCGGGCTTGTTGATGGGGTGGGA
ATGCGCGTTCAGTGCACGCGACCGCAGTCTGGCCGAGGCATGTTGATCCC
CCCTTTGTCTGCGTGTCTGTGTCGTTTGCGTTGCAATCTTTGTTATGCGG
ACAAGGGCCCGCGTCAAGGTGTTCACGCACACGCACATCCATACACACCC
AACAGGAAAGGGACGCGTGCTGCGGGGGGGCTTCTCCTCGACAGCCCACA
CGGGGCCGGGCACGAGCAGTGGAGAGGAGCTCGGTAAGAAGTGGGCGACA
ATCTTCCAGGGCATTGGCGCGGTGCTAGGGGTTGCTGGTGCTACCGCTGT
GGTCGTGCGTACTTTCGACCAGACTGAGATCAGGCACATCGAGAGCAAGG
CGGCGGCGGAGATGGCGCGTGTGGAGGACAAGGCGGCGGCGGAGATCGTG
CGTGTGGAGGACAAGCGGACAATGTCGGAAGTGTTTTGGAAGGCGGAGGT
GGAGCGGTTCAAGCGCGAGGTCCAACTAGCTTACACTCAAGACTATGAGC
CTTATCAGGCCGCGCTTGTGGACAAACGTAAAAAGAGGGGAGGAACCGGC
GGATTGGAGGAGAAGGAAGAGGAGAATTAGGATTCGGGGCCCTACCTTAA
TATAAATAGAAATCATGTAGAAAGACACATTCAAAGACATGTACAGTGGA
CGGGGTTGTGCAGTAGAGAGATGGGCAGGAGGGGGATAGGACTCATACAC
GAGAAACGTAATAACGAGGGCTCCCCACAACTTGTATCGAGCGAGTTTTT
CCTTTGTCTTTTATGATTTGATGCACTGGCTCATATCCATCTCCCCCACA
CTAACGCCGCCGACCCTGCTTTCGACTTGTCCAACCAAGCCCCTGCCGCT
TGACGGCAGCAGACCGAGGCGACCCGTCGAAGGAAGGGGCAGACGCGGTG
GGAAGGAGGGAGGAAGTCATGGTATGAGTCAATGGATTGTAGCGGAAGCT
TTGGACCCCGGAAGAAAGGCACGGAGGGGCGTGCTAGAGGCGGTGTTGTG
TTGTTAATAGTGCCAGCACCAAGGCCTGTTTGCGTAATATACACACATAC
TACTTAGA
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Coding sequence (CDS) from alignment at scaffold_5:1178948..1180255-

>mRNA_2784 ID=mRNA_2784|Name=jgi.p|Nanoce1779_2|628755|organism=Nannochloropsis oceanica|type=CDS|length=1092bp|location=Sequence derived from alignment at scaffold_5:1178948..1180255- (Nannochloropsis oceanica)
GAAAGGGACGCGTGCTGCGGGGGGGCTTCTCCTCGACAGCCCACACGGGG
CCGGGCACGAGCAGTGGAGAGGAGCTCGGTAAGAAGTGGGCGACAATCTT
CCAGGGCATTGGCGCGGTGCTAGGGGTTGCTGGTGCTACCGCTGTGGTCG
TGCGTACTTTCGACCAGACTGAGATCAGGCACATCGAGAGCAAGGCGGCG
GCGGAGATGGCGCGTGTGGAGGACAAGGCGGCGGCGGAGATCGTGCGTGT
GGAGGACAAGCGGACAATGTCGGAAGTGTTTTGGAAGGCGGAGGTGGAGC
GGTTCAAGCGCGAGGTCCAACTAGCTTACACTCAAGACTATGAGCCTTAT
CAGGCCGCGCTTGTGGACAAACGTAAAAAGAGGGGAGGAACCGGCGGATT
GGAGGAGAAGGAAGAGGAGAATTAGATGCTTGCCTCGCTGCTTGCTGCCT
TCATCAACCACGACCACCAGGGGGACAACATGCTTCGGCGCTTCACGGCG
AAGGCTGGGGCCATGGTACGGAGAGGGAGCACGCTTCCCGGGCCAGGAAA
GGGACGCGTGCTGCGGGGGGGCTTCTCCTCGACAGCCCACACGGGGCCGG
GCACGAGCAGTGGAGAGGAGCTCGGTAAGAAGTGGGCGACAATCTTCCAG
GGCATTGGCGCGGTGCTAGGGGTTGCTGGTGCTACCGCTGTGGTCGTGCG
TACTTTCGACCAGACTGAGATCAGGCACATCGAGAGCAAGGCGGCGGCGG
AGATGGCGCGTGTGGAGGACAAGGCGGCGGCGGAGATCGTGCGTGTGGAG
GACAAGCGGACAATGTCGGAAGTGTTTTGGAAGGCGGAGGTGGAGCGGTT
CAAGCGCGAGGTCCAACTAGCTTACACTCAAGACTATGAGCCTTATCAGG
CCGCGCTTGTGGACAAACGTAAAAAGAGGGGAGGAACCGGCGGATTGGAG
GAGAAGGAAGAGGAGAATTAGATGCTTGCCTCGCTGCTTGCTGCCTTCAT
CAACCACGACCACCAGGGGGACAACATGCTTCGGCGCTTCACGGCGAAGG
CTGGGGCCATGGTACGGAGAGGGAGCACGCTTCCCGGGCCAG
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Synonyms
Publications