jgi.p|Nanoce1779_2|339300, mRNA_2781 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|339300
Unique NamemRNA_2781
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1009
Alignment locationscaffold_5:1173926..1175145 -

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Properties
Property NameValue
TranscriptId339386
TrackFilteredModels2
ProteinId339300
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:1173926..1175145 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|339300gene_2781Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|339300mRNA_2781-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2781CDS_2781Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2781 ID=mRNA_2781|Name=jgi.p|Nanoce1779_2|339300|organism=Nannochloropsis oceanica|type=mRNA|length=1009bp
CTTCCATGCATCATCATCATCAAGCAAGCCTCTTCTTGTCCCCCATCCCC
TTTTGGTCTTGCCCTTTGGCAAGCCAGGGGCACCCGCACCGCCACCAACC
TGTGGTCTAGCATGCGGAGGGGGAGGGTTTGACGCTGACGGCGTAACGAG
TTTGGTTCTGAAGAGCTTGTTAGTTGTATTTAGGGCGGCTTGGAAACCGA
CCTCAAACACTGCCTCATTCCCCTTCCCTCCCTCCCACCACTACACCACA
ACAATATGCACCGCTTGCATGCTTGCCTTGCTGCTTGCTGCCATCATCAA
CCACGACCACCAGGGGGACAACATGCTTCGGCGCTTCACGGCGAAGGCTG
GGGCCATGGCACGGAGTGGGAGCACGCTTCCCGGGCCAGGAAAGGGACGC
GTGCTGCGGGGGGGCTTCTCCTCGACAGTCCACACGGGGCCAGGCACGAG
CAGTGGAGAGGAGCTCGGTAAGAAGTGGGCGACAATCTTCCAGGGCATTG
GCGCGGTGCTAGGGGTTGCTGGTGCTACCGCTGTGGTCGTGCGTACTTTC
GACCAGACTGAGATGGCGACGGAGATAAAGTATGTCCAGAGCAAGGCGGC
GGCGGAGTTGAGGCACATCGAGAGCAAGGCGGCGGCGGAGATCGCGCAGG
CGAAAGCGGAGATCGCGCGTGTGGAAGACAAGCGGACAATGTCGGAAGTG
TTTTGGAAGGCGGAGGTGGAGCGGTTCAAGCGCGAGGTCCAACTGGCTTA
CACTCAAGACTATGAGCCTTATCAGGCCGCGCTTGTGGACAAACGTAAAA
AGAGGGGAGGAACCGGCGGATTGGAGGAGAAGGAAGAGGAGAATTAGGAT
TCGGGGCCCTACCTTAATATAAATAGAAACCATGTAGAAAGACACATTCA
AAGACATGTACAGTGGACGGGGTTGTGCAGTAGAGAGATGGGCAGGAGGG
GGATAGGACTCATACACGAGAAACGTAATAACGAGGGCTCCCCACAACTT
GTATCGAGC
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protein sequence of jgi.p|Nanoce1779_2|339300

>mRNA_2781-protein ID=mRNA_2781-protein|Name=jgi.p|Nanoce1779_2|339300|organism=Nannochloropsis oceanica|type=polypeptide|length=193bp
MLALLLAAIINHDHQGDNMLRRFTAKAGAMARSGSTLPGPGKGRVLRGGF
SSTVHTGPGTSSGEELGKKWATIFQGIGAVLGVAGATAVVVRTFDQTEMA
TEIKYVQSKAAAELRHIESKAAAEIAQAKAEIARVEDKRTMSEVFWKAEV
ERFKREVQLAYTQDYEPYQAALVDKRKKRGGTGGLEEKEEEN*
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mRNA from alignment at scaffold_5:1173926..1175145-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2781 ID=mRNA_2781|Name=jgi.p|Nanoce1779_2|339300|organism=Nannochloropsis oceanica|type=mRNA|length=1220bp|location=Sequence derived from alignment at scaffold_5:1173926..1175145- (Nannochloropsis oceanica)
CTTCCATGCATCATCATCATCAAGCAAGCCTCTTCTTGTCCCCCATCCCC
TTTTGGTCTTGCCCTTTGGCAAGCCAGGGGCACCCGCACCGCCACCAACC
TGTGGTCTAGCATGCGGAGGGGGAGGGTTTGACGCTGACGGCGTAACGAG
TTTGGTTCTGAAGAGCTTGTTAGTTGTATTTAGGGCGGCTTGGAAACCGA
CCTCAAACACTGCCTCATTCCCCTTCCCTCCCTCCCACCACTACACCACA
ACAATATGCACCGCTTGCATGCTTGCCTTGCTGCTTGCTGCCATCATCAA
CCACGACCACCAGGGGGACAACATGCTTCGGCGCTTCACGGCGAAGGCTG
GGGCCATGGCACGGAGTGGGAGCACGCTTCCCGGGCCAGGTGAGGTGGCG
TGTGTGATGCATTTAGGAAGAACTCGGGCTTGTTGATGGGGTGGGAGTGC
GCGTTCAGTGCACGCGACCGCAGTCTGGCCGAGGCATGTTGATTCCCCCT
TTGTCTGCGTGTCTGTGTCGTTTGCGTTGCAATCTTTGTTATGCGGAAAA
GGCCCGCATCAAGGTGTTCACGCACACGCACATCCATACACACCCAACAG
GAAAGGGACGCGTGCTGCGGGGGGGCTTCTCCTCGACAGTCCACACGGGG
CCAGGCACGAGCAGTGGAGAGGAGCTCGGTAAGAAGTGGGCGACAATCTT
CCAGGGCATTGGCGCGGTGCTAGGGGTTGCTGGTGCTACCGCTGTGGTCG
TGCGTACTTTCGACCAGACTGAGATGGCGACGGAGATAAAGTATGTCCAG
AGCAAGGCGGCGGCGGAGTTGAGGCACATCGAGAGCAAGGCGGCGGCGGA
GATCGCGCAGGCGAAAGCGGAGATCGCGCGTGTGGAAGACAAGCGGACAA
TGTCGGAAGTGTTTTGGAAGGCGGAGGTGGAGCGGTTCAAGCGCGAGGTC
CAACTGGCTTACACTCAAGACTATGAGCCTTATCAGGCCGCGCTTGTGGA
CAAACGTAAAAAGAGGGGAGGAACCGGCGGATTGGAGGAGAAGGAAGAGG
AGAATTAGGATTCGGGGCCCTACCTTAATATAAATAGAAACCATGTAGAA
AGACACATTCAAAGACATGTACAGTGGACGGGGTTGTGCAGTAGAGAGAT
GGGCAGGAGGGGGATAGGACTCATACACGAGAAACGTAATAACGAGGGCT
CCCCACAACTTGTATCGAGC
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Coding sequence (CDS) from alignment at scaffold_5:1173926..1175145-

>mRNA_2781 ID=mRNA_2781|Name=jgi.p|Nanoce1779_2|339300|organism=Nannochloropsis oceanica|type=CDS|length=1158bp|location=Sequence derived from alignment at scaffold_5:1173926..1175145- (Nannochloropsis oceanica)
GAAAGGGACGCGTGCTGCGGGGGGGCTTCTCCTCGACAGTCCACACGGGG
CCAGGCACGAGCAGTGGAGAGGAGCTCGGTAAGAAGTGGGCGACAATCTT
CCAGGGCATTGGCGCGGTGCTAGGGGTTGCTGGTGCTACCGCTGTGGTCG
TGCGTACTTTCGACCAGACTGAGATGGCGACGGAGATAAAGTATGTCCAG
AGCAAGGCGGCGGCGGAGTTGAGGCACATCGAGAGCAAGGCGGCGGCGGA
GATCGCGCAGGCGAAAGCGGAGATCGCGCGTGTGGAAGACAAGCGGACAA
TGTCGGAAGTGTTTTGGAAGGCGGAGGTGGAGCGGTTCAAGCGCGAGGTC
CAACTGGCTTACACTCAAGACTATGAGCCTTATCAGGCCGCGCTTGTGGA
CAAACGTAAAAAGAGGGGAGGAACCGGCGGATTGGAGGAGAAGGAAGAGG
AGAATTAGATGCTTGCCTTGCTGCTTGCTGCCATCATCAACCACGACCAC
CAGGGGGACAACATGCTTCGGCGCTTCACGGCGAAGGCTGGGGCCATGGC
ACGGAGTGGGAGCACGCTTCCCGGGCCAGGAAAGGGACGCGTGCTGCGGG
GGGGCTTCTCCTCGACAGTCCACACGGGGCCAGGCACGAGCAGTGGAGAG
GAGCTCGGTAAGAAGTGGGCGACAATCTTCCAGGGCATTGGCGCGGTGCT
AGGGGTTGCTGGTGCTACCGCTGTGGTCGTGCGTACTTTCGACCAGACTG
AGATGGCGACGGAGATAAAGTATGTCCAGAGCAAGGCGGCGGCGGAGTTG
AGGCACATCGAGAGCAAGGCGGCGGCGGAGATCGCGCAGGCGAAAGCGGA
GATCGCGCGTGTGGAAGACAAGCGGACAATGTCGGAAGTGTTTTGGAAGG
CGGAGGTGGAGCGGTTCAAGCGCGAGGTCCAACTGGCTTACACTCAAGAC
TATGAGCCTTATCAGGCCGCGCTTGTGGACAAACGTAAAAAGAGGGGAGG
AACCGGCGGATTGGAGGAGAAGGAAGAGGAGAATTAGATGCTTGCCTTGC
TGCTTGCTGCCATCATCAACCACGACCACCAGGGGGACAACATGCTTCGG
CGCTTCACGGCGAAGGCTGGGGCCATGGCACGGAGTGGGAGCACGCTTCC
CGGGCCAG
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Synonyms
Publications