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Properties
| Property Name | Value |
|---|
| TranscriptId | 576875 |
| Track | FilteredModels2 |
| ProteinId | 576789 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_3 | supercontig | scaffold_3:687351..688706 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_278 ID=mRNA_278|Name=jgi.p|Nanoce1779_2|576789|organism=Nannochloropsis oceanica|type=mRNA|length=1356bp
ACAGGCCTTACCAAGCCCTCCTCCACAAGAATGAAGTTGTTCGCAGCCGT
CTTCGTGCTGGTGGCCGCCATCAGCACCATTTTGACAGTTAATGCCTTTG
TCCCCCACCCGCCCCCCTCGCCCTTCATAGCTGGTAGTAGCACCAGCACG
ATGGGCAGGACAAGGCGCTCGGCTGCCACTCTTGTCGCCCCGACGTCGTC
CATCAAGTCGAGTGTGCAAGACACCTTGAAGCAGGCGTTTCCATCAGTCC
AAATTCCTGCAGAGTTCTTGTCCGCCGTCAGCTCCCCCGGGATGGGCACG
GACTTGGAGCGAGCATTAATTCGCGGCAAGGCATTTGCGGCCATGGCGCC
GCGCGTGTTGATTACCAGGGGCTGGGACGTGTTGTCCGACGATTTTGTGT
ACTACAGTAGCGCAACGGGCAAGTTGGACCGTGCGGGATTTCTTGGCTTG
GTGTGCATCATGGAACGGGCTTTGCCGGACTTGCAGCAATCTGCCTCTAA
GTTTGAGGTGACGAGCGACGGGGCAGTGATGTACGTCTCGGAAGCTGTAG
GCACTTTTACAGGTCAGCTTATCATCAGCGAGACAATGCAAGAAGGCAAT
GGACTCAAGTACCAGGGGTTAAGGGAGGCGTGCGTCGTGGCATTTAATGA
CGATGGGCAACTGCAGAGTTTGAGCGCAGGATTGGTAGTGGAGGAGGAAA
GCGACGGCAAGGATGAGAGCGTGGCGGAGGCAGCGCAAGTGGAGTTGATG
AAACGGTTGGCCTCGCATGTGCAAAAGTTGGAGATGACGCCGACGGGCAA
GTCGGCCCGGGAAAAAATTCAACAAGACATCGATAGCACTCAGGCAAAGA
TTGACGCGTATGAAAAGGCGGGGGAGACGGTGAAGGTGGGAACAGGGGCA
GGGCTTGGAGGACTTTTGCAGGCGCTGGGAGTCGATGTGCCGAAAGCGGA
GATTTTGAGCGACGTGTTGGTGTCGCATGCATCGGAGCCATTGCTGGTGA
TGGAGGCGAGCGATCTGATCACAGTCCCGACGGAGTGTGATGCATTGATG
GATAACATTAATCCAATGACTACAGTCTGGTAAGGAAAGAACAGAGGGAG
GGGTATAGGAACGGGTAGGCGATGTAAGAAGGAAGAATGAACGAATATCC
CAGAAGGGAAGGGGAAAGGGGGGATGGGATGGATCTGAAGGAGAGGCAAG
TACAGTAAAGCCATCGGTAGGGCACCGATTTTGGAGGGTAGGGAGAGTAG
GCATTCATTACCAGCAACAGCTACAGCAGCTACAGCAGCAACAGCGCTAA
CAAAAAAGAAAAGGGGAAGGCCAACCACAAGCAAAGAAGCTCACAAACAG
ACGCAA back to topprotein sequence of jgi.p|Nanoce1779_2|576789 >mRNA_278-protein ID=mRNA_278-protein|Name=jgi.p|Nanoce1779_2|576789|organism=Nannochloropsis oceanica|type=polypeptide|length=351bp
MKLFAAVFVLVAAISTILTVNAFVPHPPPSPFIAGSSTSTMGRTRRSAAT
LVAPTSSIKSSVQDTLKQAFPSVQIPAEFLSAVSSPGMGTDLERALIRGK
AFAAMAPRVLITRGWDVLSDDFVYYSSATGKLDRAGFLGLVCIMERALPD
LQQSASKFEVTSDGAVMYVSEAVGTFTGQLIISETMQEGNGLKYQGLREA
CVVAFNDDGQLQSLSAGLVVEEESDGKDESVAEAAQVELMKRLASHVQKL
EMTPTGKSAREKIQQDIDSTQAKIDAYEKAGETVKVGTGAGLGGLLQALG
VDVPKAEILSDVLVSHASEPLLVMEASDLITVPTECDALMDNINPMTTVW
* back to topmRNA from alignment at scaffold_3:687351..688706- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_278 ID=mRNA_278|Name=jgi.p|Nanoce1779_2|576789|organism=Nannochloropsis oceanica|type=mRNA|length=1356bp|location=Sequence derived from alignment at scaffold_3:687351..688706- (Nannochloropsis oceanica)
ACAGGCCTTACCAAGCCCTCCTCCACAAGAATGAAGTTGTTCGCAGCCGT
CTTCGTGCTGGTGGCCGCCATCAGCACCATTTTGACAGTTAATGCCTTTG
TCCCCCACCCGCCCCCCTCGCCCTTCATAGCTGGTAGTAGCACCAGCACG
ATGGGCAGGACAAGGCGCTCGGCTGCCACTCTTGTCGCCCCGACGTCGTC
CATCAAGTCGAGTGTGCAAGACACCTTGAAGCAGGCGTTTCCATCAGTCC
AAATTCCTGCAGAGTTCTTGTCCGCCGTCAGCTCCCCCGGGATGGGCACG
GACTTGGAGCGAGCATTAATTCGCGGCAAGGCATTTGCGGCCATGGCGCC
GCGCGTGTTGATTACCAGGGGCTGGGACGTGTTGTCCGACGATTTTGTGT
ACTACAGTAGCGCAACGGGCAAGTTGGACCGTGCGGGATTTCTTGGCTTG
GTGTGCATCATGGAACGGGCTTTGCCGGACTTGCAGCAATCTGCCTCTAA
GTTTGAGGTGACGAGCGACGGGGCAGTGATGTACGTCTCGGAAGCTGTAG
GCACTTTTACAGGTCAGCTTATCATCAGCGAGACAATGCAAGAAGGCAAT
GGACTCAAGTACCAGGGGTTAAGGGAGGCGTGCGTCGTGGCATTTAATGA
CGATGGGCAACTGCAGAGTTTGAGCGCAGGATTGGTAGTGGAGGAGGAAA
GCGACGGCAAGGATGAGAGCGTGGCGGAGGCAGCGCAAGTGGAGTTGATG
AAACGGTTGGCCTCGCATGTGCAAAAGTTGGAGATGACGCCGACGGGCAA
GTCGGCCCGGGAAAAAATTCAACAAGACATCGATAGCACTCAGGCAAAGA
TTGACGCGTATGAAAAGGCGGGGGAGACGGTGAAGGTGGGAACAGGGGCA
GGGCTTGGAGGACTTTTGCAGGCGCTGGGAGTCGATGTGCCGAAAGCGGA
GATTTTGAGCGACGTGTTGGTGTCGCATGCATCGGAGCCATTGCTGGTGA
TGGAGGCGAGCGATCTGATCACAGTCCCGACGGAGTGTGATGCATTGATG
GATAACATTAATCCAATGACTACAGTCTGGTAAGGAAAGAACAGAGGGAG
GGGTATAGGAACGGGTAGGCGATGTAAGAAGGAAGAATGAACGAATATCC
CAGAAGGGAAGGGGAAAGGGGGGATGGGATGGATCTGAAGGAGAGGCAAG
TACAGTAAAGCCATCGGTAGGGCACCGATTTTGGAGGGTAGGGAGAGTAG
GCATTCATTACCAGCAACAGCTACAGCAGCTACAGCAGCAACAGCGCTAA
CAAAAAAGAAAAGGGGAAGGCCAACCACAAGCAAAGAAGCTCACAAACAG
ACGCAA back to topCoding sequence (CDS) from alignment at scaffold_3:687351..688706- >mRNA_278 ID=mRNA_278|Name=jgi.p|Nanoce1779_2|576789|organism=Nannochloropsis oceanica|type=CDS|length=1053bp|location=Sequence derived from alignment at scaffold_3:687351..688706- (Nannochloropsis oceanica)
ATGAAGTTGTTCGCAGCCGTCTTCGTGCTGGTGGCCGCCATCAGCACCAT
TTTGACAGTTAATGCCTTTGTCCCCCACCCGCCCCCCTCGCCCTTCATAG
CTGGTAGTAGCACCAGCACGATGGGCAGGACAAGGCGCTCGGCTGCCACT
CTTGTCGCCCCGACGTCGTCCATCAAGTCGAGTGTGCAAGACACCTTGAA
GCAGGCGTTTCCATCAGTCCAAATTCCTGCAGAGTTCTTGTCCGCCGTCA
GCTCCCCCGGGATGGGCACGGACTTGGAGCGAGCATTAATTCGCGGCAAG
GCATTTGCGGCCATGGCGCCGCGCGTGTTGATTACCAGGGGCTGGGACGT
GTTGTCCGACGATTTTGTGTACTACAGTAGCGCAACGGGCAAGTTGGACC
GTGCGGGATTTCTTGGCTTGGTGTGCATCATGGAACGGGCTTTGCCGGAC
TTGCAGCAATCTGCCTCTAAGTTTGAGGTGACGAGCGACGGGGCAGTGAT
GTACGTCTCGGAAGCTGTAGGCACTTTTACAGGTCAGCTTATCATCAGCG
AGACAATGCAAGAAGGCAATGGACTCAAGTACCAGGGGTTAAGGGAGGCG
TGCGTCGTGGCATTTAATGACGATGGGCAACTGCAGAGTTTGAGCGCAGG
ATTGGTAGTGGAGGAGGAAAGCGACGGCAAGGATGAGAGCGTGGCGGAGG
CAGCGCAAGTGGAGTTGATGAAACGGTTGGCCTCGCATGTGCAAAAGTTG
GAGATGACGCCGACGGGCAAGTCGGCCCGGGAAAAAATTCAACAAGACAT
CGATAGCACTCAGGCAAAGATTGACGCGTATGAAAAGGCGGGGGAGACGG
TGAAGGTGGGAACAGGGGCAGGGCTTGGAGGACTTTTGCAGGCGCTGGGA
GTCGATGTGCCGAAAGCGGAGATTTTGAGCGACGTGTTGGTGTCGCATGC
ATCGGAGCCATTGCTGGTGATGGAGGCGAGCGATCTGATCACAGTCCCGA
CGGAGTGTGATGCATTGATGGATAACATTAATCCAATGACTACAGTCTGG
TAA back to top
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