jgi.p|Nanoce1779_2|339476, mRNA_2779 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|339476
Unique NamemRNA_2779
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length877
Alignment locationscaffold_5:1166277..1169591 -

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Properties
Property NameValue
TranscriptId339562
TrackFilteredModels2
ProteinId339476
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:1166277..1169591 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|339476gene_2779Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|339476mRNA_2779-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2779CDS_2779Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2779 ID=mRNA_2779|Name=jgi.p|Nanoce1779_2|339476|organism=Nannochloropsis oceanica|type=mRNA|length=877bp
ACGGCGAAGGCTGGGGCCATGGCACGGAGAGGGAGCACGCTTCCCGGGCC
AGGTGAGGTGGCGTGTGTGATGCATTTAGGAAGAACTCGGGCTTGTTGAT
GGGGTGGGAATGCGCGTTCAGTGCACGCGACCGCAGTCTGGCCGAGGCAT
GTTGATTCCCCCCTTTGTCTGCGTGTCTGTGTCGTTTGCGTTGCAATCTT
TGTTATGCGGACAAGGGCCCGCGTCAAGGTGTTCACGCACACGCACATCC
ATACACACCCAACAGGAAAGGGACGCGTGCTGCGGGGGGGGTTCTCCTCG
ACAGTCCACACGGGGCCAGGCACGAGCAGTGGAGAGGAGCTCGGTAAGAA
GTGGGCGACAATCTTCCAAGGAATTGGCGCGGTGCTAGGGGTTGCTGGTG
CTACCGCTGTGGTCGTGCGTACTTTCGACCAGACTGAGATGGCGACGGAG
ATAAAGTATGTCCAGAGCAAGGCGGCGGCGGAGATCGCGCAGGCGAAAGC
GGAGGTCGCGCGTGTGGAGGACAAGGCGGCGGCGGAGATCGCGCAGGCGA
AAGCGGAGATCGCGCGTGTGGAGGACAAGGCGGCGGCGGAGATCGCGCGT
GTGGAAGACAAGCGGACAATGTCCGAAGTGTTTTGGAAGGCGGAGGTGGA
GCGGTTCAAGCGCGAGGTCCAACTGGCTTACACTCAAGACTATGAGCCTT
ACCAGGCCGCGCTTGTGGACAAACGTAAAAAGAGGGGAGGAACCGGCGGA
TCGGAGGAGAAGGAAGAGGAGAATTAGGATTCGGGGCCCTACCTTAATAT
AAATAGAAACCATGTAGAAAGACACATTCAAAGACATGTACAGTGGACGG
GGTTGTGCAGTAGAGAGATGGGCAGGA
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protein sequence of jgi.p|Nanoce1779_2|339476

>mRNA_2779-protein ID=mRNA_2779-protein|Name=jgi.p|Nanoce1779_2|339476|organism=Nannochloropsis oceanica|type=polypeptide|length=191bp
MRTRARVKVFTHTHIHTHPTGKGRVLRGGFSSTVHTGPGTSSGEELGKKW
ATIFQGIGAVLGVAGATAVVVRTFDQTEMATEIKYVQSKAAAEIAQAKAE
VARVEDKAAAEIAQAKAEIARVEDKAAAEIARVEDKRTMSEVFWKAEVER
FKREVQLAYTQDYEPYQAALVDKRKKRGGTGGSEEKEEEN*
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mRNA from alignment at scaffold_5:1166277..1169591-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2779 ID=mRNA_2779|Name=jgi.p|Nanoce1779_2|339476|organism=Nannochloropsis oceanica|type=mRNA|length=3315bp|location=Sequence derived from alignment at scaffold_5:1166277..1169591- (Nannochloropsis oceanica)
ACGGCGAAGGCTGGGGCCATGGCACGGAGAGGGAGCACGCTTCCCGGGCC
AGGTGAGGTGGCGTGTGTGATGCATTTAGGAAGAACTCGGGCTTGTTGAT
GGGGTGGGAATGCGCGTTCAGTGCACGCGACCGCAGTCTGGCCGAGGCAT
GTTGATTCCCCCCTTTGTCTGCGTGTCTGTGTCGTTTGCGTTGCAATCTT
TGTTATGCGGACAAGGGCCCGCGTCAAGGTGTTCACGCACACGCACATCC
ATACACACCCAACAGGAAAGGGACGCGTGCTGCGGGGGGGGTTCTCCTCG
ACAGTCCACACGGGGCCAGGCACGAGCAGTGGAGAGGAGCTCGGTAAGAA
GTGGGCGACAATCTTCCAAGGAATTGGCGCGGTGCTAGGGGTTGCTGGTG
CTACCGCTGTGGTCGTGCGTACTTTCGACCAGACTGAGATGGCGACGGAG
ATAAAGTATGTCCAGAGCAAGGCGGCGGCGGAGATCGCGCAGGCGAAAGC
GGAGATCGCGCAGGCGAAAGCGGAGATCGCGCGTGTGGAGGACAAGGCGG
CGGCGGAGATCGCGCGTGTGGAAGACAAGCGGACAATGTCGGAAGTGTTT
TGGAAGGCGGAGGTGGAGCGGTTCAAGCGCGAGGTCCAACTAGCTTACAC
TCAAGACTATGAGCCTTACCAGGCCGCGCTTGTGGACAAACGTAAAAAGA
GGGGAGGAACCGGCGGATCGGAGGAGAAGGAAGAGGAGAATTAGGATTCG
GGGCCCTACCTTAATATAAATAGAAATCATGTAGAAAGACACATTCAAAG
ACATGTACAGTGGACGGGGTTGTGCAGTAGAGAGATGGGCAGGAGGGGGA
TAGGACTCATACACGAGAAACGTAATAACGAGGGCTCCCCACAACTTGTA
TCGAGCGAGTTTTTCCTTTGTCTTTTATGATTTGATGCACTGGCTCATAT
CCATCTCCCCCACACTAACGCCGCCGACCCTGCTTTCGACTTGTCCAACC
AAGCCCCTGCCGCTTGACGGCAGCAGACCGAGGCGACCCGTCGAAGGAAG
GGGCAGACGCGGTGGGAAGGAGGGAGGAAGTCATGGTATGAGTCAATGGA
TTGTAGCGGAAGCTTTGGACCCCGGAAGAAAGGCACGGAGGGGCGTGCTA
GAGGCGGTGTGGTGTTGTTAATAGTGCCAGCACCAAGGCCTGTTTGCGTA
ATATACACACATACTACTTAGAAAGGCGGCACGTAAGGAGGCTCAACAAG
CTTTGTGGACCCCCGCCCAGCAGCCAGCAGCCAGTCTAGCATGTCTCTCC
CTAGGCCCAGTCTTGTGCGCAGCACCACACTCAATACCAGCCACCACCAC
CCCATCCGTAGAGGTGTGTCACGTCGCACCCTCTACATGGTCCTGGCGTC
TGTGGCTGGCGTCTGTGTGGTGGGTGTGCTCTGTGTGTGCCTTCCATGCA
TCATCATCATCATCAAGCAAGCCTCTTCTTGTCCCCCATCCCCTTTTGGT
CTTGCCCTTTGGCAAGCCAGGGGCACCCGCACCGCCACCAACCTGTGGTC
TAGGATGCGGAGGGGGAGGGTTTGACGCTGACGGCGTAACGAGTTTGGTT
CTGAAGAGCTTGTTAGTTGTATTTAGGGCGGCTTGGAAACCGACCTCAAA
CACTGCCTCATTCCCCTTCCCTCCCTCCCACCACTACACCACAACAACAT
GCACCGCTTGCATGCTTGCCTCGCTGCTTGCTGCCATCATCAACCACGAC
CACCAGGGGGACAACATGCTTCGGCGCTTCACGGCGAAGGCTGGGGCCAT
GGCACGGAGAGGGAGCACGCTTCCCGGGCCAGGTGAGGTGGCGTGTGTGA
TGCATTTAGGAAGAACTCGGGCTTGTTGATGGGGTGGGAGTGCGCGTTCA
GTGCACGCGACCGCAGTCTGGCCGAGGCATGTTGATTCCCCCTTTGTCTG
CGTGTCTGTGTCGTTTGCGTTGCAATCTTTGTTATGCGGACAAGGGCCCG
CATCAAGGTGTTCACGCACACGCACATCCATACACACCCAACAGGAAAGG
GACGCGTGCTGCGGGGGGGCTTCTCCTCGACAGTCCACACGGGGCCAGGC
ACGAGCAGTGGAGAGGAGCTCGGTAAGAAGTGGGCGACAATCTTCCAAGG
CATTGGCGCGGTGCTAGGGGTTGCTGGTGCTACCGCTGACAAGGCCCTTG
TGTTGTGAGACAATTGGCGGTCGACGTGGGAGCATATTAAGAGACGGTCA
TGCGTGCTTACCACAACTTGCAAATGCCTCTAAGTGCATAGGCCTGACAC
CCCCTCAAGAATGTGAGTAAATATGGTAAAAAAAGAATACTGATAGACAC
AACGTATATAGCTGTTCAAATAAAGCGCGGAGCGCGTAGCAACAACAATA
CACATAATCCGTACGGACTATACAGAAAGATATTTAAGTTTTTTTATTGT
TTTTATTTTTTAGGGGTTTATTCGCCTCTAGGCGCTTTGCCGCCGGCATG
ATGACATCTACTTCTATCATATTTTGAGCACCAAAATAAGCCCGCCCCGC
ATGACGGGGTAGCTGCCGGCATCAGTCCCACTAGTTGGCGCGGGATGACC
GGCAGCCAAAGGAGCGGCTTGTTTAGAGCGGGATGGCGTCATCGTCCCGC
GAAAACGCCAGTGGCCTGATGCCGGCAGCTACCCCGTCATGCGGGGCGGG
CTTATTTTGGTGCTCAAAATATGATAGAAGTAGATGTCATCATGCCGGCG
GCAAAGCGCCTAGAGGCGAATAAACCCCTAAAAAATAAAAACAATAAAAA
AACTTAAATATCTTTCTGTGTAGTCCGTGTCGTGCGTACTTTCGACCAGA
CTGAGATGGCGACAGAGATAAAGTATGTCCAGAGCAAGGCGGCGGCGGAG
ATCGCGCAGGCGAAAGCGGAGATCGCGCAGGCGAAAGCCGACGTCGCGCG
TGTGGAGGACAAGGCGGCGGCGGAGATCGCGCAGGCGAAAGCGGAGATCG
CGCGTGTGGAGGACAAGGCGGCGGCGGAGATCGCGCGTGTGGAAGACAAG
CGGACAATGTCCGAAGTGTTTTGGAAGGCGGAGGTGGAGCGGTTCAAGCG
CGAGGTCCAACTGGCTTACACTCAAGACTATGAGCCTTACCAGGCCGCGC
TTGTGGACAAACGTAAAAAGAGGGGAGGAACCGGCGGATCGGAGGAGAAG
GAAGAGGAGAATTAGGATTCGGGGCCCTACCTTAATATAAATAGAAACCA
TGTAGAAAGACACATTCAAAGACATGTACAGTGGACGGGGTTGTGCAGTA
GAGAGATGGGCAGGA
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Coding sequence (CDS) from alignment at scaffold_5:1166277..1169591-

>mRNA_2779 ID=mRNA_2779|Name=jgi.p|Nanoce1779_2|339476|organism=Nannochloropsis oceanica|type=CDS|length=1146bp|location=Sequence derived from alignment at scaffold_5:1166277..1169591- (Nannochloropsis oceanica)
GTCGCGCGTGTGGAGGACAAGGCGGCGGCGGAGATCGCGCAGGCGAAAGC
GGAGATCGCGCGTGTGGAGGACAAGGCGGCGGCGGAGATCGCGCGTGTGG
AAGACAAGCGGACAATGTCCGAAGTGTTTTGGAAGGCGGAGGTGGAGCGG
TTCAAGCGCGAGGTCCAACTGGCTTACACTCAAGACTATGAGCCTTACCA
GGCCGCGCTTGTGGACAAACGTAAAAAGAGGGGAGGAACCGGCGGATCGG
AGGAGAAGGAAGAGGAGAATTAGATGCGGACAAGGGCCCGCGTCAAGGTG
TTCACGCACACGCACATCCATACACACCCAACAGGAAAGGGACGCGTGCT
GCGGGGGGGGTTCTCCTCGACAGTCCACACGGGGCCAGGCACGAGCAGTG
GAGAGGAGCTCGGTAAGAAGTGGGCGACAATCTTCCAAGGAATTGGCGCG
GTGCTAGGGGTTGCTGGTGCTACCGCTGTGGTCGTGCGTACTTTCGACCA
GACTGAGATGGCGACGGAGATAAAGTATGTCCAGAGCAAGGCGGCGGCGG
AGATCGCGCAGGCGAAAGCGGAGGTCGCGCGTGTGGAGGACAAGGCGGCG
GCGGAGATCGCGCAGGCGAAAGCGGAGATCGCGCGTGTGGAGGACAAGGC
GGCGGCGGAGATCGCGCGTGTGGAAGACAAGCGGACAATGTCCGAAGTGT
TTTGGAAGGCGGAGGTGGAGCGGTTCAAGCGCGAGGTCCAACTGGCTTAC
ACTCAAGACTATGAGCCTTACCAGGCCGCGCTTGTGGACAAACGTAAAAA
GAGGGGAGGAACCGGCGGATCGGAGGAGAAGGAAGAGGAGAATTAGATGC
GGACAAGGGCCCGCGTCAAGGTGTTCACGCACACGCACATCCATACACAC
CCAACAGGAAAGGGACGCGTGCTGCGGGGGGGGTTCTCCTCGACAGTCCA
CACGGGGCCAGGCACGAGCAGTGGAGAGGAGCTCGGTAAGAAGTGGGCGA
CAATCTTCCAAGGAATTGGCGCGGTGCTAGGGGTTGCTGGTGCTACCGCT
GTGGTCGTGCGTACTTTCGACCAGACTGAGATGGCGACGGAGATAAAGTA
TGTCCAGAGCAAGGCGGCGGCGGAGATCGCGCAGGCGAAAGCGGAG
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Synonyms
Publications