jgi.p|Nanoce1779_2|628747, mRNA_2777 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|628747
Unique Name	mRNA_2777
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	3232
Alignment location	scaffold_5:1162167..1165580 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	628833
Track	FilteredModels2
ProteinId	628747

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_5	supercontig	scaffold_5:1162167..1165580 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|628747	gene_2777	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|628747	mRNA_2777-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2777	CDS_2777	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_5:1162167..1165580+
coding sequence from alignment at scaffold_5:1162167..1165580+

mRNA sequence

>mRNA_2777 ID=mRNA_2777|Name=jgi.p|Nanoce1779_2|628747|organism=Nannochloropsis oceanica|type=mRNA|length=3232bp
AGCAACAAGAAGATTTGGAAGGAGTAAGGGTTACTTGCAAAGAAGAATGA
GGAAAAGGAGAAAGCAAAATGTACGAGGGGGTGGTACTGGCAGCAAGAAC
CTGCAAACGATTGAGGAATGCTCGATAAGATCCAAACGTGTCTACTTAGA
ATCGACGTCGAGTCCCACAGCAAAGCCCCTCCGCAAGATCTGCTTGCGGT
TGGCTTCCCCTGAACCAGCTCGCCCCAGCGGACAATTAACTGGTAAGCAC
TGACCATCAGAAGCACCACTCCCACGAGCAGCAGAGCATCACCTACTCCA
CTTTCTCTGGCGTCGCACAGGGGGGGAAAAAAACGGAAAAAACGGTCAAC
AATACAAAAAGACAAAAACCCGTACGCAGAGGTGAGTCTTCCTCTCTCCC
TTTGCTCTCCCGCGTTGCCACCCATATGTATGGGCACGTGCGGTTGACGT
CAAGTGTAAGTTTGTTCGCACAGTAGCTACTATGGTTAACCATTGGTGCG
CGGCAGAGGCGACGTTAGGGGCCCATGTGGCGGCTGCGCTTCCCTCTCAC
AGTGAGGCGAGCTGTTTTTGAGTGTCGGTTGTCTGTTTGCTCTGCACCCT
TATCTTTAATAACCCGTGCTCCTTTTGTCGTCATGCCTCCGAATCACCGT
GCGCTACACATACCTGACCCGTGTGCCTGAAAGAGAGCGAAGCTTAGACT
GCCCCCTTTACCTCTGACCACCACCAGGCAGAAGAGATGGCATTTACGCC
CCTCTTCACGTCTTCACCAAAAACACCCATATGATCATCGTCCAAGCACA
CACCAAATAATCAAGAGTAGTCATCCATTACGCACGCTACCCTCCCCGAA
CCAACTCACCTGGTCCCCAGCTGGCATTGTCTTCGCTGGGTTCCCGCCGC
GAGAGGATATCCATGGCATCTAGGCGAAACGACCACCCGCGTGCTCAAAT
ATTGATAACGGTTTATCGGAAAGCGCCCCTTTAGATTCCATAATTTTTGT
CGCACACACTCAGCCTCGCACTCCCCCTTCTCCTTCCTGCTTCTCCCTCC
CTTCTACGATCCTTCTGTCCTCCACCCTCTTTCCTCCCCCCATCCTCCCT
GCTTCCGCCCATCCTCCCTTCCTCTTCCTCTCTTCCTATTTCAATCCTTT
CTTTTTATATTCACCTTCTTCCTCTGATTCGCCTTCCTCACAAAGCACTC
CTCCTTTTGCTCTCCTTTCTCCTCCAGTGAATCATTCCTCCACGCCTTAT
CGCTCGTTCCCCATCTTCCTGCCCCTCATTTTACCTGTCCCTTTCTCGAT
CCATCTTCTCTCATTTACTAATCTCCCCTTCTCTACATGCCTTCATTGCC
ATTTATCCTCCTGCCACACTAGTCCTCTTCTTCTCCTCCTCTCTTCTTAG
CTTTTATCCGCCATGTCATCACTCTTCTACAACCTCACTTCTTGCCCTCT
CCTCCGCTACTCTCGACTCGATTGATCTGATCTGATCAATGTCCGGCGTC
AGACATCGCAAGCTTTCTCCAACCTCAATCAAAGTACTCATTAACTTTCA
ATCCACAGATTGCAGGATTGCGCGTGCTATACCATGCGCCGCGCTCGTTC
TCTGTTTGCCCTTGGGATCACCTTCGCCCTTGCAGCGGCTGAGCCAATTG
AGCCGACGTTGATCCTCACCTCCATCAAGGCAATCGACGTGGACAGGGCG
AACAAGGACAAGTGGAGTGTCAAGGGCTACATCAACGACCCTGACGGCGA
TTTCGTCCCGGCCATTGGTGGACTTGGCTTGTCCACGACGCTCGTTAACG
GGGCCACCGACATAGTGAATGACTTGACCTTCGATGCGAATGATTGTAAT
GAACTTAAAAACGATGAGGGAGTCATTTGCAAGACTACGGGCACCCGTGT
CTCGATTAAGAGGACCAACAGGGTGCCCAAGGATGCTACGATCGAGGCAC
AGAGGAACCGCAACACGACCAGTGCATCTTCGTATTACAGGTTTACAGGT
GTTTTCCGCCGTCAGGAATTCGACAGCACCCTAGCGTCGCCTCTGACAGC
TGTCTTCGGTATCGATGGCTCTGGTCCCTCGCCTTCTTCATCACTTGCGT
AGATAAGGTCACAAAATGAGTGAGCGTCCACTCGGCGTCCGAGTCTGGCA
GAAGATGTTATACGTTATTTCTCTTAAATGTCCTATGTGTGTCATATTCT
GTCATGTTCTGTATACCCGCTTACAGCCTAGAAGCCCCAGATGCCTTTCC
TAGGGCGTCGATTTCTCTAAGTGCGTGGTAATAATTTTTTGTTCTGTGCA
CGCACGTGTGTATGAGTGCATTTTGTTGCTCAAATACTACTTGTGTTTTG
TGCTCGTATTCCTAGACGTCTATGGGGGGGTATATTACGAGGGGTAGGAT
AAAGTTCCTCCGTTCCGATCCTTCCAACAACCTACCATAGTCAAGGACCA
AAGCTACTTCCAAGGAATGTAATTTTTTCTTTTTCCACGGTATTTATGCA
TCGTTCTTCGGCGTCCTCTTCGGTTTCTTCCGGACTTCATTCGATCTCTT
CTGTTTCATCTTAACTTTATACGAGCCCGACATTCTTTTTGTACAGGATT
TCTTCCTGTGTCTTTCATCCTCGCACATGCGCACAGGCCAAAAATCAAAA
CTCAATTATCACGTCATTCCGTCCCTTTAAAAATGTTGGAGAATACCCTG
GCCGTGTATCCAGCAAGCTCAAACCAATTCAGTCATGTCTGCAATCCCCC
CACATTGCTACACCAAGCTTCACGACACCACCGTGCTATGTCGACGAGTG
GAAGAGAGCTACTACCATTCTCGTAAATTCATTTATATATCTTGAGTACC
AAAAGAAGCCCGCCCCGGGTAACGAAAGTACCAGCATAGGGTCAGTGGCG
TTCTCAGTTTTGGCGCGAAGGTTCTCGTGAAACTTATTCGGAAAAATCAC
GCGACTTTATGTGTGATGTTTCTCGAATGTTATCATCGCGCTCAAAACAA
ATGTGATGTTTCTCGATCACTTAGCGGATCATGGCACTAAAGAAGCCGCG
TTCATAAAACGCGGATAAATCCCACCATCACGACGAATGAAGCCTGGAAA
AGTACCTCGCGACTCGAGGGGGCAGGCATAACATGCACATATTGTGATAG
AGAGTAATATCGCCATCTGGGTAGGAAAATTGAATTATTTCATATTTAAT
GGAAATTAGAAAAAAATAAAAATTGAAACGAA

protein sequence of jgi.p|Nanoce1779_2|628747

>mRNA_2777-protein ID=mRNA_2777-protein|Name=jgi.p|Nanoce1779_2|628747|organism=Nannochloropsis oceanica|type=polypeptide|length=173bp
MRRARSLFALGITFALAAAEPIEPTLILTSIKAIDVDRANKDKWSVKGYI
NDPDGDFVPAIGGLGLSTTLVNGATDIVNDLTFDANDCNELKNDEGVICK
TTGTRVSIKRTNRVPKDATIEAQRNRNTTSASSYYRFTGVFRRQEFDSTL
ASPLTAVFGIDGSGPSPSSSLA*

mRNA from alignment at scaffold_5:1162167..1165580+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2777 ID=mRNA_2777|Name=jgi.p|Nanoce1779_2|628747|organism=Nannochloropsis oceanica|type=mRNA|length=3414bp|location=Sequence derived from alignment at scaffold_5:1162167..1165580+ (Nannochloropsis oceanica)
AGCAACAAGAAGATTTGGAAGGAGTAAGGGTTACTTGCAAAGAAGAATGA
GGAAAAGGAGAAAGCAAAATGTACGAGGGGGTGGTACTGGCAGCAAGAAC
CTGCAAACGATTGAGGAATGCTCGATAAGATCCAAACGTGTCTACTTAGA
ATCGACGTCGAGTCCCACAGCAAAGCCCCTCCGCAAGATCTGCTTGCGGT
TGGCTTCCCCTGAACCAGCTCGCCCCAGCGGACAATTAACTGGTAAGCAC
TGACCATCAGAAGCACCACTCCCACGAGCAGCAGAGCATCACCTACTCCA
CTTTCTCTGGCGTCGCACAGGGGGGGAAAAAAACGGAAAAAACGGTCAAC
AATACAAAAAGACAAAAACCCGTACGCAGAGGTGAGTCTTCCTCTCTCCC
TTTGCTCTCCCGCGTTGCCACCCATATGTATGGGCACGTGCGGTTGACGT
CAAGTGTAAGTTTGTTCGCACAGTAGCTACTATGGTTAACCATTGGTGCG
CGGCAGAGGCGACGTTAGGGGCCCATGTGGCGGCTGCGCTTCCCTCTCAC
AGTGAGGCGAGCTGTTTTTGAGTGTCGGTTGTCTGTTTGCTCTGCACCCT
TATCTTTAATAACCCGTGCTCCTTTTGTCGTCATGCCTCCGAATCACCGT
GCGCTACACATACCTGACCCGTGTGCCTGAAAGAGAGCGAAGCTTAGACT
GCCCCCTTTACCTCTGACCACCACCAGGCAGAAGAGATGGCATTTACGCC
CCTCTTCACGTCTTCACCAAAAACACCCATATGATCATCGTCCAAGCACA
CACCAAATAATCAAGAGTAGTCATCCATTACGCACGCTACCCTCCCCGAA
CCAACTCACCTGGTCCCCAGCTGGCATTGTCTTCGCTGGGTTCCCGCCGC
GAGAGGATATCCATGGCATCTAGGCGAAACGACCACCCGCGTGCTCAAAT
ATTGATAACGGTTTATCGGAAAGCGCCCCTTTAGATTCCATAATTTTTGT
CGCACACACTCAGCCTCGCACTCCCCCTTCTCCTTCCTGCTTCTCCCTCC
CTTCTACGATCCTTCTGTCCTCCACCCTCTTTCCTCCCCCCATCCTCCCT
GCTTCCGCCCATCCTCCCTTCCTCTTCCTCTCTTCCTATTTCAATCCTTT
CTTTTTATATTCACCTTCTTCCTCTGATTCGCCTTCCTCACAAAGCACTC
CTCCTTTTGCTCTCCTTTCTCCTCCAGTGAATCATTCCTCCACGCCTTAT
CGCTCGTTCCCCATCTTCCTGCCCCTCATTTTACCTGTCCCTTTCTCGAT
CCATCTTCTCTCATTTACTAATCTCCCCTTCTCTACATGCCTTCATTGCC
ATTTATCCTCCTGCCACACTAGTCCTCTTCTTCTCCTCCTCTCTTCTTAG
CTTTTATCCGCCATGTCATCACTCTTCTACAACCTCACTTCTTGCCCTCT
CCTCCGCTACTCTCGACTCGATTGATCTGATCTGATCAATGTCCGGCGTC
AGACATCGCAAGCTTTCTCCAACCTCAATCAAAGTACTCATTAACTTTCA
ATCCACAGATTGCAGGATTGCGCGTGCTATACCATGCGCCGCGCTCGTTC
TCTGTTTGCCCTTGGGATCACCTTCGCCCTTGCAGCGGCTGAGCCAATTG
AGCCGACGTTGATCCTCACCTCCATCAAGGCAATCGACGTGGACAGGGCG
AACAAGGACAAGTGGAGTGTCAAGGGCTACATCAACGACCCTGACGGCGA
TTTCGTCCCGGCCATTGGTGGACTTGGCTTGTCCACGACGCTCGTTAACG
GGGCCACCGACATAGTGAATGACTTGACCTTCGATGCGAATGATTGTAAT
GAACTTAAAAACGATGAGGGAGTCATTTGCAAGACTACGGGCACCCGTGT
CTCGATTAAGAGGACCAACAGGGTGCCCAAGGATGCTACGATCGAGGCAC
AGAGGAACCGCAACACGACCAGTGCATCTTCGTATTACAGGTTTACAGGT
GTTTTCCGCCGTCAGGAATTCGACAGCACCCTAGCGTCGCCTCTGACAGC
TGTCTTCGGTATCGATGGCTCTGGTGAGATTGGTGACACCACCTACAAAT
GCAAAAAGAGAGAAGGGGCCAGGGCTACCAAGCTCCTCTGCACGCCTGGC
GCCGCATACCCCACGCCTGCTCCATCTACAACACCTCCTCCTCCTCCTCC
TCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTC
CCTAGGTCCCTCGCCTTCTTCATCACTTGCGTAGATAAGGTCACAAAATG
AGTGAGCGTCCACTCGGCGTCCGAGTCTGGCAGAAGATGTTATACGTTAT
TTCTCTTAAATGTCCTATGTGTGTCATATTCTGTCATGTTCTGTATACCC
GCTTACAGCCTAGAAGCCCCAGATGCCTTTCCTAGGGCGTCGATTTCTCT
AAGTGCGTGGTAATAATTTTTTGTTCTGTGCACGCACGTGTGTATGAGTG
CATTTTGTTGCTCAAATACTACTTGTGTTTTGTGCTCGTATTCCTAGACG
TCTATGGGGGGGTATATTACGAGGGGTAGGATAAAGTTCCTCCGTTCCGA
TCCTTCCAACAACCTACCATAGTCAAGGACCAAAGCTACTTCCAAGGAAT
GTAATTTTTTCTTTTTCCACGGTATTTATGCATCGTTCTTCGGCGTCCTC
TTCGGTTTCTTCCGGACTTCATTCGATCTCTTCTGTTTCATCTTAACTTT
ATACGAGCCCGACATTCTTTTTGTACAGGATTTCTTCCTGTGTCTTTCAT
CCTCGCACATGCGCACAGGCCAAAAATCAAAACTCAATTATCACGTCATT
CCGTCCCTTTAAAAATGTTGGAGAATACCCTGGCCGTGTATCCAGCAAGC
TCAAACCAATTCAGTCATGTCTGCAATCCCCCCACATTGCTACACCAAGC
TTCACGACACCACCGTGCTATGTCGACGAGTGGAAGAGAGCTACTACCAT
TCTCGTAAATTCATTTATATATCTTGAGTACCAAAAGAAGCCCGCCCCGG
GTAACGAAAGTACCAGCATAGGGTCAGTGGCGTTCTCAGTTTTGGCGCGA
AGGTTCTCGTGAAACTTATTCGGAAAAATCACGCGACTTTATGTGTGATG
TTTCTCGAATGTTATCATCGCGCTCAAAACAAATGTGATGTTTCTCGATC
ACTTAGCGGATCATGGCACTAAAGAAGCCGCGTTCATAAAACGCGGATAA
ATCCCACCATCACGACGAATGAAGCCTGGAAAAGTACCTCGCGACTCGAG
GGGGCAGGCATAACATGCACATATTGTGATAGAGAGTAATATCGCCATCT
GGGTAGGAAAATTGAATTATTTCATATTTAATGGAAATTAGAAAAAAATA
AAAATTGAAACGAA

Coding sequence (CDS) from alignment at scaffold_5:1162167..1165580+

>mRNA_2777 ID=mRNA_2777|Name=jgi.p|Nanoce1779_2|628747|organism=Nannochloropsis oceanica|type=CDS|length=1038bp|location=Sequence derived from alignment at scaffold_5:1162167..1165580+ (Nannochloropsis oceanica)
ATGCGCCGCGCTCGTTCTCTGTTTGCCCTTGGGATCACCTTCGCCCTTGC
AGCGGCTGAGCCAATTGAGCCGACGTTGATCCTCACCTCCATCAAGGCAA
TCGACGTGGACAGGGCGAACAAGGACAAGTGGAGTGTCAAGGGCTACATC
AACGACCCTGACGGCGATTTCGTCCCGGCCATTGGTGGACTTGGCTTGTC
CACGACGCTCGTTAACGGGGCCACCGACATAGTGAATGACTTGACCTTCG
ATGCGAATGATTGTAATGAACTTAAAAACGATGAGGGAGTCATTTGCAAG
ACTACGGGCACCCGTGTCTCGATTAAGAGGACCAACAGGGTGCCCAAGGA
TGCTACGATCGAGGCACAGAGGAACCGCAACACGACCAGTGCATCTTCGT
ATTACAGGTTTACAGGTGTTTTCCGCCGTCAGGAATTCGACAGCACCCTA
GCGTCGCCTCTGACAGCTGTCTTCGGTATCGATGGCTCTGGTCCCTCGCC
TTCTTCATCACTTGCGTAGATGCGCCGCGCTCGTTCTCTGTTTGCCCTTG
GGATCACCTTCGCCCTTGCAGCGGCTGAGCCAATTGAGCCGACGTTGATC
CTCACCTCCATCAAGGCAATCGACGTGGACAGGGCGAACAAGGACAAGTG
GAGTGTCAAGGGCTACATCAACGACCCTGACGGCGATTTCGTCCCGGCCA
TTGGTGGACTTGGCTTGTCCACGACGCTCGTTAACGGGGCCACCGACATA
GTGAATGACTTGACCTTCGATGCGAATGATTGTAATGAACTTAAAAACGA
TGAGGGAGTCATTTGCAAGACTACGGGCACCCGTGTCTCGATTAAGAGGA
CCAACAGGGTGCCCAAGGATGCTACGATCGAGGCACAGAGGAACCGCAAC
ACGACCAGTGCATCTTCGTATTACAGGTTTACAGGTGTTTTCCGCCGTCA
GGAATTCGACAGCACCCTAGCGTCGCCTCTGACAGCTGTCTTCGGTATCG
ATGGCTCTGGTCCCTCGCCTTCTTCATCACTTGCGTAG

Synonyms

Publications