jgi.p|Nanoce1779_2|581484, mRNA_2776 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|581484
Unique NamemRNA_2776
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length620
Alignment locationscaffold_5:1160109..1160728 -

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Properties
Property NameValue
TranscriptId581570
TrackFilteredModels2
ProteinId581484
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:1160109..1160728 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|581484gene_2776Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|581484mRNA_2776-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2776CDS_2776Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2776 ID=mRNA_2776|Name=jgi.p|Nanoce1779_2|581484|organism=Nannochloropsis oceanica|type=mRNA|length=620bp
GTGTATTGTTATTTACGTCATATTCTCCGTCCCTCCTTTTCCTCTTTTCC
TCCTCTTTATTGTTTTCCTCTAGCCGCATCACAAGGACTGTGGCAGTAAC
GGGACGATTTCTCTTATGAAATTTATTACGTGCAACTGTTTTTATCTTAT
CTATATAGGCGCGATAAGAGGCTTCTCCTGCTTTTTCAAATCATTTCTCC
CTCTCACCCTTCCAATAACCTCCTACTCTTTGTTTTCATTTTATTGTCCT
CCTTTGCTCCCCCCAAGCTGGTTGTTGTTGCTATTAATGTCAATTTCCTA
TTAAAAAACAATTAGGTAGCCCTACTCCCGCCTTCCTCCCTTCCCTCTAT
TCTGCTGCCAAACTAAGCTGTTGACGACGCAATAATTCTTCTCTGACAGA
GGCACATTTCTACCTCTATCCACGCCTCCTCCCCCACGCCCTCCTCCTCA
CCCTCCATCTTAGTCCGACCCGAGCCTCGAAGGAGAAGAGGAAGAGGGGG
AAGAGGAAGGGACGGAGGAGGTGGTCATGAAGCGCATCAGACTCCGGGCT
GCCTCCATCTCGGCTGCCTCCCTCCTTCCTGCCGCCACCGCTGCTGCCGC
TGCCGCTGCCGCTGCTGCTG
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protein sequence of jgi.p|Nanoce1779_2|581484

>mRNA_2776-protein ID=mRNA_2776-protein|Name=jgi.p|Nanoce1779_2|581484|organism=Nannochloropsis oceanica|type=polypeptide|length=63bp
MKFITCNCFYLIYIGAIRGFSCFFKSFLPLTLPITSYSLFSFYCPPLLPP
SWLLLLLMSISY*
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mRNA from alignment at scaffold_5:1160109..1160728-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2776 ID=mRNA_2776|Name=jgi.p|Nanoce1779_2|581484|organism=Nannochloropsis oceanica|type=mRNA|length=620bp|location=Sequence derived from alignment at scaffold_5:1160109..1160728- (Nannochloropsis oceanica)
GTGTATTGTTATTTACGTCATATTCTCCGTCCCTCCTTTTCCTCTTTTCC
TCCTCTTTATTGTTTTCCTCTAGCCGCATCACAAGGACTGTGGCAGTAAC
GGGACGATTTCTCTTATGAAATTTATTACGTGCAACTGTTTTTATCTTAT
CTATATAGGCGCGATAAGAGGCTTCTCCTGCTTTTTCAAATCATTTCTCC
CTCTCACCCTTCCAATAACCTCCTACTCTTTGTTTTCATTTTATTGTCCT
CCTTTGCTCCCCCCAAGCTGGTTGTTGTTGCTATTAATGTCAATTTCCTA
TTAAAAAACAATTAGGTAGCCCTACTCCCGCCTTCCTCCCTTCCCTCTAT
TCTGCTGCCAAACTAAGCTGTTGACGACGCAATAATTCTTCTCTGACAGA
GGCACATTTCTACCTCTATCCACGCCTCCTCCCCCACGCCCTCCTCCTCA
CCCTCCATCTTAGTCCGACCCGAGCCTCGAAGGAGAAGAGGAAGAGGGGG
AAGAGGAAGGGACGGAGGAGGTGGTCATGAAGCGCATCAGACTCCGGGCT
GCCTCCATCTCGGCTGCCTCCCTCCTTCCTGCCGCCACCGCTGCTGCCGC
TGCCGCTGCCGCTGCTGCTG
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Coding sequence (CDS) from alignment at scaffold_5:1160109..1160728-

>mRNA_2776 ID=mRNA_2776|Name=jgi.p|Nanoce1779_2|581484|organism=Nannochloropsis oceanica|type=CDS|length=189bp|location=Sequence derived from alignment at scaffold_5:1160109..1160728- (Nannochloropsis oceanica)
ATGAAATTTATTACGTGCAACTGTTTTTATCTTATCTATATAGGCGCGAT
AAGAGGCTTCTCCTGCTTTTTCAAATCATTTCTCCCTCTCACCCTTCCAA
TAACCTCCTACTCTTTGTTTTCATTTTATTGTCCTCCTTTGCTCCCCCCA
AGCTGGTTGTTGTTGCTATTAATGTCAATTTCCTATTAA
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Synonyms
Publications