jgi.p|Nanoce1779_2|581476, mRNA_2773 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|581476
Unique NamemRNA_2773
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length959
Alignment locationscaffold_5:1154076..1155034 -

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Properties
Property NameValue
TranscriptId581562
TrackFilteredModels2
ProteinId581476
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:1154076..1155034 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|581476gene_2773Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|581476mRNA_2773-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2773CDS_2773Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2773 ID=mRNA_2773|Name=jgi.p|Nanoce1779_2|581476|organism=Nannochloropsis oceanica|type=mRNA|length=959bp
TCCGTCGTCATTATTATTTTTATAAAGTCATGCGGTGCTCATACTTCCTT
TCCTGCCTCTTCCTCCTCCTCCACCTCCTCCTCCTCTACCTCGTCTTCGC
CACGCTCGCCTCAATTATGGATGCTTTTGTTGTGATACCTTCCTTTTTCT
CATTCTTTTTATTTTCTTCTTCGTGTCTTGACTTATCACATGCCGGCTTT
ATCTTCATACCTCTTAGGACATTCCTCATCTTTTACTCCTCCTCTCTTTG
TATCTCCTTTTTCCAACCTTCATTCACATATAGCACAACCCCTTTTTTCT
TCGATTTCTCCCTTTCATTTTTTTCACTCACAAGCCACCACTCTTGCGCT
TATTTCCCACACCCTCACTCTTCCTTCTTCCTACATCGCCGCTCCCTCTT
CCTGTAGGCTTAAGCGCGCGAGCCCGGCCGCAGGTGCCTGTTCAAGATTA
ATTGTGTAGTGCGACATGACCATTACCACGCCACGAATAGTGCAGTGTTG
GCATAGTATAAAGTCACGTGTACAGCGAAGTTGACTATTACCCCTCCGTC
CCTCCTCCTCTCCCTACCTGATGAGCGCTGTCAGATCCTCCTTGGTGTTG
GTGCGGATGTCTGTCAAACCCGCCCCAGCCGTCCCGTTTTTCACCCGAGT
GCTGCTACTGCTGCTGCTGCTTAGGGCATTCACCCCTCCCTCCTCCCCGA
CCTCCTCCTCCCCTGCGTCCTGGCACCGGCGACGCTCCAGTGCAGGCAGC
AAGGCTAGAGGGATTAAGGGAGAGGAAGAGGGCGTGCGTGTATCTCAGCG
AAGACAGTCCACGAATAACATCAAGGCATAAATGAAAAAGGCGCTTCTTT
TCCCCTCGTTCATCTGCCCTCTGTCCGTCCATCCGTCCCTCCCTCCCTCC
CCCTCTCCCTCCCTTCTTCCCTCCCCCTGCACTTACCATCTGCGTCATCT
ACGAGCTCG
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protein sequence of jgi.p|Nanoce1779_2|581476

>mRNA_2773-protein ID=mRNA_2773-protein|Name=jgi.p|Nanoce1779_2|581476|organism=Nannochloropsis oceanica|type=polypeptide|length=126bp
MRCSYFLSCLFLLLHLLLLYLVFATLASIMDAFVVIPSFFSFFLFSSSCL
DLSHAGFIFIPLRTFLIFYSSSLCISFFQPSFTYSTTPFFFDFSLSFFSL
TSHHSCAYFPHPHSSFFLHRRSLFL*
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mRNA from alignment at scaffold_5:1154076..1155034-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2773 ID=mRNA_2773|Name=jgi.p|Nanoce1779_2|581476|organism=Nannochloropsis oceanica|type=mRNA|length=959bp|location=Sequence derived from alignment at scaffold_5:1154076..1155034- (Nannochloropsis oceanica)
TCCGTCGTCATTATTATTTTTATAAAGTCATGCGGTGCTCATACTTCCTT
TCCTGCCTCTTCCTCCTCCTCCACCTCCTCCTCCTCTACCTCGTCTTCGC
CACGCTCGCCTCAATTATGGATGCTTTTGTTGTGATACCTTCCTTTTTCT
CATTCTTTTTATTTTCTTCTTCGTGTCTTGACTTATCACATGCCGGCTTT
ATCTTCATACCTCTTAGGACATTCCTCATCTTTTACTCCTCCTCTCTTTG
TATCTCCTTTTTCCAACCTTCATTCACATATAGCACAACCCCTTTTTTCT
TCGATTTCTCCCTTTCATTTTTTTCACTCACAAGCCACCACTCTTGCGCT
TATTTCCCACACCCTCACTCTTCCTTCTTCCTACATCGCCGCTCCCTCTT
CCTGTAGGCTTAAGCGCGCGAGCCCGGCCGCAGGTGCCTGTTCAAGATTA
ATTGTGTAGTGCGACATGACCATTACCACGCCACGAATAGTGCAGTGTTG
GCATAGTATAAAGTCACGTGTACAGCGAAGTTGACTATTACCCCTCCGTC
CCTCCTCCTCTCCCTACCTGATGAGCGCTGTCAGATCCTCCTTGGTGTTG
GTGCGGATGTCTGTCAAACCCGCCCCAGCCGTCCCGTTTTTCACCCGAGT
GCTGCTACTGCTGCTGCTGCTTAGGGCATTCACCCCTCCCTCCTCCCCGA
CCTCCTCCTCCCCTGCGTCCTGGCACCGGCGACGCTCCAGTGCAGGCAGC
AAGGCTAGAGGGATTAAGGGAGAGGAAGAGGGCGTGCGTGTATCTCAGCG
AAGACAGTCCACGAATAACATCAAGGCATAAATGAAAAAGGCGCTTCTTT
TCCCCTCGTTCATCTGCCCTCTGTCCGTCCATCCGTCCCTCCCTCCCTCC
CCCTCTCCCTCCCTTCTTCCCTCCCCCTGCACTTACCATCTGCGTCATCT
ACGAGCTCG
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Coding sequence (CDS) from alignment at scaffold_5:1154076..1155034-

>mRNA_2773 ID=mRNA_2773|Name=jgi.p|Nanoce1779_2|581476|organism=Nannochloropsis oceanica|type=CDS|length=378bp|location=Sequence derived from alignment at scaffold_5:1154076..1155034- (Nannochloropsis oceanica)
ATGCGGTGCTCATACTTCCTTTCCTGCCTCTTCCTCCTCCTCCACCTCCT
CCTCCTCTACCTCGTCTTCGCCACGCTCGCCTCAATTATGGATGCTTTTG
TTGTGATACCTTCCTTTTTCTCATTCTTTTTATTTTCTTCTTCGTGTCTT
GACTTATCACATGCCGGCTTTATCTTCATACCTCTTAGGACATTCCTCAT
CTTTTACTCCTCCTCTCTTTGTATCTCCTTTTTCCAACCTTCATTCACAT
ATAGCACAACCCCTTTTTTCTTCGATTTCTCCCTTTCATTTTTTTCACTC
ACAAGCCACCACTCTTGCGCTTATTTCCCACACCCTCACTCTTCCTTCTT
CCTACATCGCCGCTCCCTCTTCCTGTAG
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Synonyms
Publications