jgi.p|Nanoce1779_2|576788, mRNA_277 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|576788
Unique NamemRNA_277
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length972
Alignment locationscaffold_3:686395..687366 +

Link to JBrowse

Properties
Property NameValue
TranscriptId576874
TrackFilteredModels2
ProteinId576788
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:686395..687366 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|576788gene_277Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|576788mRNA_277-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_277CDS_277Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_277 ID=mRNA_277|Name=jgi.p|Nanoce1779_2|576788|organism=Nannochloropsis oceanica|type=mRNA|length=972bp
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGGTGAA
GCGACGACGAGCAGGCAAGAATACTTTCGAAGTGGGGGTTACGGCTGTGG
AATTGCCCGATGATAATATTGACGAGTACTCGAGCGGCGAAGAGGGTGGT
GGAGGAAGAGGGAGGGAGGAGGGAGCGGGGTCCAAGGAGGAAGGTCACTG
TGTAGCAGCAGCAACAGTAGCACCTGCAGCACCAGTAGCAGAACCACCAT
CGGCGGTGGTGGGCATGGCACCAGCAGCAGCAGCAGGAGATTCTGCTCCG
GTCGTGGTCTTCCCCCCGGCCCCTCGTATAGTGCAGGCAAAGCCCGTCGC
CGCTGCCAAGAGGATACTGTCCACGTCAGCAGCAACAGCAGCCGCAGCAG
CCGCAGCAGCCGCAGCAACCACAACCACAACCACAACAAGAGTTAAGGAA
GCATCCTGGCCAACGGTACCTATTCTACAGCAAATATCACCCCAGATAGA
GCCGCAAATATCAGTCGCTGCCTTTGTCCCATCTTCCGTCTCTTCCTCCT
CTTTTCTTCCACCGGCAGTCAGAGCCCCTCCTCCGACTCCAGACAGTACT
ACGACTGTATCGTCTGCTCCTTCCTCCTCTTCCTCCTCATCCTCTTCCTT
TTCCTCCTTTTCGGCAAGGTCTCATGCAGCGACACCCGTACCCAGCCAGC
AGCAGCAACAACCATCACTACCCTCCCAACCCACGCATAAAACAAAATGG
CAGCAGCAGCAGCCACAGGGCGGTGCCACACGGGAGAAAAAGAGCAAGCA
AACTACGTTGTTGCAGTTTCTGTTTATAGATGGAGGAGGTGGAAGCCGTG
TGGTGAAGAAATCATGATAAACGGATGATAAACGGATGACGGTGATGTAA
ACGAGAGAGGGTGCTTTGGTAAAGTAAAAGTAAACTAGGTCGATAATCGA
TGAAGGTTGCGTCTGTTTGTGA
back to top

protein sequence of jgi.p|Nanoce1779_2|576788

>mRNA_277-protein ID=mRNA_277-protein|Name=jgi.p|Nanoce1779_2|576788|organism=Nannochloropsis oceanica|type=polypeptide|length=201bp
MAPAAAAGDSAPVVVFPPAPRIVQAKPVAAAKRILSTSAATAAAAAAAAA
ATTTTTTTRVKEASWPTVPILQQISPQIEPQISVAAFVPSSVSSSSFLPP
AVRAPPPTPDSTTTVSSAPSSSSSSSSSFSSFSARSHAATPVPSQQQQQP
SLPSQPTHKTKWQQQQPQGGATREKKSKQTTLLQFLFIDGGGGSRVVKKS
*
back to top

mRNA from alignment at scaffold_3:686395..687366+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_277 ID=mRNA_277|Name=jgi.p|Nanoce1779_2|576788|organism=Nannochloropsis oceanica|type=mRNA|length=972bp|location=Sequence derived from alignment at scaffold_3:686395..687366+ (Nannochloropsis oceanica)
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGGTGAA
GCGACGACGAGCAGGCAAGAATACTTTCGAAGTGGGGGTTACGGCTGTGG
AATTGCCCGATGATAATATTGACGAGTACTCGAGCGGCGAAGAGGGTGGT
GGAGGAAGAGGGAGGGAGGAGGGAGCGGGGTCCAAGGAGGAAGGTCACTG
TGTAGCAGCAGCAACAGTAGCACCTGCAGCACCAGTAGCAGAACCACCAT
CGGCGGTGGTGGGCATGGCACCAGCAGCAGCAGCAGGAGATTCTGCTCCG
GTCGTGGTCTTCCCCCCGGCCCCTCGTATAGTGCAGGCAAAGCCCGTCGC
CGCTGCCAAGAGGATACTGTCCACGTCAGCAGCAACAGCAGCCGCAGCAG
CCGCAGCAGCCGCAGCAACCACAACCACAACCACAACAAGAGTTAAGGAA
GCATCCTGGCCAACGGTACCTATTCTACAGCAAATATCACCCCAGATAGA
GCCGCAAATATCAGTCGCTGCCTTTGTCCCATCTTCCGTCTCTTCCTCCT
CTTTTCTTCCACCGGCAGTCAGAGCCCCTCCTCCGACTCCAGACAGTACT
ACGACTGTATCGTCTGCTCCTTCCTCCTCTTCCTCCTCATCCTCTTCCTT
TTCCTCCTTTTCGGCAAGGTCTCATGCAGCGACACCCGTACCCAGCCAGC
AGCAGCAACAACCATCACTACCCTCCCAACCCACGCATAAAACAAAATGG
CAGCAGCAGCAGCCACAGGGCGGTGCCACACGGGAGAAAAAGAGCAAGCA
AACTACGTTGTTGCAGTTTCTGTTTATAGATGGAGGAGGTGGAAGCCGTG
TGGTGAAGAAATCATGATAAACGGATGATAAACGGATGACGGTGATGTAA
ACGAGAGAGGGTGCTTTGGTAAAGTAAAAGTAAACTAGGTCGATAATCGA
TGAAGGTTGCGTCTGTTTGTGA
back to top

Coding sequence (CDS) from alignment at scaffold_3:686395..687366+

>mRNA_277 ID=mRNA_277|Name=jgi.p|Nanoce1779_2|576788|organism=Nannochloropsis oceanica|type=CDS|length=603bp|location=Sequence derived from alignment at scaffold_3:686395..687366+ (Nannochloropsis oceanica)
ATGGCACCAGCAGCAGCAGCAGGAGATTCTGCTCCGGTCGTGGTCTTCCC
CCCGGCCCCTCGTATAGTGCAGGCAAAGCCCGTCGCCGCTGCCAAGAGGA
TACTGTCCACGTCAGCAGCAACAGCAGCCGCAGCAGCCGCAGCAGCCGCA
GCAACCACAACCACAACCACAACAAGAGTTAAGGAAGCATCCTGGCCAAC
GGTACCTATTCTACAGCAAATATCACCCCAGATAGAGCCGCAAATATCAG
TCGCTGCCTTTGTCCCATCTTCCGTCTCTTCCTCCTCTTTTCTTCCACCG
GCAGTCAGAGCCCCTCCTCCGACTCCAGACAGTACTACGACTGTATCGTC
TGCTCCTTCCTCCTCTTCCTCCTCATCCTCTTCCTTTTCCTCCTTTTCGG
CAAGGTCTCATGCAGCGACACCCGTACCCAGCCAGCAGCAGCAACAACCA
TCACTACCCTCCCAACCCACGCATAAAACAAAATGGCAGCAGCAGCAGCC
ACAGGGCGGTGCCACACGGGAGAAAAAGAGCAAGCAAACTACGTTGTTGC
AGTTTCTGTTTATAGATGGAGGAGGTGGAAGCCGTGTGGTGAAGAAATCA
TGA
back to top
Synonyms
Publications