jgi.p|Nanoce1779_2|581452, mRNA_2765 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|581452
Unique NamemRNA_2765
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length764
Alignment locationscaffold_5:1130287..1131328 +

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Properties
Property NameValue
TranscriptId581538
TrackFilteredModels2
ProteinId581452
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:1130287..1131328 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|581452gene_2765Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|581452mRNA_2765-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2765CDS_2765Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2765 ID=mRNA_2765|Name=jgi.p|Nanoce1779_2|581452|organism=Nannochloropsis oceanica|type=mRNA|length=764bp
GTTGGATGCCTGCTGCTCGGAAGGTTAGGAAGGGGGGGAGGGAGGGTAGG
AGGACGGCTGGATGGGACACAGGAATGGAGTGTTGGAAAGACAAGCTTTA
CTTGACCCTACTGCCCTCTCTAACTAGCTTCCCCTCCCTCAGCACCTTCC
TCATCCCCCGTCATTTTGCATTTTTGAACATTTTTCTCTAAACTCATCGT
CCAACCCACCCTCTCTCGCTCCCTCAGATATTTCCTTCATTCCTACGCCT
CGAAACTCACTGCCGAAAGCGAAGAATTTCGGGGTTTGTTGGTCGCGCTG
GAGTGGCGCCCGTGGCGGCTGCTGTTGCTGTTACGCATGGCCCTGATGCC
GGGGGTGGTCAAGAACTACGGAGTCGCCCTGCTTCCCTCCCTCCCCATCC
TTACCGTCTTCCTTTGTGCCTTCCTCGGTGATATGCCGTACTCCTTGCTC
TGGTCGTTCGTGGGCAGTCGGGGAGCAAGCCTCGTGGGAATGCTGGAGGG
GGAAATGGCGCGAACGCCGGTAGAGACTGCCTTGTCGTTGCTAGGAATCA
TTTTCCTGGTCCTGCTGGTGGCAGGGGTCCGGCACACAGTCCAGGGGGCA
GTGGAGGCGTCAAAGCGAGAGGCCGAGGAGAGCAAGGACGAGTTCCAGTA
CGACGAACGAGTGTAGATACAATACATAGGCGGAGGGAGGGAGGGAGGGA
GGGAGGGCGGGAAGGAGGGGCACGTGTCCAAAAGCCACTTGAATTAAAAC
ATAACAAAGCAACA
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protein sequence of jgi.p|Nanoce1779_2|581452

>mRNA_2765-protein ID=mRNA_2765-protein|Name=jgi.p|Nanoce1779_2|581452|organism=Nannochloropsis oceanica|type=polypeptide|length=110bp
MALMPGVVKNYGVALLPSLPILTVFLCAFLGDMPYSLLWSFVGSRGASLV
GMLEGEMARTPVETALSLLGIIFLVLLVAGVRHTVQGAVEASKREAEESK
DEFQYDERV*
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mRNA from alignment at scaffold_5:1130287..1131328+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2765 ID=mRNA_2765|Name=jgi.p|Nanoce1779_2|581452|organism=Nannochloropsis oceanica|type=mRNA|length=1042bp|location=Sequence derived from alignment at scaffold_5:1130287..1131328+ (Nannochloropsis oceanica)
GTTGGATGCCTGCTGCTCGGAAGGTTAGGAAGGGGGGGAGGGAGGGTAGG
AGGACGGCTGGATGGGACACAGGAATGGAGTGTTGGAAAGACAAGCTTTA
CTTGACCCTACTGCCCTCTCTAACTAGCTTCCCCTCCCTCAGCACCTTCC
TCATCCCCCGTCATTTTGCATTTTTGAACATTTTTCTCTAAACTCATCGT
CCAACCCACCCTCTCTCGCTCCCTCAGATATTTCCTTCATTCCTACGCCT
CGAAACTCACTGCCGAAAGCGAAGAATTTCGGGGTTTGTTGGTCGCGCTG
GAGTGGCGCCCGTGGCGGCTGCTGTTGCTGTTACGCATGGCCCTGATGCC
GGGGGTGGTCAAGAACTACGGTGAGGAGGGAGGGAAGGAGGGAGGGAGGG
AGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGAAAGGAGGTGGTAGA
CGGAGGGGGCCCGAGAAGCTGACATTGCCCTCCCTCCCTCCCTCCCTCAG
GAGTCGCCCTGCTTCCCTCCCTCCCCATCCTTACCGTCTTCCTTTGTGCC
TTCCTCGGTGATATGCCGTACTCCTTGCTCTGGTCGTTCGTGGGCAGTCG
GGGAGCAAGCCTCGTGGGAATGCTGGAGGGGGAAATGGCGCGAACGCCGG
TAGAGACTGCCTTGTCGTTGCTAGGTAGGTAGGGAGGGAGGGAGGGAGGG
AGGGAGGGAGGGAGGGAGGGAGATGAAAGAGGGAGGAGGGAAGGACGGGA
GACTGCGCGAGATGTAGGAAATTAATGTTATCCCCCTGCGCCCTCCCTCC
TTCCCCCCCTCCCTTCTTGCAGGAATCATTTTCCTGGTCCTGCTGGTGGC
AGGGGTCCGGCACACAGTCCAGGGGGCAGTGGAGGCGTCAAAGCGAGAGG
CCGAGGAGAGCAAGGACGAGTTCCAGTACGACGAACGAGTGTAGATACAA
TACATAGGCGGAGGGAGGGAGGGAGGGAGGGAGGGCGGGAAGGAGGGGCA
CGTGTCCAAAAGCCACTTGAATTAAAACATAACAAAGCAACA
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Coding sequence (CDS) from alignment at scaffold_5:1130287..1131328+

>mRNA_2765 ID=mRNA_2765|Name=jgi.p|Nanoce1779_2|581452|organism=Nannochloropsis oceanica|type=CDS|length=990bp|location=Sequence derived from alignment at scaffold_5:1130287..1131328+ (Nannochloropsis oceanica)
ATGGCCCTGATGCCGGGGGTGGTCAAGAACTACGGAGTCGCCCTGCTTCC
CTCCCTCCCCATCCTTACCGTCTTCCTTTGTGCCTTCCTCGGTGATATGC
CGTACTCCTTGCTCTGGTCGTTCGTGGGCAGTCGGGGAGCAAGCCTCGTG
GGAATGCTGGAGGGGGAAATGGCGCGAACGCCGGTAGAGACTGCCTTGTC
GTTGCTAGGAATCATTTTCCTGGTCCTGCTGGTGGCAGGGGTCCGGCACA
CAGTCCAGGGGGCAGTGGAGGCGTCAAAGCGAGAGGCCGAGGAGAGCAAG
GACGAGTTCCAGTACGACGAACGAGTGTAGATGGCCCTGATGCCGGGGGT
GGTCAAGAACTACGGAGTCGCCCTGCTTCCCTCCCTCCCCATCCTTACCG
TCTTCCTTTGTGCCTTCCTCGGTGATATGCCGTACTCCTTGCTCTGGTCG
TTCGTGGGCAGTCGGGGAGCAAGCCTCGTGGGAATGCTGGAGGGGGAAAT
GGCGCGAACGCCGGTAGAGACTGCCTTGTCGTTGCTAGGAATCATTTTCC
TGGTCCTGCTGGTGGCAGGGGTCCGGCACACAGTCCAGGGGGCAGTGGAG
GCGTCAAAGCGAGAGGCCGAGGAGAGCAAGGACGAGTTCCAGTACGACGA
ACGAGTGTAGATGGCCCTGATGCCGGGGGTGGTCAAGAACTACGGAGTCG
CCCTGCTTCCCTCCCTCCCCATCCTTACCGTCTTCCTTTGTGCCTTCCTC
GGTGATATGCCGTACTCCTTGCTCTGGTCGTTCGTGGGCAGTCGGGGAGC
AAGCCTCGTGGGAATGCTGGAGGGGGAAATGGCGCGAACGCCGGTAGAGA
CTGCCTTGTCGTTGCTAGGAATCATTTTCCTGGTCCTGCTGGTGGCAGGG
GTCCGGCACACAGTCCAGGGGGCAGTGGAGGCGTCAAAGCGAGAGGCCGA
GGAGAGCAAGGACGAGTTCCAGTACGACGAACGAGTGTAG
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Synonyms
Publications