jgi.p|Nanoce1779_2|581447, mRNA_2764 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|581447
Unique NamemRNA_2764
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1383
Alignment locationscaffold_5:1126741..1128123 +

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Properties
Property NameValue
TranscriptId581533
TrackFilteredModels2
ProteinId581447
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:1126741..1128123 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|581447gene_2764Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|581447mRNA_2764-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2764CDS_2764Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2764 ID=mRNA_2764|Name=jgi.p|Nanoce1779_2|581447|organism=Nannochloropsis oceanica|type=mRNA|length=1383bp
TGTAGGTTGAAAAGGGGAAGGGGGAACAGCTGAATGAGAATGGCTAGAAA
GTGTCGCTGATGTCTGTATTTAAAGCAACGCAGGACAAGTAATGGGTATT
TGATGAAGAAAAGATGAAATGTGGGTATAGTATAGGAACACGATAATTAT
GAAGTGAAGGAGATAGTTTTAAGCGCGGTAGCTCTTATTATGTAACACAG
GACTGACGCGCCTCCATATTCTTCTACAGACCGTCTCTCTCAAGAAAGTC
TAATTTGCACACAACCCTTATCCCCCGACAGAACTCACAGATCCATGATC
ATCCTCACGTTTTGTCCGCTCCTCCTCCTTGTATTTCTTACGCCCGCCAA
CGCCGACCTGGCTCTTCTCCCTACCCGGGATGCTGCCCGAAGAATGACCT
GGGCACAGCTCGACCAAATTTTTAAGGAAGGCACAATCGATGAAGGCATT
CCCGAGGGTTTCTCGTATGGCTACGGCCTGGTCAACCCCTCCTATCCTGG
GTTTTACCAGAGGGCTGCAGACATGTTTTGGAACGGCAAGCGGTTCGAAG
CCAAATCGGGGGAGAACTGTCATGGCCGAGACTGCGGCCAAAAGGGTGTG
GTGTTCAACTATCTGAGCGTGGTCGATCACGTCAACTGGCAAGAAATTCC
CGGAGCTGCTTTGATTGGCCAGCTGAAGGACGGCGACCCCTCCTTGGCCC
CGCTCCAGCTCGACGACAAGCCCTCCGTCCTAATCGACTACCATCGAGTC
GGCGGCTCGTACGACGAGCTCCGCTTGGTGAACAGTAAAGAACGAATCTA
TCTCGGGCGAGGCCTGGATTGGCTCATGCCGGAGGTGCTTGCGTACTTTG
TGATTCAGTTCTACGACACTCCTGAAAGAAAAGAATTGGCGCTTGGCACG
CGTTGCTATTACCAGGCACGCGAAAGTGCTCGCCTTGCAGCAGGTGCCAC
GGAAGGATCGAATCGAGAGCAGATACTGCAAGCGACGCCAGAAAACTCGT
GGAAATGGGAGGGGCTGGACACGGAGGGAGTTATGACAGCAGTGACGGTT
GGCATGTCCGGCGGAGGAGACACAAGCTGTCCAGAGATGCTGGAGCGATT
GGGAGAGCGCCTTCGAGGGGCGGTAAGAAGTGCAGGAGTGAACAAAGGCA
ACTAAGCATTTGCGGAAGCAGAAAGTATAGCAGGGTGGATTGTTATAAGA
AATGGTTTTAAGAGCGATGGTCATAAAGAAGAAGATGGGGGAAAAGCACG
GACTGTACAGAAGATTATGTAAGTTTTTTGCTCTTTTTCTTCTCTGGGGT
TTTAATCACCATCACGTGCTGTGCCACCGGCATGATGGCAGGAGGAGAAG
AAGAGATGGGAGGAGAAGGTTCAGAAGGCGAGG
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protein sequence of jgi.p|Nanoce1779_2|581447

>mRNA_2764-protein ID=mRNA_2764-protein|Name=jgi.p|Nanoce1779_2|581447|organism=Nannochloropsis oceanica|type=polypeptide|length=287bp
MIILTFCPLLLLVFLTPANADLALLPTRDAARRMTWAQLDQIFKEGTIDE
GIPEGFSYGYGLVNPSYPGFYQRAADMFWNGKRFEAKSGENCHGRDCGQK
GVVFNYLSVVDHVNWQEIPGAALIGQLKDGDPSLAPLQLDDKPSVLIDYH
RVGGSYDELRLVNSKERIYLGRGLDWLMPEVLAYFVIQFYDTPERKELAL
GTRCYYQARESARLAAGATEGSNREQILQATPENSWKWEGLDTEGVMTAV
TVGMSGGGDTSCPEMLERLGERLRGAVRSAGVNKGN*
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mRNA from alignment at scaffold_5:1126741..1128123+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2764 ID=mRNA_2764|Name=jgi.p|Nanoce1779_2|581447|organism=Nannochloropsis oceanica|type=mRNA|length=1383bp|location=Sequence derived from alignment at scaffold_5:1126741..1128123+ (Nannochloropsis oceanica)
TGTAGGTTGAAAAGGGGAAGGGGGAACAGCTGAATGAGAATGGCTAGAAA
GTGTCGCTGATGTCTGTATTTAAAGCAACGCAGGACAAGTAATGGGTATT
TGATGAAGAAAAGATGAAATGTGGGTATAGTATAGGAACACGATAATTAT
GAAGTGAAGGAGATAGTTTTAAGCGCGGTAGCTCTTATTATGTAACACAG
GACTGACGCGCCTCCATATTCTTCTACAGACCGTCTCTCTCAAGAAAGTC
TAATTTGCACACAACCCTTATCCCCCGACAGAACTCACAGATCCATGATC
ATCCTCACGTTTTGTCCGCTCCTCCTCCTTGTATTTCTTACGCCCGCCAA
CGCCGACCTGGCTCTTCTCCCTACCCGGGATGCTGCCCGAAGAATGACCT
GGGCACAGCTCGACCAAATTTTTAAGGAAGGCACAATCGATGAAGGCATT
CCCGAGGGTTTCTCGTATGGCTACGGCCTGGTCAACCCCTCCTATCCTGG
GTTTTACCAGAGGGCTGCAGACATGTTTTGGAACGGCAAGCGGTTCGAAG
CCAAATCGGGGGAGAACTGTCATGGCCGAGACTGCGGCCAAAAGGGTGTG
GTGTTCAACTATCTGAGCGTGGTCGATCACGTCAACTGGCAAGAAATTCC
CGGAGCTGCTTTGATTGGCCAGCTGAAGGACGGCGACCCCTCCTTGGCCC
CGCTCCAGCTCGACGACAAGCCCTCCGTCCTAATCGACTACCATCGAGTC
GGCGGCTCGTACGACGAGCTCCGCTTGGTGAACAGTAAAGAACGAATCTA
TCTCGGGCGAGGCCTGGATTGGCTCATGCCGGAGGTGCTTGCGTACTTTG
TGATTCAGTTCTACGACACTCCTGAAAGAAAAGAATTGGCGCTTGGCACG
CGTTGCTATTACCAGGCACGCGAAAGTGCTCGCCTTGCAGCAGGTGCCAC
GGAAGGATCGAATCGAGAGCAGATACTGCAAGCGACGCCAGAAAACTCGT
GGAAATGGGAGGGGCTGGACACGGAGGGAGTTATGACAGCAGTGACGGTT
GGCATGTCCGGCGGAGGAGACACAAGCTGTCCAGAGATGCTGGAGCGATT
GGGAGAGCGCCTTCGAGGGGCGGTAAGAAGTGCAGGAGTGAACAAAGGCA
ACTAAGCATTTGCGGAAGCAGAAAGTATAGCAGGGTGGATTGTTATAAGA
AATGGTTTTAAGAGCGATGGTCATAAAGAAGAAGATGGGGGAAAAGCACG
GACTGTACAGAAGATTATGTAAGTTTTTTGCTCTTTTTCTTCTCTGGGGT
TTTAATCACCATCACGTGCTGTGCCACCGGCATGATGGCAGGAGGAGAAG
AAGAGATGGGAGGAGAAGGTTCAGAAGGCGAGG
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Coding sequence (CDS) from alignment at scaffold_5:1126741..1128123+

>mRNA_2764 ID=mRNA_2764|Name=jgi.p|Nanoce1779_2|581447|organism=Nannochloropsis oceanica|type=CDS|length=861bp|location=Sequence derived from alignment at scaffold_5:1126741..1128123+ (Nannochloropsis oceanica)
ATGATCATCCTCACGTTTTGTCCGCTCCTCCTCCTTGTATTTCTTACGCC
CGCCAACGCCGACCTGGCTCTTCTCCCTACCCGGGATGCTGCCCGAAGAA
TGACCTGGGCACAGCTCGACCAAATTTTTAAGGAAGGCACAATCGATGAA
GGCATTCCCGAGGGTTTCTCGTATGGCTACGGCCTGGTCAACCCCTCCTA
TCCTGGGTTTTACCAGAGGGCTGCAGACATGTTTTGGAACGGCAAGCGGT
TCGAAGCCAAATCGGGGGAGAACTGTCATGGCCGAGACTGCGGCCAAAAG
GGTGTGGTGTTCAACTATCTGAGCGTGGTCGATCACGTCAACTGGCAAGA
AATTCCCGGAGCTGCTTTGATTGGCCAGCTGAAGGACGGCGACCCCTCCT
TGGCCCCGCTCCAGCTCGACGACAAGCCCTCCGTCCTAATCGACTACCAT
CGAGTCGGCGGCTCGTACGACGAGCTCCGCTTGGTGAACAGTAAAGAACG
AATCTATCTCGGGCGAGGCCTGGATTGGCTCATGCCGGAGGTGCTTGCGT
ACTTTGTGATTCAGTTCTACGACACTCCTGAAAGAAAAGAATTGGCGCTT
GGCACGCGTTGCTATTACCAGGCACGCGAAAGTGCTCGCCTTGCAGCAGG
TGCCACGGAAGGATCGAATCGAGAGCAGATACTGCAAGCGACGCCAGAAA
ACTCGTGGAAATGGGAGGGGCTGGACACGGAGGGAGTTATGACAGCAGTG
ACGGTTGGCATGTCCGGCGGAGGAGACACAAGCTGTCCAGAGATGCTGGA
GCGATTGGGAGAGCGCCTTCGAGGGGCGGTAAGAAGTGCAGGAGTGAACA
AAGGCAACTAA
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Synonyms
Publications