jgi.p|Nanoce1779_2|581441, mRNA_2763 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|581441
Unique Name	mRNA_2763
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1411
Alignment location	scaffold_5:1124513..1125923 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	581527
Track	FilteredModels2
ProteinId	581441

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_5	supercontig	scaffold_5:1124513..1125923 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|581441	gene_2763	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|581441	mRNA_2763-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2763	CDS_2763	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_5:1124513..1125923+
coding sequence from alignment at scaffold_5:1124513..1125923+

mRNA sequence

>mRNA_2763 ID=mRNA_2763|Name=jgi.p|Nanoce1779_2|581441|organism=Nannochloropsis oceanica|type=mRNA|length=1411bp
ACAGACAAATGGACATCCTCGTCCTTTGCCAAATTTTTCTCTATGCCCTT
TTCCTTCCCACGCCTATCGCGGCTGACCTTGCCCTTCTTCCCACCCGGGA
CGCCGCCCGAGGCATGAGTTGGGAGCAGCTCGAGCACATTTTTAAGGAAA
GCACGATTGACGAAGGTATCCCTGAAGGTTATTCCTACGGCTATGCTCTT
GTCAACCCCACCTTTTCGGGTGCCATCCAGGTGGCTGCAGACATCTTTTG
GAAAGGCAAGCGCCTCGAAGTCAAGTCAGGTGAGAACTGCCACGGGCGAG
ACTGTGGGCAAATGGGGGTGGTGCTGAACTACCTTGGAGCAAGCAACCGT
GTCCAGTGGCAGGAAATGCCTGGTATTGCCTATATTGGTCAACTCAAGGA
CATCAAGTCTTCCCTCGAACCGCTACAGCTCGATGACAATCTCTCCATCA
TTGTCGATTATCAAAACGGTGGAGGCGATGAACTTCGCCTGGTCAACAGC
AAAGAGAGGATCTACCTCGGACGAGGGGTAGATTGGGTGAGCCCGCAAAT
CTATGCGTACTTTGTCCTTCAATTCTACGACGTGCCACAGAAAGTAGAGC
TATCATTCGGCACGGCTCATTATCACCAGGCACGAGAGAGGGCTTACCTT
GCAGCAGGGGCAACTCAGGGGCCGGACCCGATGCAGGTGGTGCAGGCGAT
ACCAGATACAGGACGGGAGCGGGAGGGGGGCTTGATAACTAGAAAATCAG
AAATGGTTGCAGCGATTGGACTGCTTAGTGGGGGTAAAACGACGACCATA
GTGGGATCGGAGGCGCGCTTTCGGGGGAGCGGCGGTAGAGGGGGTAAGAG
AGGGGACTAAACTCTGAGTGGAAATAATGCAGGGATATTGTGAGGGGGAA
AGCGGAGATTTCTAATCAGGAAACATTCGTATAATTACGATGACAGAGGG
TAAAGGACGACTGGAATTCGGAAGATATACACGTAAATAAGTATCATCAT
GGCAAGAAAGGAAAAGCCAGGGTCCACTCAGCGAGCTCTTTTTCTGACAT
AAATTCAGCGCCTCGTCGTCCATCCCTTGTGAAAACTTCATCCTTTCTGT
CTTACTCAGCACCATCACAATGGTGGGTCCGACGAGAAGGGAATGGCGAA
GGTGAAGTAGGGGGGAGGAGGGTGTTGTGAGGAAGAGCAGTCGCAGGATA
TGAGGGACGCGAAGCAACACTATTGTGCTGCTGATCCTTGGAGAAATTAA
GTCCATTATCACTAGCAGTCGTAAGATAGGTAGGGCATGGACGTGGAAAA
ATAAGTATACATCTATGCTCTCCGCTGCAACTGTAGCTGCTGCTGCTGCT
GCTGCTCCTACAGCTTCCGGTGTCATACCTTGCTGAGCAAGACCAAAAGT
CGAAAGGCCGG

protein sequence of jgi.p|Nanoce1779_2|581441

>mRNA_2763-protein ID=mRNA_2763-protein|Name=jgi.p|Nanoce1779_2|581441|organism=Nannochloropsis oceanica|type=polypeptide|length=284bp
MDILVLCQIFLYALFLPTPIAADLALLPTRDAARGMSWEQLEHIFKESTI
DEGIPEGYSYGYALVNPTFSGAIQVAADIFWKGKRLEVKSGENCHGRDCG
QMGVVLNYLGASNRVQWQEMPGIAYIGQLKDIKSSLEPLQLDDNLSIIVD
YQNGGGDELRLVNSKERIYLGRGVDWVSPQIYAYFVLQFYDVPQKVELSF
GTAHYHQARERAYLAAGATQGPDPMQVVQAIPDTGREREGGLITRKSEMV
AAIGLLSGGKTTTIVGSEARFRGSGGRGGKRGD*

mRNA from alignment at scaffold_5:1124513..1125923+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2763 ID=mRNA_2763|Name=jgi.p|Nanoce1779_2|581441|organism=Nannochloropsis oceanica|type=mRNA|length=1411bp|location=Sequence derived from alignment at scaffold_5:1124513..1125923+ (Nannochloropsis oceanica)
ACAGACAAATGGACATCCTCGTCCTTTGCCAAATTTTTCTCTATGCCCTT
TTCCTTCCCACGCCTATCGCGGCTGACCTTGCCCTTCTTCCCACCCGGGA
CGCCGCCCGAGGCATGAGTTGGGAGCAGCTCGAGCACATTTTTAAGGAAA
GCACGATTGACGAAGGTATCCCTGAAGGTTATTCCTACGGCTATGCTCTT
GTCAACCCCACCTTTTCGGGTGCCATCCAGGTGGCTGCAGACATCTTTTG
GAAAGGCAAGCGCCTCGAAGTCAAGTCAGGTGAGAACTGCCACGGGCGAG
ACTGTGGGCAAATGGGGGTGGTGCTGAACTACCTTGGAGCAAGCAACCGT
GTCCAGTGGCAGGAAATGCCTGGTATTGCCTATATTGGTCAACTCAAGGA
CATCAAGTCTTCCCTCGAACCGCTACAGCTCGATGACAATCTCTCCATCA
TTGTCGATTATCAAAACGGTGGAGGCGATGAACTTCGCCTGGTCAACAGC
AAAGAGAGGATCTACCTCGGACGAGGGGTAGATTGGGTGAGCCCGCAAAT
CTATGCGTACTTTGTCCTTCAATTCTACGACGTGCCACAGAAAGTAGAGC
TATCATTCGGCACGGCTCATTATCACCAGGCACGAGAGAGGGCTTACCTT
GCAGCAGGGGCAACTCAGGGGCCGGACCCGATGCAGGTGGTGCAGGCGAT
ACCAGATACAGGACGGGAGCGGGAGGGGGGCTTGATAACTAGAAAATCAG
AAATGGTTGCAGCGATTGGACTGCTTAGTGGGGGTAAAACGACGACCATA
GTGGGATCGGAGGCGCGCTTTCGGGGGAGCGGCGGTAGAGGGGGTAAGAG
AGGGGACTAAACTCTGAGTGGAAATAATGCAGGGATATTGTGAGGGGGAA
AGCGGAGATTTCTAATCAGGAAACATTCGTATAATTACGATGACAGAGGG
TAAAGGACGACTGGAATTCGGAAGATATACACGTAAATAAGTATCATCAT
GGCAAGAAAGGAAAAGCCAGGGTCCACTCAGCGAGCTCTTTTTCTGACAT
AAATTCAGCGCCTCGTCGTCCATCCCTTGTGAAAACTTCATCCTTTCTGT
CTTACTCAGCACCATCACAATGGTGGGTCCGACGAGAAGGGAATGGCGAA
GGTGAAGTAGGGGGGAGGAGGGTGTTGTGAGGAAGAGCAGTCGCAGGATA
TGAGGGACGCGAAGCAACACTATTGTGCTGCTGATCCTTGGAGAAATTAA
GTCCATTATCACTAGCAGTCGTAAGATAGGTAGGGCATGGACGTGGAAAA
ATAAGTATACATCTATGCTCTCCGCTGCAACTGTAGCTGCTGCTGCTGCT
GCTGCTCCTACAGCTTCCGGTGTCATACCTTGCTGAGCAAGACCAAAAGT
CGAAAGGCCGG

Coding sequence (CDS) from alignment at scaffold_5:1124513..1125923+

>mRNA_2763 ID=mRNA_2763|Name=jgi.p|Nanoce1779_2|581441|organism=Nannochloropsis oceanica|type=CDS|length=852bp|location=Sequence derived from alignment at scaffold_5:1124513..1125923+ (Nannochloropsis oceanica)
ATGGACATCCTCGTCCTTTGCCAAATTTTTCTCTATGCCCTTTTCCTTCC
CACGCCTATCGCGGCTGACCTTGCCCTTCTTCCCACCCGGGACGCCGCCC
GAGGCATGAGTTGGGAGCAGCTCGAGCACATTTTTAAGGAAAGCACGATT
GACGAAGGTATCCCTGAAGGTTATTCCTACGGCTATGCTCTTGTCAACCC
CACCTTTTCGGGTGCCATCCAGGTGGCTGCAGACATCTTTTGGAAAGGCA
AGCGCCTCGAAGTCAAGTCAGGTGAGAACTGCCACGGGCGAGACTGTGGG
CAAATGGGGGTGGTGCTGAACTACCTTGGAGCAAGCAACCGTGTCCAGTG
GCAGGAAATGCCTGGTATTGCCTATATTGGTCAACTCAAGGACATCAAGT
CTTCCCTCGAACCGCTACAGCTCGATGACAATCTCTCCATCATTGTCGAT
TATCAAAACGGTGGAGGCGATGAACTTCGCCTGGTCAACAGCAAAGAGAG
GATCTACCTCGGACGAGGGGTAGATTGGGTGAGCCCGCAAATCTATGCGT
ACTTTGTCCTTCAATTCTACGACGTGCCACAGAAAGTAGAGCTATCATTC
GGCACGGCTCATTATCACCAGGCACGAGAGAGGGCTTACCTTGCAGCAGG
GGCAACTCAGGGGCCGGACCCGATGCAGGTGGTGCAGGCGATACCAGATA
CAGGACGGGAGCGGGAGGGGGGCTTGATAACTAGAAAATCAGAAATGGTT
GCAGCGATTGGACTGCTTAGTGGGGGTAAAACGACGACCATAGTGGGATC
GGAGGCGCGCTTTCGGGGGAGCGGCGGTAGAGGGGGTAAGAGAGGGGACT
AA

Synonyms

Publications