jgi.p|Nanoce1779_2|581437, mRNA_2762 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|581437
Unique NamemRNA_2762
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length953
Alignment locationscaffold_5:1122809..1123887 +

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Properties
Property NameValue
TranscriptId581523
TrackFilteredModels2
ProteinId581437
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:1122809..1123887 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|581437gene_2762Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|581437mRNA_2762-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2762CDS_2762Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2762 ID=mRNA_2762|Name=jgi.p|Nanoce1779_2|581437|organism=Nannochloropsis oceanica|type=mRNA|length=953bp
CCCGACCACGTGCACGTTGGCGGCGTCTTCAGTAGTGGCGGTTGGGGAGG
AGGGCGAGGTGGAGGAGGAGGAAGAGGTGGGCCGACCCTCTTTCGTTTGT
TCCCGGAAACGCGCGAGGTTCTCGGTGCTCTTCACCGCACTAGAACTGTC
ACCCTAGCCATTGCCTCCCGCGCGCCCAACACCCAGGCAGCCGTCCAAAT
GCTGCAATTAATGAAACTGCATGCTTTCTTCCTCGCTTCTCCCTCACTCT
CCTCCTCCAACCCCTCTTTCTCTTCCCCCTCCTCCGTCGTGGTGTTGGAA
AAGGGGGACGAGGAAGGAAGGGAGGGAGAAGAAGGCAAAAGCAGAAGCGA
CGAGATGCTCATGCATATTTCCGCCGAGGGCTTTGGCAAGGCGAAGCACC
TCCGGGAGATTCTGAGGTATGGCACCCAGAGACAAGTCGGCCTTACTCCC
TTCTCTTATCGAAGCCTCTTCGACCCTTCCGTCTCATCCCACTCATTTTT
TTTTAACCCTCACAAAACAGGACCGCCAAAGCAGAGGCGCACCAAGTCTT
GTTTTTCGACGACCAAATGGGTAATCTGCAAGGTCCGTAGTGGCACTTGT
CTTTCTTTTCACTCCATGCTGACATACTTAACGTGACTTTCCGATGTATG
TATGTTTTTGTCCCTCCCCCTCATTCAACGCCTCATTCGCTGCCTCTTTG
TCACAGATGCCCGCAAGCTGGGTTGTTGTGCTCAAGTTGTCACATCGACT
GAGGGCCTGTCGTGGACTGCCCTAGAGAGTGGCTTGCGTGTGTACAGAGA
GCAATGGCGGGCTCGGAGGATGATGGCAAAGCATTTTGTGAAGAAGTAGG
TGGAAAGAGGAGGAAGCGATGGACAAAGATATGTAAAGAAACAATATATG
GGGCAAACAGAACGTACAAGAATCAATATGTACCCCTCGATGCTGCATTT
CTT
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protein sequence of jgi.p|Nanoce1779_2|581437

>mRNA_2762-protein ID=mRNA_2762-protein|Name=jgi.p|Nanoce1779_2|581437|organism=Nannochloropsis oceanica|type=polypeptide|length=146bp
MLQLMKLHAFFLASPSLSSSNPSFSSPSSVVVLEKGDEEGREGEEGKSRS
DEMLMHISAEGFGKAKHLREILRYGTQRQVGLTPFSYRSLFDPSVSSHSF
FFNPHKTGPPKQRRTKSCFSTTKWVICKVRSGTCLSFHSMLTYLT*
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mRNA from alignment at scaffold_5:1122809..1123887+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2762 ID=mRNA_2762|Name=jgi.p|Nanoce1779_2|581437|organism=Nannochloropsis oceanica|type=mRNA|length=1079bp|location=Sequence derived from alignment at scaffold_5:1122809..1123887+ (Nannochloropsis oceanica)
CCCGACCACGTGCACGTTGGCGGCGTCTTCAGTAGTGGCGGTTGGGGAGG
AGGGCGAGGTGGAGGAGGAGGAAGAGGTGGGCCGACCCTCTTTCGTTTGT
TCCCGGAAACGCGCGAGGTAGGTCTTGTCTCCCGATGTTCGTGTCTGGGG
TCCTCTTACTTTTTATCTCTTCCCCCTTCCTCCTCTTAATATCTTTCTTG
GTCCGTTTTCCCTGCTTCCCCTTCCCTCCTCCCATTTCCTTAGGTTCTCG
GTGCTCTTCACCGCACTAGAACTGTCACCCTAGCCATTGCCTCCCGCGCG
CCCAACACCCAGGCAGCCGTCCAAATGCTGCAATTAATGAAACTGCATGC
TTTCTTCCTCGCTTCTCCCTCACTCTCCTCCTCCAACCCCTCTTTCTCTT
CCCCCTCCTCCGTCGTGGTGTTGGAAAAGGGGGACGAGGAAGGAAGGGAG
GGAGAAGAAGGCAAAAGCAGAAGCGACGAGATGCTCATGCATATTTCCGC
CGAGGGCTTTGGCAAGGCGAAGCACCTCCGGGAGATTCTGAGGTATGGCA
CCCAGAGACAAGTCGGCCTTACTCCCTTCTCTTATCGAAGCCTCTTCGAC
CCTTCCGTCTCATCCCACTCATTTTTTTTTAACCCTCACAAAACAGGACC
GCCAAAGCAGAGGCGCACCAAGTCTTGTTTTTCGACGACCAAATGGGTAA
TCTGCAAGGTCCGTAGTGGCACTTGTCTTTCTTTTCACTCCATGCTGACA
TACTTAACGTGACTTTCCGATGTATGTATGTTTTTGTCCCTCCCCCTCAT
TCAACGCCTCATTCGCTGCCTCTTTGTCACAGATGCCCGCAAGCTGGGTT
GTTGTGCTCAAGTTGTCACATCGACTGAGGGCCTGTCGTGGACTGCCCTA
GAGAGTGGCTTGCGTGTGTACAGAGAGCAATGGCGGGCTCGGAGGATGAT
GGCAAAGCATTTTGTGAAGAAGTAGGTGGAAAGAGGAGGAAGCGATGGAC
AAAGATATGTAAAGAAACAATATATGGGGCAAACAGAACGTACAAGAATC
AATATGTACCCCTCGATGCTGCATTTCTT
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Coding sequence (CDS) from alignment at scaffold_5:1122809..1123887+

>mRNA_2762 ID=mRNA_2762|Name=jgi.p|Nanoce1779_2|581437|organism=Nannochloropsis oceanica|type=CDS|length=438bp|location=Sequence derived from alignment at scaffold_5:1122809..1123887+ (Nannochloropsis oceanica)
ATGCTGCAATTAATGAAACTGCATGCTTTCTTCCTCGCTTCTCCCTCACT
CTCCTCCTCCAACCCCTCTTTCTCTTCCCCCTCCTCCGTCGTGGTGTTGG
AAAAGGGGGACGAGGAAGGAAGGGAGGGAGAAGAAGGCAAAAGCAGAAGC
GACGAGATGCTCATGCATATTTCCGCCGAGGGCTTTGGCAAGGCGAAGCA
CCTCCGGGAGATTCTGAGGTATGGCACCCAGAGACAAGTCGGCCTTACTC
CCTTCTCTTATCGAAGCCTCTTCGACCCTTCCGTCTCATCCCACTCATTT
TTTTTTAACCCTCACAAAACAGGACCGCCAAAGCAGAGGCGCACCAAGTC
TTGTTTTTCGACGACCAAATGGGTAATCTGCAAGGTCCGTAGTGGCACTT
GTCTTTCTTTTCACTCCATGCTGACATACTTAACGTGA
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Synonyms
Publications