jgi.p|Nanoce1779_2|581425, mRNA_2759 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|581425
Unique NamemRNA_2759
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length739
Alignment locationscaffold_5:1118763..1119670 -

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Properties
Property NameValue
TranscriptId581511
TrackFilteredModels2
ProteinId581425
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:1118763..1119670 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|581425gene_2759Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|581425mRNA_2759-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2759CDS_2759Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2759 ID=mRNA_2759|Name=jgi.p|Nanoce1779_2|581425|organism=Nannochloropsis oceanica|type=mRNA|length=739bp
AAGTACCAACTGAGTCCATGCAAGTGAAGGGTGGGGAGGGACATGAAGGA
GGTGGCAAGGCGGGGAAAGATTCAAAACGTAGATGTTTTGTCGTCTCGCT
TCGAGAGCAGAAAAGGGCGAACTCCCTGCTTGCTGCTTCTTCGCTTCCAT
GCCGCCTCAAGCAAGCAACACACCTACACGCATCTACTTATGGACACTCA
CGCCCTCCGTCTCCATTCTCCCTCTCACTAGGCCATCACTAGTCGGGACA
AGCAACAGACCACCATGATGGACCCTACAATGATGCAGGCTCAGATGGCT
GCCCCTGCTCCCAGCATCGAGTCTGCTGACCTCGCCAGCCGCTCGCAATT
GTCCATGCCTGCCCTTACACACAACAACCAGGTTGTGGAGCACGTCCGAG
GGTTGATGTCCATTTTTGCCGGGGCAGCGGCGGGCGTGTTGGGGGCAACG
GGCATCGTGCAGGGCGCGCTGGCCTTTCTCGTCTTCTACCTCCTCACGTC
CCTGGGCCTGCTATTCAAAATGAAATTGACGGGAGACATCTCCACGTATT
TTCCTACCAAATGGTACGCATTTTTGCTGGCTGGCGTGGCGAATCATGTC
TTGTCGTTTTTACTGTTCTGGACCATGGGTTACACTCTAATCCATATTTA
CTAGGAGGGAGAGGGAAGGGACCCGAGGGGATGGTTGAAATGGCACAAAC
AAAATGAATCAAATGCAATTCAAACGACGTATATCGAGC
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protein sequence of jgi.p|Nanoce1779_2|581425

>mRNA_2759-protein ID=mRNA_2759-protein|Name=jgi.p|Nanoce1779_2|581425|organism=Nannochloropsis oceanica|type=polypeptide|length=130bp
MMDPTMMQAQMAAPAPSIESADLASRSQLSMPALTHNNQVVEHVRGLMSI
FAGAAAGVLGATGIVQGALAFLVFYLLTSLGLLFKMKLTGDISTYFPTKW
YAFLLAGVANHVLSFLLFWTMGYTLIHIY*
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mRNA from alignment at scaffold_5:1118763..1119670-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2759 ID=mRNA_2759|Name=jgi.p|Nanoce1779_2|581425|organism=Nannochloropsis oceanica|type=mRNA|length=908bp|location=Sequence derived from alignment at scaffold_5:1118763..1119670- (Nannochloropsis oceanica)
AAGTACCAACTGAGTCCATGCAAGTGAAGGGTGGGGAGGGACATGAAGGA
GGTGGCAAGGCGGGGAAAGATTCAAAACGTAGATGTTTTGTCGTCTCGCT
TCGAGAGCAGAAAAGGGCGAACTCCCTGCTTGCTGCTTCTTCGCTTCCAT
GCCGCCTCAAGCAAGCAACACACCTACACGCATCTACTTATGGACACTCA
CGCCCTCCGTCTCCATTCTCCCTCTCACTAGGCCATCACTAGTCGGGACA
AGCAACAGACCACCATGATGGACCCTACAATGATGCAGGCTCAGATGGCT
GCCCCTGCTCCCAGCATCGAGTCTGCTGACCTCGCCAGCCGCTCGCAATT
GTCCATGCCTGCCCTTACACACAACAACCAGGTTGTGGAGCACGTCCGAG
GGTTGATGTCCATTTTTGCCGGGGCAGCGGCGGGCGTGTTGGGGGCAACG
GGCATCGTGCAGGTACGAGAATGAGGGAGGGGAGGACTGGAAAGAGGACA
CCTCGCATAAGGCAGAGGTCACCCTTGCATTTATCCGTCTCCCTGCCCAT
CTCCCGTGCACCTTCCTACTGCATCTGCCGTTCTCCATGATACCACTGAC
CTTGTCAACTCAACCCTCCCCAATCACACAGGGCGCGCTGGCCTTTCTCG
TCTTCTACCTCCTCACGTCCCTGGGCCTGCTATTCAAAATGAAATTGACG
GGAGACATCTCCACGTATTTTCCTACCAAATGGTACGCATTTTTGCTGGC
TGGCGTGGCGAATCATGTCTTGTCGTTTTTACTGTTCTGGACCATGGGTT
ACACTCTAATCCATATTTACTAGGAGGGAGAGGGAAGGGACCCGAGGGGA
TGGTTGAAATGGCACAAACAAAATGAATCAAATGCAATTCAAACGACGTA
TATCGAGC
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Coding sequence (CDS) from alignment at scaffold_5:1118763..1119670-

>mRNA_2759 ID=mRNA_2759|Name=jgi.p|Nanoce1779_2|581425|organism=Nannochloropsis oceanica|type=CDS|length=780bp|location=Sequence derived from alignment at scaffold_5:1118763..1119670- (Nannochloropsis oceanica)
GGCGCGCTGGCCTTTCTCGTCTTCTACCTCCTCACGTCCCTGGGCCTGCT
ATTCAAAATGAAATTGACGGGAGACATCTCCACGTATTTTCCTACCAAAT
GGTACGCATTTTTGCTGGCTGGCGTGGCGAATCATGTCTTGTCGTTTTTA
CTGTTCTGGACCATGGGTTACACTCTAATCCATATTTACTAGATGATGGA
CCCTACAATGATGCAGGCTCAGATGGCTGCCCCTGCTCCCAGCATCGAGT
CTGCTGACCTCGCCAGCCGCTCGCAATTGTCCATGCCTGCCCTTACACAC
AACAACCAGGTTGTGGAGCACGTCCGAGGGTTGATGTCCATTTTTGCCGG
GGCAGCGGCGGGCGTGTTGGGGGCAACGGGCATCGTGCAGGGCGCGCTGG
CCTTTCTCGTCTTCTACCTCCTCACGTCCCTGGGCCTGCTATTCAAAATG
AAATTGACGGGAGACATCTCCACGTATTTTCCTACCAAATGGTACGCATT
TTTGCTGGCTGGCGTGGCGAATCATGTCTTGTCGTTTTTACTGTTCTGGA
CCATGGGTTACACTCTAATCCATATTTACTAGATGATGGACCCTACAATG
ATGCAGGCTCAGATGGCTGCCCCTGCTCCCAGCATCGAGTCTGCTGACCT
CGCCAGCCGCTCGCAATTGTCCATGCCTGCCCTTACACACAACAACCAGG
TTGTGGAGCACGTCCGAGGGTTGATGTCCATTTTTGCCGGGGCAGCGGCG
GGCGTGTTGGGGGCAACGGGCATCGTGCAG
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Synonyms
Publications