jgi.p|Nanoce1779_2|637619, mRNA_2758 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|637619
Unique Name	mRNA_2758
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2496
Alignment location	scaffold_5:1116127..1118622 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	637705
Track	FilteredModels2
ProteinId	637619

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_5	supercontig	scaffold_5:1116127..1118622 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|637619	gene_2758	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|637619	mRNA_2758-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2758	CDS_2758	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_5:1116127..1118622+
coding sequence from alignment at scaffold_5:1116127..1118622+

mRNA sequence

>mRNA_2758 ID=mRNA_2758|Name=jgi.p|Nanoce1779_2|637619|organism=Nannochloropsis oceanica|type=mRNA|length=2496bp
ATGATCTATCCGTTCTACTTTGTATCCTTCAATATTCCCGAGCTAACCTT
TATCCAAGACCCCTGGCGGCTCCCCACCCGGTGGGAGCAGACAGACGCTT
TGCGCTCAGTTCTCCACCAAGGGGGGCGGGTGGCGCGGCCCTATACCTTG
TCCATTGAAGACAAGATCGTCCATCCTGACCCTGCTCGACGATGTCACGT
AGAATGGGATCCGAAGTCTCAGAAATTCTGTCTCAACGAGCAGTACATGC
AAGTCTTGGACCAGGCCTTGGACGTGGCAAGAGAAATGGGTATTCGATTA
ATCCTTCCGCTTATCGACCAGTGGACATGGGTGGGTGGAGTGGAAAGTAT
GGCGAGATGGCGTGGGTTTGTAGGCAAGGACTGCGCAAGGGCTTTTTGGG
AGGAAGATGTGTGCTTGCAAGATTGGGGCGAGGTGATCAGGGCGGTGGTG
GGGAGGAGGAATACAATAAATGGTGCATTGTACCGGGAGGACCCCACCAT
CCTCGCGTGGGAAACGGGAAATGAATTGGACTGTCCCTCTGCATGGACGA
TTCGCATGGCGAGGATCATCAAGGAGGCGGATGAATGCAGACATTTGGTG
ATTGATGGCCACCACGGCGTAGACCCGGGCGTGCTGGGCGAGGAATCGAT
TGACATTGTCTCCCGTCATTATTATCCTTCGGGTGATGGGAGCACTGCTG
ACTCCCCCATCCTCTCTTCCATCACCACATGCACCCTCCCTCCCTCATCC
TTCGTAGATGCCCTCTTCTCTGATCTCCACGCGTGCCAGGGCAAGAAGCC
TTTCTTCGTGGGTGAGTTTGGATTCGCCTCTCTCTCGTCCACGGCCTCTT
TCCTCTCCACCCTCGTTGCTCAAGCCCAAGCTGGACAAGGCGTCATTGGT
GCCTGCCTCTGGAGCCTTCGCTTCCGATCTTTTCGCGGTGGCTTCTACTT
TCACGAAGAGCCCTGGGGTTTCAATGTCTTTTGGGCCTACCACTGGCCCG
GCTTTCCTTCCGGCGACCGCTACGACGAAAGAGGGATGATGTCACTGCTG
CACACCTACGGCCATCTCTGCTTCTCCCATGACAGCGGCATAGGGCAAAA
TAGCAACAGCAAACCCTGTGTCTCTTTGCCTTCCATCCCTTTCTCACTTC
CTCTTCCCGTGCCTGCCCCACCACGTCTTTTGTCTGTGACAGCCCAAGGC
CTTCTCACCTTCCGGGGATCCACCAGCGCCCGTAGCTACGAGTTACATCG
CTGTCGCGATATAGAGAACGGAGGAGGAAGGGGGGAAAGACGGGGAGGGG
GGGACTGGATGGTGGTGGAAAGAGGGGTGATAGATTCTTGGGTTCCGGAG
CAAGGGCAGGTGTTGGACAAGAGCTTAATGCGCTCCCCGCCGTCAGATTT
CTTTTATCGCCTAGTGGCCGTGAATGAAACAGGGTGCTCCAAGCCTTCGG
GTGTGTTGCCGTTGCAGCTCCCGAGGGTAGGAGAGGGGGCAACACTGGCT
CCTACGGTGTATTACTTTATCGAAGAAACATCGCAGCATGTCATGCTGGT
GGGACGACGCAATGTACTACCTCCTTCGCTTTTATGGGGATCGGAGCATG
GGGAGGGTGAGGGGAAGGGGGAAGGAGGGGAGGAAGGCTGGTTGACGCGT
GATTTGACGAAATGTATGGGGTTTCCCCGCGCGGCTGAGGGAGGAAGGGT
GTGCGCGCTGGGTCCGGAAGAAGAGGGGTGGCTGGTGTATGGAGGGTGGG
ACGGGCACTTGGTCGAGGCGGACATTCAGAGCCGACGTGTCGTTAATCAC
CCACTCATTATTCGGGGTTCCCCCACTGTGTGGCGGGCGCCGACCTCAAA
GGCAAGTCCTGACTCACTTGCTCGGGCCTGGGTGCGAGACGCGGAGATGG
ACAGGCTGTTAATGTTGTCCTTTGACATCGTGCGCGAGAAAAACACCTTA
AAAGTAGAGGATGTCGCGTTCGACGGTCCAGAACTGCCAAGATTGGGCGG
CGACCCTGTGGCGGTGAGTGCCAGAGAGGTTTGCTATGTGGGACATGACC
AACGCTTATACCGAATAATGTTTTCGTTCGATGAGTCCTATTCACAAGAG
AAGGAAGGGAGGGGGGGAGATAAAAGGGTGTCGTTCAAGTACACATTGGT
TGACCACTCGGTCCGGTCGGGGATTCATGTTCGGAGGGGAGATGAGTTGC
AGATTTTGGGCTGTCAAAAAGTGATATATGTCAGTGCGGAGGGAAAGGGG
CACATAATTGAGGAATCGAGGGCGGATGGGACGAGCGAGGAGGCGTGGCT
TGTGACGGATCACACGGTACTACATGGGGCGTCGCCACCAGTGGTGGGGA
GTGTCCGGGTGTTTCCACACCCCGTGGTCCAGGTGTCGTTTCAGAGTGCA
GCCGACCGGCATTGGTATGAGTTATGGTGGGCGGGAGAGAGCTGGCGGGT
CAGTCGGGAGGTGGGTGGTGATGAGGTGGTAAAGCCTTGTCGTTAA

protein sequence of jgi.p|Nanoce1779_2|637619

>mRNA_2758-protein ID=mRNA_2758-protein|Name=jgi.p|Nanoce1779_2|637619|organism=Nannochloropsis oceanica|type=polypeptide|length=832bp
MIYPFYFVSFNIPELTFIQDPWRLPTRWEQTDALRSVLHQGGRVARPYTL
SIEDKIVHPDPARRCHVEWDPKSQKFCLNEQYMQVLDQALDVAREMGIRL
ILPLIDQWTWVGGVESMARWRGFVGKDCARAFWEEDVCLQDWGEVIRAVV
GRRNTINGALYREDPTILAWETGNELDCPSAWTIRMARIIKEADECRHLV
IDGHHGVDPGVLGEESIDIVSRHYYPSGDGSTADSPILSSITTCTLPPSS
FVDALFSDLHACQGKKPFFVGEFGFASLSSTASFLSTLVAQAQAGQGVIG
ACLWSLRFRSFRGGFYFHEEPWGFNVFWAYHWPGFPSGDRYDERGMMSLL
HTYGHLCFSHDSGIGQNSNSKPCVSLPSIPFSLPLPVPAPPRLLSVTAQG
LLTFRGSTSARSYELHRCRDIENGGGRGERRGGGDWMVVERGVIDSWVPE
QGQVLDKSLMRSPPSDFFYRLVAVNETGCSKPSGVLPLQLPRVGEGATLA
PTVYYFIEETSQHVMLVGRRNVLPPSLLWGSEHGEGEGKGEGGEEGWLTR
DLTKCMGFPRAAEGGRVCALGPEEEGWLVYGGWDGHLVEADIQSRRVVNH
PLIIRGSPTVWRAPTSKASPDSLARAWVRDAEMDRLLMLSFDIVREKNTL
KVEDVAFDGPELPRLGGDPVAVSAREVCYVGHDQRLYRIMFSFDESYSQE
KEGRGGDKRVSFKYTLVDHSVRSGIHVRRGDELQILGCQKVIYVSAEGKG
HIIEESRADGTSEEAWLVTDHTVLHGASPPVVGSVRVFPHPVVQVSFQSA
ADRHWYELWWAGESWRVSREVGGDEVVKPCR*

mRNA from alignment at scaffold_5:1116127..1118622+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2758 ID=mRNA_2758|Name=jgi.p|Nanoce1779_2|637619|organism=Nannochloropsis oceanica|type=mRNA|length=2496bp|location=Sequence derived from alignment at scaffold_5:1116127..1118622+ (Nannochloropsis oceanica)
ATGATCTATCCGTTCTACTTTGTATCCTTCAATATTCCCGAGCTAACCTT
TATCCAAGACCCCTGGCGGCTCCCCACCCGGTGGGAGCAGACAGACGCTT
TGCGCTCAGTTCTCCACCAAGGGGGGCGGGTGGCGCGGCCCTATACCTTG
TCCATTGAAGACAAGATCGTCCATCCTGACCCTGCTCGACGATGTCACGT
AGAATGGGATCCGAAGTCTCAGAAATTCTGTCTCAACGAGCAGTACATGC
AAGTCTTGGACCAGGCCTTGGACGTGGCAAGAGAAATGGGTATTCGATTA
ATCCTTCCGCTTATCGACCAGTGGACATGGGTGGGTGGAGTGGAAAGTAT
GGCGAGATGGCGTGGGTTTGTAGGCAAGGACTGCGCAAGGGCTTTTTGGG
AGGAAGATGTGTGCTTGCAAGATTGGGGCGAGGTGATCAGGGCGGTGGTG
GGGAGGAGGAATACAATAAATGGTGCATTGTACCGGGAGGACCCCACCAT
CCTCGCGTGGGAAACGGGAAATGAATTGGACTGTCCCTCTGCATGGACGA
TTCGCATGGCGAGGATCATCAAGGAGGCGGATGAATGCAGACATTTGGTG
ATTGATGGCCACCACGGCGTAGACCCGGGCGTGCTGGGCGAGGAATCGAT
TGACATTGTCTCCCGTCATTATTATCCTTCGGGTGATGGGAGCACTGCTG
ACTCCCCCATCCTCTCTTCCATCACCACATGCACCCTCCCTCCCTCATCC
TTCGTAGATGCCCTCTTCTCTGATCTCCACGCGTGCCAGGGCAAGAAGCC
TTTCTTCGTGGGTGAGTTTGGATTCGCCTCTCTCTCGTCCACGGCCTCTT
TCCTCTCCACCCTCGTTGCTCAAGCCCAAGCTGGACAAGGCGTCATTGGT
GCCTGCCTCTGGAGCCTTCGCTTCCGATCTTTTCGCGGTGGCTTCTACTT
TCACGAAGAGCCCTGGGGTTTCAATGTCTTTTGGGCCTACCACTGGCCCG
GCTTTCCTTCCGGCGACCGCTACGACGAAAGAGGGATGATGTCACTGCTG
CACACCTACGGCCATCTCTGCTTCTCCCATGACAGCGGCATAGGGCAAAA
TAGCAACAGCAAACCCTGTGTCTCTTTGCCTTCCATCCCTTTCTCACTTC
CTCTTCCCGTGCCTGCCCCACCACGTCTTTTGTCTGTGACAGCCCAAGGC
CTTCTCACCTTCCGGGGATCCACCAGCGCCCGTAGCTACGAGTTACATCG
CTGTCGCGATATAGAGAACGGAGGAGGAAGGGGGGAAAGACGGGGAGGGG
GGGACTGGATGGTGGTGGAAAGAGGGGTGATAGATTCTTGGGTTCCGGAG
CAAGGGCAGGTGTTGGACAAGAGCTTAATGCGCTCCCCGCCGTCAGATTT
CTTTTATCGCCTAGTGGCCGTGAATGAAACAGGGTGCTCCAAGCCTTCGG
GTGTGTTGCCGTTGCAGCTCCCGAGGGTAGGAGAGGGGGCAACACTGGCT
CCTACGGTGTATTACTTTATCGAAGAAACATCGCAGCATGTCATGCTGGT
GGGACGACGCAATGTACTACCTCCTTCGCTTTTATGGGGATCGGAGCATG
GGGAGGGTGAGGGGAAGGGGGAAGGAGGGGAGGAAGGCTGGTTGACGCGT
GATTTGACGAAATGTATGGGGTTTCCCCGCGCGGCTGAGGGAGGAAGGGT
GTGCGCGCTGGGTCCGGAAGAAGAGGGGTGGCTGGTGTATGGAGGGTGGG
ACGGGCACTTGGTCGAGGCGGACATTCAGAGCCGACGTGTCGTTAATCAC
CCACTCATTATTCGGGGTTCCCCCACTGTGTGGCGGGCGCCGACCTCAAA
GGCAAGTCCTGACTCACTTGCTCGGGCCTGGGTGCGAGACGCGGAGATGG
ACAGGCTGTTAATGTTGTCCTTTGACATCGTGCGCGAGAAAAACACCTTA
AAAGTAGAGGATGTCGCGTTCGACGGTCCAGAACTGCCAAGATTGGGCGG
CGACCCTGTGGCGGTGAGTGCCAGAGAGGTTTGCTATGTGGGACATGACC
AACGCTTATACCGAATAATGTTTTCGTTCGATGAGTCCTATTCACAAGAG
AAGGAAGGGAGGGGGGGAGATAAAAGGGTGTCGTTCAAGTACACATTGGT
TGACCACTCGGTCCGGTCGGGGATTCATGTTCGGAGGGGAGATGAGTTGC
AGATTTTGGGCTGTCAAAAAGTGATATATGTCAGTGCGGAGGGAAAGGGG
CACATAATTGAGGAATCGAGGGCGGATGGGACGAGCGAGGAGGCGTGGCT
TGTGACGGATCACACGGTACTACATGGGGCGTCGCCACCAGTGGTGGGGA
GTGTCCGGGTGTTTCCACACCCCGTGGTCCAGGTGTCGTTTCAGAGTGCA
GCCGACCGGCATTGGTATGAGTTATGGTGGGCGGGAGAGAGCTGGCGGGT
CAGTCGGGAGGTGGGTGGTGATGAGGTGGTAAAGCCTTGTCGTTAA

Coding sequence (CDS) from alignment at scaffold_5:1116127..1118622+

>mRNA_2758 ID=mRNA_2758|Name=jgi.p|Nanoce1779_2|637619|organism=Nannochloropsis oceanica|type=CDS|length=2496bp|location=Sequence derived from alignment at scaffold_5:1116127..1118622+ (Nannochloropsis oceanica)
ATGATCTATCCGTTCTACTTTGTATCCTTCAATATTCCCGAGCTAACCTT
TATCCAAGACCCCTGGCGGCTCCCCACCCGGTGGGAGCAGACAGACGCTT
TGCGCTCAGTTCTCCACCAAGGGGGGCGGGTGGCGCGGCCCTATACCTTG
TCCATTGAAGACAAGATCGTCCATCCTGACCCTGCTCGACGATGTCACGT
AGAATGGGATCCGAAGTCTCAGAAATTCTGTCTCAACGAGCAGTACATGC
AAGTCTTGGACCAGGCCTTGGACGTGGCAAGAGAAATGGGTATTCGATTA
ATCCTTCCGCTTATCGACCAGTGGACATGGGTGGGTGGAGTGGAAAGTAT
GGCGAGATGGCGTGGGTTTGTAGGCAAGGACTGCGCAAGGGCTTTTTGGG
AGGAAGATGTGTGCTTGCAAGATTGGGGCGAGGTGATCAGGGCGGTGGTG
GGGAGGAGGAATACAATAAATGGTGCATTGTACCGGGAGGACCCCACCAT
CCTCGCGTGGGAAACGGGAAATGAATTGGACTGTCCCTCTGCATGGACGA
TTCGCATGGCGAGGATCATCAAGGAGGCGGATGAATGCAGACATTTGGTG
ATTGATGGCCACCACGGCGTAGACCCGGGCGTGCTGGGCGAGGAATCGAT
TGACATTGTCTCCCGTCATTATTATCCTTCGGGTGATGGGAGCACTGCTG
ACTCCCCCATCCTCTCTTCCATCACCACATGCACCCTCCCTCCCTCATCC
TTCGTAGATGCCCTCTTCTCTGATCTCCACGCGTGCCAGGGCAAGAAGCC
TTTCTTCGTGGGTGAGTTTGGATTCGCCTCTCTCTCGTCCACGGCCTCTT
TCCTCTCCACCCTCGTTGCTCAAGCCCAAGCTGGACAAGGCGTCATTGGT
GCCTGCCTCTGGAGCCTTCGCTTCCGATCTTTTCGCGGTGGCTTCTACTT
TCACGAAGAGCCCTGGGGTTTCAATGTCTTTTGGGCCTACCACTGGCCCG
GCTTTCCTTCCGGCGACCGCTACGACGAAAGAGGGATGATGTCACTGCTG
CACACCTACGGCCATCTCTGCTTCTCCCATGACAGCGGCATAGGGCAAAA
TAGCAACAGCAAACCCTGTGTCTCTTTGCCTTCCATCCCTTTCTCACTTC
CTCTTCCCGTGCCTGCCCCACCACGTCTTTTGTCTGTGACAGCCCAAGGC
CTTCTCACCTTCCGGGGATCCACCAGCGCCCGTAGCTACGAGTTACATCG
CTGTCGCGATATAGAGAACGGAGGAGGAAGGGGGGAAAGACGGGGAGGGG
GGGACTGGATGGTGGTGGAAAGAGGGGTGATAGATTCTTGGGTTCCGGAG
CAAGGGCAGGTGTTGGACAAGAGCTTAATGCGCTCCCCGCCGTCAGATTT
CTTTTATCGCCTAGTGGCCGTGAATGAAACAGGGTGCTCCAAGCCTTCGG
GTGTGTTGCCGTTGCAGCTCCCGAGGGTAGGAGAGGGGGCAACACTGGCT
CCTACGGTGTATTACTTTATCGAAGAAACATCGCAGCATGTCATGCTGGT
GGGACGACGCAATGTACTACCTCCTTCGCTTTTATGGGGATCGGAGCATG
GGGAGGGTGAGGGGAAGGGGGAAGGAGGGGAGGAAGGCTGGTTGACGCGT
GATTTGACGAAATGTATGGGGTTTCCCCGCGCGGCTGAGGGAGGAAGGGT
GTGCGCGCTGGGTCCGGAAGAAGAGGGGTGGCTGGTGTATGGAGGGTGGG
ACGGGCACTTGGTCGAGGCGGACATTCAGAGCCGACGTGTCGTTAATCAC
CCACTCATTATTCGGGGTTCCCCCACTGTGTGGCGGGCGCCGACCTCAAA
GGCAAGTCCTGACTCACTTGCTCGGGCCTGGGTGCGAGACGCGGAGATGG
ACAGGCTGTTAATGTTGTCCTTTGACATCGTGCGCGAGAAAAACACCTTA
AAAGTAGAGGATGTCGCGTTCGACGGTCCAGAACTGCCAAGATTGGGCGG
CGACCCTGTGGCGGTGAGTGCCAGAGAGGTTTGCTATGTGGGACATGACC
AACGCTTATACCGAATAATGTTTTCGTTCGATGAGTCCTATTCACAAGAG
AAGGAAGGGAGGGGGGGAGATAAAAGGGTGTCGTTCAAGTACACATTGGT
TGACCACTCGGTCCGGTCGGGGATTCATGTTCGGAGGGGAGATGAGTTGC
AGATTTTGGGCTGTCAAAAAGTGATATATGTCAGTGCGGAGGGAAAGGGG
CACATAATTGAGGAATCGAGGGCGGATGGGACGAGCGAGGAGGCGTGGCT
TGTGACGGATCACACGGTACTACATGGGGCGTCGCCACCAGTGGTGGGGA
GTGTCCGGGTGTTTCCACACCCCGTGGTCCAGGTGTCGTTTCAGAGTGCA
GCCGACCGGCATTGGTATGAGTTATGGTGGGCGGGAGAGAGCTGGCGGGT
CAGTCGGGAGGTGGGTGGTGATGAGGTGGTAAAGCCTTGTCGTTAA

Synonyms

Publications