jgi.p|Nanoce1779_2|581418, mRNA_2757 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|581418
Unique NamemRNA_2757
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1164
Alignment locationscaffold_5:1114130..1115746 -

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Properties
Property NameValue
TranscriptId581504
TrackFilteredModels2
ProteinId581418
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:1114130..1115746 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|581418gene_2757Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|581418mRNA_2757-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2757CDS_2757Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2757 ID=mRNA_2757|Name=jgi.p|Nanoce1779_2|581418|organism=Nannochloropsis oceanica|type=mRNA|length=1164bp
CCGATGTTTTTGCGCTCGTCAAGAGGACTTCATTACTCACCCTCATATCG
GTCGTTTTTGAGTTCGCTCGCGTTGCTTCAAACTCCAGCGACGCACGGCA
AACGCCGCTAAGGTGCCTGTCTTTCTTAACATATTTCCAAACAAGCCACC
CCACCCATTCGCAGACGACAGGCACAGCAAACTAGAAATTATGCCGCTGT
TAAACTTCCTGTGCGCACTGAGTCCCATTAAAGCGGCCTCCTACCTAAAC
CAGACTCCCGCCACCACAGCTCCCCTTGACACTACAGCAGGACCCTCACC
CACCAGCAACGGCGGTGAGAAAAAGCAAGAGGGAGGAAAGTCCACCTGGG
AAAATGCATGGGAGATGAAGCGCATGCTCAAGGTCACGGAGGAGCTGATG
GAGAAAGACGAGATTGCTCGAGGCGAGAATGTACACAAGCAGCGGGAGGC
AATGAAGAAGGAACAAACCCAGCGCAAGAAACAGGACAAAGCGGAGGCCC
TTCGAACTCAGCAAGAAGCCTTTCGTAATGTCAAGAAACAGCGAGATATA
GAGCAAGAAGCCGCCCGGGCCGACATCCGCGAAGAATACCGTCGAGCCAT
GACCACCAAGAAGGAAGCTGAAGCCGAGCAAAGGGCCACCCGACAACGGG
AACGCGAAGAGAAACGACGTGCGCTTCTCGAGGAACACCGCCGGAAGCAA
GAGGAAGAGGACGGGATGAAGGCCACGAAGCGGGCAGAAGATCAGGCACG
GCTCGCAAAACGACAGGCCGAGGTGGCGGCGGCGGAGAAGGAGAGGATAA
AGAAGGTGCATATGCTGCGGGTATCCTTAGAGGCCCAGAAAGAGAAGAGG
CGGGCTTCCCTGTACACTCCACCAGCGGGGATGGCCAAGGGGAAGGGAGG
CGGACGGCAGGAAGGATGAGAAGGGAGGGAAGGAAGGAGGGGAGAAGGGT
GGGCCATACATGTGTTTTGAATATATATTTTCCACTGTATTTTTCATTTA
CAAAAGGGATCATAAGCAGTGGCTTGACTCGGTGGAAGTAGGAAAGATGA
TGGAGAGGCACTACGGGGAAGGAAGTCACTACCTCGTCACTGGCAGACCC
AGGCAGGTCAAGAGCCCAAAAGAAGAAGGAAACGATTAATTGAACGAAAG
GAAAAATAGAGCCG
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protein sequence of jgi.p|Nanoce1779_2|581418

>mRNA_2757-protein ID=mRNA_2757-protein|Name=jgi.p|Nanoce1779_2|581418|organism=Nannochloropsis oceanica|type=polypeptide|length=243bp
MPLLNFLCALSPIKAASYLNQTPATTAPLDTTAGPSPTSNGGEKKQEGGK
STWENAWEMKRMLKVTEELMEKDEIARGENVHKQREAMKKEQTQRKKQDK
AEALRTQQEAFRNVKKQRDIEQEAARADIREEYRRAMTTKKEAEAEQRAT
RQREREEKRRALLEEHRRKQEEEDGMKATKRAEDQARLAKRQAEVAAAEK
ERIKKVHMLRVSLEAQKEKRRASLYTPPAGMAKGKGGGRQEG*
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mRNA from alignment at scaffold_5:1114130..1115746-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2757 ID=mRNA_2757|Name=jgi.p|Nanoce1779_2|581418|organism=Nannochloropsis oceanica|type=mRNA|length=1617bp|location=Sequence derived from alignment at scaffold_5:1114130..1115746- (Nannochloropsis oceanica)
CCGATGTTTTTGCGCTCGTCAAGAGGACTTCATTACTCACCCTCATATCG
GTCGTTTTTGAGTTCGCTCGCGTTGCTTCAAACTCCAGCGACGCACGGCA
AACGCCGCTAAGGTGCCTGTCTTTCTTAACATATTTCCAAACAAGCCACC
CCACCCATTCGCAGACGACAGGCACAGCAAACTAGAAATTATGCCGCTGT
TAAACTTCCTGTGCGCACTGAGTCCCATTAAAGCGGCCTCCTACCTAAAC
CAGACTCCCGCCACCACAGCTCCCCTTGACACTACAGCAGGTAAGCGAGG
CGTATTCTTCTTGCCACCCTTTATTCACAAGGCCACCAACAAATTCTGCA
AACCCTTTACTGCAACAACCACAAAGGACCCTCACCCACCAGCAACGGCG
GTGAGAAAAAGCAAGAGGGAGGAAAGTCCACCTGGGAAAATGCATGGGAG
ATGAAGCGCATGCTCAAGGTCACGGTGAGTTGTGTATGGTTTGCTGTGTT
GAGTCAGTATGCCAGCTTGTCCTATGTAGGGATGGCTTTCCACGTGATAT
CAGCAAAGCTTGTCCCTGGCACCAGAGAGGCGTAGGCATAGGGTGCCATA
GCTGAGGTCTTAGGGAGTGAATGGCCCATCCTACCAGGCATATTCACGCC
TTGTATCCTCCCCTCTGAAACCTCACAACGCAGGAGGAGCTGATGGAGAA
AGACGAGATTGCTCGAGGCGAGAATGTACACAAGCAGCGGGAGGCAATGA
AGAAGGAACAAACCCAGCGCAAGAAACAGGACAAAGCGGAGGCCCTTCGA
ACTCAGCAAGAAGCCTTTCGTAATGTCAAGAAACAGCGAGATATAGAGGT
GAGTGATTGGGGAACAATGAAAATATACTCAAAGTCTGGTCGTTCGATTG
TCCGTTGAGCGTCCCTTTGGCCGCTTTTGCACTGCTCACCTGGTCTCTCC
CATCTCCCTCCCACACTTTTTCGCTCTCCCACACCCTTTCCCCCAACCAC
ACAAAGCAAGAAGCCGCCCGGGCCGACATCCGCGAAGAATACCGTCGAGC
CATGACCACCAAGAAGGAAGCTGAAGCCGAGCAAAGGGCCACCCGACAAC
GGGAACGCGAAGAGAAACGACGTGCGCTTCTCGAGGAACACCGCCGGAAG
CAAGAGGAAGAGGACGGGATGAAGGCCACGAAGCGGGCAGAAGATCAGGC
ACGGCTCGCAAAACGACAGGCCGAGGTGGCGGCGGCGGAGAAGGAGAGGA
TAAAGAAGGTGCATATGCTGCGGGTATCCTTAGAGGCCCAGAAAGAGAAG
AGGCGGGCTTCCCTGTACACTCCACCAGCGGGGATGGCCAAGGGGAAGGG
AGGCGGACGGCAGGAAGGATGAGAAGGGAGGGAAGGAAGGAGGGGAGAAG
GGTGGGCCATACATGTGTTTTGAATATATATTTTCCACTGTATTTTTCAT
TTACAAAAGGGATCATAAGCAGTGGCTTGACTCGGTGGAAGTAGGAAAGA
TGATGGAGAGGCACTACGGGGAAGGAAGTCACTACCTCGTCACTGGCAGA
CCCAGGCAGGTCAAGAGCCCAAAAGAAGAAGGAAACGATTAATTGAACGA
AAGGAAAAATAGAGCCG
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Coding sequence (CDS) from alignment at scaffold_5:1114130..1115746-

>mRNA_2757 ID=mRNA_2757|Name=jgi.p|Nanoce1779_2|581418|organism=Nannochloropsis oceanica|type=CDS|length=2916bp|location=Sequence derived from alignment at scaffold_5:1114130..1115746- (Nannochloropsis oceanica)
CAAGAAGCCGCCCGGGCCGACATCCGCGAAGAATACCGTCGAGCCATGAC
CACCAAGAAGGAAGCTGAAGCCGAGCAAAGGGCCACCCGACAACGGGAAC
GCGAAGAGAAACGACGTGCGCTTCTCGAGGAACACCGCCGGAAGCAAGAG
GAAGAGGACGGGATGAAGGCCACGAAGCGGGCAGAAGATCAGGCACGGCT
CGCAAAACGACAGGCCGAGGTGGCGGCGGCGGAGAAGGAGAGGATAAAGA
AGGTGCATATGCTGCGGGTATCCTTAGAGGCCCAGAAAGAGAAGAGGCGG
GCTTCCCTGTACACTCCACCAGCGGGGATGGCCAAGGGGAAGGGAGGCGG
ACGGCAGGAAGGATGAGAGGAGCTGATGGAGAAAGACGAGATTGCTCGAG
GCGAGAATGTACACAAGCAGCGGGAGGCAATGAAGAAGGAACAAACCCAG
CGCAAGAAACAGGACAAAGCGGAGGCCCTTCGAACTCAGCAAGAAGCCTT
TCGTAATGTCAAGAAACAGCGAGATATAGAGGACCCTCACCCACCAGCAA
CGGCGGTGAGAAAAAGCAAGAGGGAGGAAAGTCCACCTGGGAAAATGCAT
GGGAGATGAAGCGCATGCTCAAGGTCACGATGCCGCTGTTAAACTTCCTG
TGCGCACTGAGTCCCATTAAAGCGGCCTCCTACCTAAACCAGACTCCCGC
CACCACAGCTCCCCTTGACACTACAGCAGCAAGAAGCCGCCCGGGCCGAC
ATCCGCGAAGAATACCGTCGAGCCATGACCACCAAGAAGGAAGCTGAAGC
CGAGCAAAGGGCCACCCGACAACGGGAACGCGAAGAGAAACGACGTGCGC
TTCTCGAGGAACACCGCCGGAAGCAAGAGGAAGAGGACGGGATGAAGGCC
ACGAAGCGGGCAGAAGATCAGGCACGGCTCGCAAAACGACAGGCCGAGGT
GGCGGCGGCGGAGAAGGAGAGGATAAAGAAGGTGCATATGCTGCGGGTAT
CCTTAGAGGCCCAGAAAGAGAAGAGGCGGGCTTCCCTGTACACTCCACCA
GCGGGGATGGCCAAGGGGAAGGGAGGCGGACGGCAGGAAGGATGAGAGGA
GCTGATGGAGAAAGACGAGATTGCTCGAGGCGAGAATGTACACAAGCAGC
GGGAGGCAATGAAGAAGGAACAAACCCAGCGCAAGAAACAGGACAAAGCG
GAGGCCCTTCGAACTCAGCAAGAAGCCTTTCGTAATGTCAAGAAACAGCG
AGATATAGAGGACCCTCACCCACCAGCAACGGCGGTGAGAAAAAGCAAGA
GGGAGGAAAGTCCACCTGGGAAAATGCATGGGAGATGAAGCGCATGCTCA
AGGTCACGATGCCGCTGTTAAACTTCCTGTGCGCACTGAGTCCCATTAAA
GCGGCCTCCTACCTAAACCAGACTCCCGCCACCACAGCTCCCCTTGACAC
TACAGCAGCAAGAAGCCGCCCGGGCCGACATCCGCGAAGAATACCGTCGA
GCCATGACCACCAAGAAGGAAGCTGAAGCCGAGCAAAGGGCCACCCGACA
ACGGGAACGCGAAGAGAAACGACGTGCGCTTCTCGAGGAACACCGCCGGA
AGCAAGAGGAAGAGGACGGGATGAAGGCCACGAAGCGGGCAGAAGATCAG
GCACGGCTCGCAAAACGACAGGCCGAGGTGGCGGCGGCGGAGAAGGAGAG
GATAAAGAAGGTGCATATGCTGCGGGTATCCTTAGAGGCCCAGAAAGAGA
AGAGGCGGGCTTCCCTGTACACTCCACCAGCGGGGATGGCCAAGGGGAAG
GGAGGCGGACGGCAGGAAGGATGAGAGGAGCTGATGGAGAAAGACGAGAT
TGCTCGAGGCGAGAATGTACACAAGCAGCGGGAGGCAATGAAGAAGGAAC
AAACCCAGCGCAAGAAACAGGACAAAGCGGAGGCCCTTCGAACTCAGCAA
GAAGCCTTTCGTAATGTCAAGAAACAGCGAGATATAGAGGACCCTCACCC
ACCAGCAACGGCGGTGAGAAAAAGCAAGAGGGAGGAAAGTCCACCTGGGA
AAATGCATGGGAGATGAAGCGCATGCTCAAGGTCACGATGCCGCTGTTAA
ACTTCCTGTGCGCACTGAGTCCCATTAAAGCGGCCTCCTACCTAAACCAG
ACTCCCGCCACCACAGCTCCCCTTGACACTACAGCAGCAAGAAGCCGCCC
GGGCCGACATCCGCGAAGAATACCGTCGAGCCATGACCACCAAGAAGGAA
GCTGAAGCCGAGCAAAGGGCCACCCGACAACGGGAACGCGAAGAGAAACG
ACGTGCGCTTCTCGAGGAACACCGCCGGAAGCAAGAGGAAGAGGACGGGA
TGAAGGCCACGAAGCGGGCAGAAGATCAGGCACGGCTCGCAAAACGACAG
GCCGAGGTGGCGGCGGCGGAGAAGGAGAGGATAAAGAAGGTGCATATGCT
GCGGGTATCCTTAGAGGCCCAGAAAGAGAAGAGGCGGGCTTCCCTGTACA
CTCCACCAGCGGGGATGGCCAAGGGGAAGGGAGGCGGACGGCAGGAAGGA
TGAGAGGAGCTGATGGAGAAAGACGAGATTGCTCGAGGCGAGAATGTACA
CAAGCAGCGGGAGGCAATGAAGAAGGAACAAACCCAGCGCAAGAAACAGG
ACAAAGCGGAGGCCCTTCGAACTCAGCAAGAAGCCTTTCGTAATGTCAAG
AAACAGCGAGATATAGAGGACCCTCACCCACCAGCAACGGCGGTGAGAAA
AAGCAAGAGGGAGGAAAGTCCACCTGGGAAAATGCATGGGAGATGAAGCG
CATGCTCAAGGTCACGATGCCGCTGTTAAACTTCCTGTGCGCACTGAGTC
CCATTAAAGCGGCCTCCTACCTAAACCAGACTCCCGCCACCACAGCTCCC
CTTGACACTACAGCAG
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Synonyms
Publications