jgi.p|Nanoce1779_2|539120, mRNA_2753 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|539120
Unique NamemRNA_2753
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1483
Alignment locationscaffold_5:1100729..1102268 -

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Properties
Property NameValue
TranscriptId539206
TrackFilteredModels2
ProteinId539120
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:1100729..1102268 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|539120gene_2753Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|539120mRNA_2753-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2753CDS_2753Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2753 ID=mRNA_2753|Name=jgi.p|Nanoce1779_2|539120|organism=Nannochloropsis oceanica|type=mRNA|length=1483bp
AGAGGACGACATGAAGTTGGTCTGCCTGGGCGATATGCATTCCTTTTCCT
TTCCAAAACCTCTTTCCCAAACCAAAATCCCTTGACCTCTTGACACACCA
CAGGCACCAGCAGGGCAACGACGCCCTCCCACGGCATAGAGAATGCAGGG
GGAGCAAGACCCTGGAGCTTCGAGGGCCCCTGCGCGCAGGAATGAAGCCT
CGCGTCTCATTTCCTCCTCTCGGCTCCGTACACACATCAACCGCCTTGGC
AATCGTCTACTCAACGAACTCGGGGCCACAGGCAACAGCAATAGCGGCAT
CACCAATAACAGCAGCAGTGATAGAAGTAGTGGTAACAGCAGCAGCAGCA
GCAGCAGCAGCAGAGGTGGCAGCGTGGGTCCTTCCTCTCATCCGCCGCAG
CAGCATGACGCCCGTGACCCTCACCTCACCAACCCCGCCTCCCCCTCCTC
GGCCACCTCTCCCTTGCACCTTCCTCAGTCACTTTACTTGCACTCAAAAC
GACGCGTCCGCAAGCGTTATATGGATCAGCTTATCATGAACTACCTCGTA
ATCAAGGGTGACAAGCATGTGGCCGAGTGCTTGACCAGGGAGTCAGGGGC
AGTGCCGCCCGTGGACTTGAAAACGATTGAGGAACGCATGAATGTACGAA
AGGCCCTGATAGCAGGTGAGGTGGATGCAGCCATGGCGCATATCGCTAAA
TGTGACCCGAGGCTATTGGAGAGGGAGCAGGGACTGGCATTTACTTTAAA
GCTGCAGAAGCTCGTGGAGATGATTCGACGGCGGATGGAGCAGCGGGAGG
GAGGGATGGAGGGCGAGGGTGCAGACGACGACGAGGTTATTTTGTCGTAT
GCAAGAGAAGAGCTTGCGCCTTGGGGCGAGGCGGAGGAGGGGGGGGGAGG
AGGAAAGGGAGAGAATTTGCAAGCGTTGGAGGAGGCCATGACATTGCTTG
TCTTTGGCACGGCCGCCTTCGGAACAGGCGACTTGCTGGACCTTTCAAGA
CGGACAGCCACGGCAGACAGGGTGAATGCGGCGATTCTTCAAAGCCAAGG
CCAAGATTCCGAGCCTGTATTGCCCAGACTGTTGAGAAAACTGCGTGCGG
CGGAGGACGAGCTGGCATCAGAGATGATGTGTTGAGATTGAGGAAAGAGG
AAGGAACGAGGAATTGTTGTGTCGGAGAGGGAAGGGTGTGTCGTAGAAAG
AAAAAGGCTGTGTGTGTAAGTGTGTGCGTGGTGACAAGGAAAGGGAGGAT
GGCGGGTAGAAAGGGCGTGTCGGTGGCCGTTAGAGAGTGGACCATGGGCT
TGAGTCAAAACGAGGATGTGTACGTAGAATAAGTGTAGAGAGAACAAAGC
CTCAAATAAGAAAAGAAGAAAGCAGCGAGATATAGGGCTCAGAAGCAATT
GTGAGGTCACTGATGGACAAGACATCGGTCACGTTTCTTCCTAAGCACCA
CAGAGCTTGTTTCTGACACCCCAAACAAAATGC
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protein sequence of jgi.p|Nanoce1779_2|539120

>mRNA_2753-protein ID=mRNA_2753-protein|Name=jgi.p|Nanoce1779_2|539120|organism=Nannochloropsis oceanica|type=polypeptide|length=331bp
MQGEQDPGASRAPARRNEASRLISSSRLRTHINRLGNRLLNELGATGNSN
SGITNNSSSDRSSGNSSSSSSSSRGGSVGPSSHPPQQHDARDPHLTNPAS
PSSATSPLHLPQSLYLHSKRRVRKRYMDQLIMNYLVIKGDKHVAECLTRE
SGAVPPVDLKTIEERMNVRKALIAGEVDAAMAHIAKCDPRLLEREQGLAF
TLKLQKLVEMIRRRMEQREGGMEGEGADDDEVILSYAREELAPWGEAEEG
GGGGKGENLQALEEAMTLLVFGTAAFGTGDLLDLSRRTATADRVNAAILQ
SQGQDSEPVLPRLLRKLRAAEDELASEMMC*
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mRNA from alignment at scaffold_5:1100729..1102268-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2753 ID=mRNA_2753|Name=jgi.p|Nanoce1779_2|539120|organism=Nannochloropsis oceanica|type=mRNA|length=1540bp|location=Sequence derived from alignment at scaffold_5:1100729..1102268- (Nannochloropsis oceanica)
AGAGGACGACATGAAGTTGGTCTGCCTGGGCGATATGCATTCCTTTTCCT
TTCCAAAACCTCTTTCCCAAACCAAAATCCCTTGACCTCTTGACACACCA
CAGGCACCAGCAGGGCAACGACGCCCTCCCACGGCATAGAGAATGCAGGG
GGAGCAAGACCCTGGAGCTTCGAGGGCCCCTGCGCGCAGGAATGAAGCCT
CGCGTCTCATTTCCTCCTCTCGGCTCCGTACACACATCAACCGCCTTGGC
AATCGTCTACTCAACGAACTCGGGGCCACAGGCAACAGCAATAGCGGCAT
CACCAATAACAGCAGCAGTGATAGAAGTAGTGGTAACAGCAGCAGCAGCA
GCAGCAGCAGCAGAGGTGGCAGCGTGGGTCCTTCCTCTCATCCGCCGCAG
CAGCATGACGCCCGTGACCCTCACCTCACCAACCCCGCCTCCCCCTCCTC
GGCCACCTCTCCCTTGCACCTTCCTCAGTCACTTTACTTGCACTCAAAAC
GACGCGTCCGCAAGCGTTATATGGATCAGCTTATCATGAACTACCTCGTA
ATCAAGGGTGACAAGCATGTGGCCGAGTGCTTGACCAGGGAGTCAGGGGC
AGTGCCGCCCGTGGACTTGAAAACGATTGAGGAACGCATGAATGTACGAA
AGGCCCTGATAGCAGGTGAGGTGGATGCAGCCATGGCGCATATCGCTAAA
TGTGACCCGAGGCTATTGGAGAGGGAGCAGGGACTGGCATTTACTTTAAA
GCTGCAGAAGCTCGTGGAGATGATTCGACGGCGGATGGAGCAGCGGGAGG
GAGGGATGGAGGGCGAGGGTGCAGACGACGACGAGGTTATTTTGTCGTAT
GCAAGAGAAGAGCTTGCGCCTTGGGGCGAGGCGGAGGAGGGGGGGGGAGG
AGGAAAGGGAGAGAATTTGCAAGCGTTGGAGGAGGCCATGACATTGCTTG
TCTTTGGCACGGCCGCCTTCGGTGCAGCACCCGGCGCAAAAGGAGGAAAA
GAAGGAAGAAGGGGAGAAGAAGAACGAGGAACAGGCGACTTGCTGGACCT
TTCAAGACGGACAGCCACGGCAGACAGGGTGAATGCGGCGATTCTTCAAA
GCCAAGGCCAAGATTCCGAGCCTGTATTGCCCAGACTGTTGAGAAAACTG
CGTGCGGCGGAGGACGAGCTGGCATCAGAGATGATGTGTTGAGATTGAGG
AAAGAGGAAGGAACGAGGAATTGTTGTGTCGGAGAGGGAAGGGTGTGTCG
TAGAAAGAAAAAGGCTGTGTGTGTAAGTGTGTGCGTGGTGACAAGGAAAG
GGAGGATGGCGGGTAGAAAGGGCGTGTCGGTGGCCGTTAGAGAGTGGACC
ATGGGCTTGAGTCAAAACGAGGATGTGTACGTAGAATAAGTGTAGAGAGA
ACAAAGCCTCAAATAAGAAAAGAAGAAAGCAGCGAGATATAGGGCTCAGA
AGCAATTGTGAGGTCACTGATGGACAAGACATCGGTCACGTTTCTTCCTA
AGCACCACAGAGCTTGTTTCTGACACCCCAAACAAAATGC
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Coding sequence (CDS) from alignment at scaffold_5:1100729..1102268-

>mRNA_2753 ID=mRNA_2753|Name=jgi.p|Nanoce1779_2|539120|organism=Nannochloropsis oceanica|type=CDS|length=1986bp|location=Sequence derived from alignment at scaffold_5:1100729..1102268- (Nannochloropsis oceanica)
GAACAGGCGACTTGCTGGACCTTTCAAGACGGACAGCCACGGCAGACAGG
GTGAATGCGGCGATTCTTCAAAGCCAAGGCCAAGATTCCGAGCCTGTATT
GCCCAGACTGTTGAGAAAACTGCGTGCGGCGGAGGACGAGCTGGCATCAG
AGATGATGTGTTGAATGCAGGGGGAGCAAGACCCTGGAGCTTCGAGGGCC
CCTGCGCGCAGGAATGAAGCCTCGCGTCTCATTTCCTCCTCTCGGCTCCG
TACACACATCAACCGCCTTGGCAATCGTCTACTCAACGAACTCGGGGCCA
CAGGCAACAGCAATAGCGGCATCACCAATAACAGCAGCAGTGATAGAAGT
AGTGGTAACAGCAGCAGCAGCAGCAGCAGCAGCAGAGGTGGCAGCGTGGG
TCCTTCCTCTCATCCGCCGCAGCAGCATGACGCCCGTGACCCTCACCTCA
CCAACCCCGCCTCCCCCTCCTCGGCCACCTCTCCCTTGCACCTTCCTCAG
TCACTTTACTTGCACTCAAAACGACGCGTCCGCAAGCGTTATATGGATCA
GCTTATCATGAACTACCTCGTAATCAAGGGTGACAAGCATGTGGCCGAGT
GCTTGACCAGGGAGTCAGGGGCAGTGCCGCCCGTGGACTTGAAAACGATT
GAGGAACGCATGAATGTACGAAAGGCCCTGATAGCAGGTGAGGTGGATGC
AGCCATGGCGCATATCGCTAAATGTGACCCGAGGCTATTGGAGAGGGAGC
AGGGACTGGCATTTACTTTAAAGCTGCAGAAGCTCGTGGAGATGATTCGA
CGGCGGATGGAGCAGCGGGAGGGAGGGATGGAGGGCGAGGGTGCAGACGA
CGACGAGGTTATTTTGTCGTATGCAAGAGAAGAGCTTGCGCCTTGGGGCG
AGGCGGAGGAGGGGGGGGGAGGAGGAAAGGGAGAGAATTTGCAAGCGTTG
GAGGAGGCCATGACATTGCTTGTCTTTGGCACGGCCGCCTTCGGAACAGG
CGACTTGCTGGACCTTTCAAGACGGACAGCCACGGCAGACAGGGTGAATG
CGGCGATTCTTCAAAGCCAAGGCCAAGATTCCGAGCCTGTATTGCCCAGA
CTGTTGAGAAAACTGCGTGCGGCGGAGGACGAGCTGGCATCAGAGATGAT
GTGTTGAATGCAGGGGGAGCAAGACCCTGGAGCTTCGAGGGCCCCTGCGC
GCAGGAATGAAGCCTCGCGTCTCATTTCCTCCTCTCGGCTCCGTACACAC
ATCAACCGCCTTGGCAATCGTCTACTCAACGAACTCGGGGCCACAGGCAA
CAGCAATAGCGGCATCACCAATAACAGCAGCAGTGATAGAAGTAGTGGTA
ACAGCAGCAGCAGCAGCAGCAGCAGCAGAGGTGGCAGCGTGGGTCCTTCC
TCTCATCCGCCGCAGCAGCATGACGCCCGTGACCCTCACCTCACCAACCC
CGCCTCCCCCTCCTCGGCCACCTCTCCCTTGCACCTTCCTCAGTCACTTT
ACTTGCACTCAAAACGACGCGTCCGCAAGCGTTATATGGATCAGCTTATC
ATGAACTACCTCGTAATCAAGGGTGACAAGCATGTGGCCGAGTGCTTGAC
CAGGGAGTCAGGGGCAGTGCCGCCCGTGGACTTGAAAACGATTGAGGAAC
GCATGAATGTACGAAAGGCCCTGATAGCAGGTGAGGTGGATGCAGCCATG
GCGCATATCGCTAAATGTGACCCGAGGCTATTGGAGAGGGAGCAGGGACT
GGCATTTACTTTAAAGCTGCAGAAGCTCGTGGAGATGATTCGACGGCGGA
TGGAGCAGCGGGAGGGAGGGATGGAGGGCGAGGGTGCAGACGACGACGAG
GTTATTTTGTCGTATGCAAGAGAAGAGCTTGCGCCTTGGGGCGAGGCGGA
GGAGGGGGGGGGAGGAGGAAAGGGAGAGAATTTGCAAGCGTTGGAGGAGG
CCATGACATTGCTTGTCTTTGGCACGGCCGCCTTCG
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Synonyms
Publications