jgi.p|Nanoce1779_2|581394, mRNA_2752 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|581394
Unique NamemRNA_2752
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1092
Alignment locationscaffold_5:1098341..1100345 -

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Properties
Property NameValue
TranscriptId581480
TrackFilteredModels2
ProteinId581394
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:1098341..1100345 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|581394gene_2752Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|581394mRNA_2752-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2752CDS_2752Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2752 ID=mRNA_2752|Name=jgi.p|Nanoce1779_2|581394|organism=Nannochloropsis oceanica|type=mRNA|length=1092bp
ACAGGGAACGCACACAGGCGCTCATTAGTACCACTTAAATTAGCCGCAGC
AGGTGCAGCCAGAGCCGCTTATACGTCGGGACTCACCATCATCATCATCG
ACCCCCCAAGAATTGTAACTACTAAGGAGCCGCAGGATAGGCGCCTACGA
CGCACACAGCGCACACCTGACAATTCCTCCACCGCCTCTCGCACCAAAAT
TGAACCATGTTGGACGATAATAAAAAAATTGGCATGGGTCTGTTGGGCCT
GAGCTTTCTCTTCATTTCCATGGGTGTCCTCTTCCTCCTGGACTCGACCT
TGATAGCCATAGGCGACTTTCTCTTCCTGACCGGGCTAGTGTTCATTATT
GGCATGCAGCGAACAATTCGGCTGTTCACGAAGCGGGATCGAGCTCCGGG
TATCATTTGCTTTTTCTTGGGAATTCTACTGGTGTTTATAAGATGGACAT
TCATCGGCCTCATCCTCCAGATCTTCGGCTTCGTCAACCTGTTCGGAAAC
TTCTTTCCCCCAGCCATCGCCGTCATGCAGCACACACCCGTCCTAAAAGA
TATTTTGCGGTTACCTGGGATCCGCTACGTGATTAGCAGACTAGGGACGC
GGTCGAGAGCACCTGTGTAATGGAGAAGGACATTTTGCCTGATGGCTTGA
TGATAAATAGAATAATAAATTTGATAAAAAATAGGGGACTGAGCAGGCCA
CAAGTTTTATGTAATTTGGAAGAGGAAGGGTTGACAGGTGTTGTATTTTG
GGCAAAAGGAGAGATTTTGACGTGTGCAAATGAAGGCAGGCATGCTCCTG
GGCAAGGGCAGTGGTAAGCGTAAGGTGTCGTTTGTCTGGGAGGGGCATAA
CCAGCAAAACGTTGAAGAAAATAAAACAAAGCAACCACCAAAGCAAATAT
GAATCAAAAGCCTAGTTTCACCGACGCTCATCAATTAATAGGTAATATCC
GATGCCTCATTCCTATTCACCACTGTGACCGCGTTAGGCTTCCGGTAGTT
TAATTTGATACAAATGATGTTGCCACCGAAGCCGTCAAGAATGCTCCTTG
GAACGACTGGGAGGCAAACGTAAGGATGGTGGTAGTCGACTT
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protein sequence of jgi.p|Nanoce1779_2|581394

>mRNA_2752-protein ID=mRNA_2752-protein|Name=jgi.p|Nanoce1779_2|581394|organism=Nannochloropsis oceanica|type=polypeptide|length=138bp
MLDDNKKIGMGLLGLSFLFISMGVLFLLDSTLIAIGDFLFLTGLVFIIGM
QRTIRLFTKRDRAPGIICFFLGILLVFIRWTFIGLILQIFGFVNLFGNFF
PPAIAVMQHTPVLKDILRLPGIRYVISRLGTRSRAPV*
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mRNA from alignment at scaffold_5:1098341..1100345-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2752 ID=mRNA_2752|Name=jgi.p|Nanoce1779_2|581394|organism=Nannochloropsis oceanica|type=mRNA|length=2005bp|location=Sequence derived from alignment at scaffold_5:1098341..1100345- (Nannochloropsis oceanica)
ACAGGGAACGCACACAGGCGCTCATTAGTACCACTTAAATTAGCCGCAGC
AGGTGCAGCCAGAGCCGCTTATACGTCGGGACTCACCATCATCATCATCG
ACCCCCCAAGAATTGTAACTACTAAGGAGCCGCAGGATAGGCGCCTACGA
CGCACACAGCGCACACCTGACAATTCCTCCACCGCCTCTCGCACCAAAAT
TGAACCATGTTGGACGATAATAAAAAAATTGGCATGGGTCTGTTGGGCCT
GAGCTTTCTCTTCATTTCCATGGGTGTCCTCTTCCTCCTGGACTCGACCT
TGATAGCCATAGGTAAGCGCAAGAGAAAGGAGGCAAGGGTGTAAAAGAAG
CGGAAGGAAAAAGAGCGTAATGTATTGTATCTTATCGCTGCTGTCTTCCT
TGCAAGCAAGGAAAAAGGGCGTGAGGGTCGCATGAGAAAAGGAGGGAGGG
TGAAAGGGGGGGAGGTGAGAGAGCTTGGAAAGGGATGTGCACTCATGCAC
CAGCAACAGCAGCATCAGCGGCAACAGCAGCACCAACAATAGCAGCAACA
GCAACAATAGCAGCAGCAGCAGCAACAACAGCAACTTCAGCAGCAACAGC
AACAGCAGCAGCAACAGCAGCAGTAGCAGTAGCAACAGCATCAATCCTCT
CCTTTATACCACTTTATCTCTCTGGACAAGCTAGCTGCGGTGGCCACGCT
ATCACCTTCCCTTTCACCATTTCTCTCTCCCTCTCTCCCTCCCTCCCTCC
CTCCCTCCACCATCCTTTCACAGGCGACTTTCTCTTCCTGACCGGGCTAG
TGTTCATTATTGGCATGCAGCGAACAATTCGGCTGTTCACGAAGCGGGAT
CGAGCTCCGGGTATCATTTGCTTTTTCTTGGGAATTCTACTGGTGTTTAT
AAGGTAGTATTGGCGGGGGCGAAGGAAGGGAAGGAGGACGGGAGCACTTG
TTGTGGGAGGTATGCCCGACATTGGTAGCTGCATTTTGCCAAAAAGGGGG
GGGTATGGGGCGCTTGTAATGGACGTAGGATGGCGGAGGGGAAGGAAGGG
AGGGTCAGAGACCAGTAAGCATGTTTGTCATGCAGGATGCCTGTTGGTGT
TGTGATGAGTACGTTTGGAGGCCTTGATGATAATAGCGGTATAAGGGGGA
TATTGATGCACAAATTGTCTGCCCCCTCTTTTTCCTGTTTCAATTTCTTT
TCATTTATAGAGAGAGGTTGTTCTTTCGTGAGATCGATGCGGGTCATGGA
TAAGCCTCCATTGCCCGTCCATCTACACAAAGGCACTTATGCCCGTCTCA
TCTCATATCATCCCAATCCCGCCCCCGCCATCCTTCCCTCCCTCCCCTCC
CCCAGATGGACATTCATCGGCCTCATCCTCCAGATCTTCGGCTTCGTCAA
CCTGTTCGGAAACTTCTTTCCCCCAGCCATCGCCGTCATGCAGCACACAC
CCGTCCTAAAAGATATTTTGCGGTTACCTGGGATCCGCTACGTGATTAGC
AGACTAGGGACGCGGTCGAGAGCACCTGTGTAATGGAGAAGGACATTTTG
CCTGATGGCTTGATGATAAATAGAATAATAAATTTGATAAAAAATAGGGG
ACTGAGCAGGCCACAAGTTTTATGTAATTTGGAAGAGGAAGGGTTGACAG
GTGTTGTATTTTGGGCAAAAGGAGAGATTTTGACGTGTGCAAATGAAGGC
AGGCATGCTCCTGGGCAAGGGCAGTGGTAAGCGTAAGGTGTCGTTTGTCT
GGGAGGGGCATAACCAGCAAAACGTTGAAGAAAATAAAACAAAGCAACCA
CCAAAGCAAATATGAATCAAAAGCCTAGTTTCACCGACGCTCATCAATTA
ATAGGTAATATCCGATGCCTCATTCCTATTCACCACTGTGACCGCGTTAG
GCTTCCGGTAGTTTAATTTGATACAAATGATGTTGCCACCGAAGCCGTCA
AGAATGCTCCTTGGAACGACTGGGAGGCAAACGTAAGGATGGTGGTAGTC
GACTT
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Coding sequence (CDS) from alignment at scaffold_5:1098341..1100345-

>mRNA_2752 ID=mRNA_2752|Name=jgi.p|Nanoce1779_2|581394|organism=Nannochloropsis oceanica|type=CDS|length=1242bp|location=Sequence derived from alignment at scaffold_5:1098341..1100345- (Nannochloropsis oceanica)
ATGGACATTCATCGGCCTCATCCTCCAGATCTTCGGCTTCGTCAACCTGT
TCGGAAACTTCTTTCCCCCAGCCATCGCCGTCATGCAGCACACACCCGTC
CTAAAAGATATTTTGCGGTTACCTGGGATCCGCTACGTGATTAGCAGACT
AGGGACGCGGTCGAGAGCACCTGTGTAAGCGACTTTCTCTTCCTGACCGG
GCTAGTGTTCATTATTGGCATGCAGCGAACAATTCGGCTGTTCACGAAGC
GGGATCGAGCTCCGGGTATCATTTGCTTTTTCTTGGGAATTCTACTGGTG
TTTATAAGATGTTGGACGATAATAAAAAAATTGGCATGGGTCTGTTGGGC
CTGAGCTTTCTCTTCATTTCCATGGGTGTCCTCTTCCTCCTGGACTCGAC
CTTGATAGCCATAGATGGACATTCATCGGCCTCATCCTCCAGATCTTCGG
CTTCGTCAACCTGTTCGGAAACTTCTTTCCCCCAGCCATCGCCGTCATGC
AGCACACACCCGTCCTAAAAGATATTTTGCGGTTACCTGGGATCCGCTAC
GTGATTAGCAGACTAGGGACGCGGTCGAGAGCACCTGTGTAAGCGACTTT
CTCTTCCTGACCGGGCTAGTGTTCATTATTGGCATGCAGCGAACAATTCG
GCTGTTCACGAAGCGGGATCGAGCTCCGGGTATCATTTGCTTTTTCTTGG
GAATTCTACTGGTGTTTATAAGATGTTGGACGATAATAAAAAAATTGGCA
TGGGTCTGTTGGGCCTGAGCTTTCTCTTCATTTCCATGGGTGTCCTCTTC
CTCCTGGACTCGACCTTGATAGCCATAGATGGACATTCATCGGCCTCATC
CTCCAGATCTTCGGCTTCGTCAACCTGTTCGGAAACTTCTTTCCCCCAGC
CATCGCCGTCATGCAGCACACACCCGTCCTAAAAGATATTTTGCGGTTAC
CTGGGATCCGCTACGTGATTAGCAGACTAGGGACGCGGTCGAGAGCACCT
GTGTAAGCGACTTTCTCTTCCTGACCGGGCTAGTGTTCATTATTGGCATG
CAGCGAACAATTCGGCTGTTCACGAAGCGGGATCGAGCTCCGGGTATCAT
TTGCTTTTTCTTGGGAATTCTACTGGTGTTTATAAGATGTTGGACGATAA
TAAAAAAATTGGCATGGGTCTGTTGGGCCTGAGCTTTCTCTTCATTTCCA
TGGGTGTCCTCTTCCTCCTGGACTCGACCTTGATAGCCATAG
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Synonyms
Publications