jgi.p|Nanoce1779_2|338261, mRNA_2751 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|338261
Unique NamemRNA_2751
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length446
Alignment locationscaffold_5:1098341..1098786 +

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Properties
Property NameValue
TranscriptId338347
TrackFilteredModels2
ProteinId338261
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:1098341..1098786 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|338261gene_2751Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|338261mRNA_2751-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2751CDS_2751Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2751 ID=mRNA_2751|Name=jgi.p|Nanoce1779_2|338261|organism=Nannochloropsis oceanica|type=mRNA|length=446bp
AAGTCGACTACCACCATCCTTACGTTTGCCTCCCAGTCGTTCCAAGGAGC
ATTCTTGACGGCTTCGGTGGCAACATCATTTGTATCAAATTAAACTACCG
GAAGCCTAACGCGGTCACAGTGGTGAATAGGAATGAGGCATCGGATATTA
CCTATTAATTGATGAGCGTCGGTGAAACTAGGCTTTTGATTCATATTTGC
TTTGGTGGTTGCTTTGTTTTATTTTCTTCAACGTTTTGCTGGTTATGCCC
CTCCCAGACAAACGACACCTTACGCTTACCACTGCCCTTGCCCAGGAGCA
TGCCTGCCTTCATTTGCACACGTCAAAATCTCTCCTTTTGCCCAAAATAC
AACACCTGTCAACCCTTCCTCTTCCAAATTACATAAAACTTGTGGCCTGC
TCAGTCCCCTATTTTTTATCAAATTTATTATTCTATTTATCATCAA
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protein sequence of jgi.p|Nanoce1779_2|338261

>mRNA_2751-protein ID=mRNA_2751-protein|Name=jgi.p|Nanoce1779_2|338261|organism=Nannochloropsis oceanica|type=polypeptide|length=75bp
MSVGETRLLIHICFGGCFVLFSSTFCWLCPSQTNDTLRLPLPLPRSMPAF
ICTRQNLSFCPKYNTCQPFLFQIT*
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mRNA from alignment at scaffold_5:1098341..1098786+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2751 ID=mRNA_2751|Name=jgi.p|Nanoce1779_2|338261|organism=Nannochloropsis oceanica|type=mRNA|length=446bp|location=Sequence derived from alignment at scaffold_5:1098341..1098786+ (Nannochloropsis oceanica)
AAGTCGACTACCACCATCCTTACGTTTGCCTCCCAGTCGTTCCAAGGAGC
ATTCTTGACGGCTTCGGTGGCAACATCATTTGTATCAAATTAAACTACCG
GAAGCCTAACGCGGTCACAGTGGTGAATAGGAATGAGGCATCGGATATTA
CCTATTAATTGATGAGCGTCGGTGAAACTAGGCTTTTGATTCATATTTGC
TTTGGTGGTTGCTTTGTTTTATTTTCTTCAACGTTTTGCTGGTTATGCCC
CTCCCAGACAAACGACACCTTACGCTTACCACTGCCCTTGCCCAGGAGCA
TGCCTGCCTTCATTTGCACACGTCAAAATCTCTCCTTTTGCCCAAAATAC
AACACCTGTCAACCCTTCCTCTTCCAAATTACATAAAACTTGTGGCCTGC
TCAGTCCCCTATTTTTTATCAAATTTATTATTCTATTTATCATCAA
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Coding sequence (CDS) from alignment at scaffold_5:1098341..1098786+

>mRNA_2751 ID=mRNA_2751|Name=jgi.p|Nanoce1779_2|338261|organism=Nannochloropsis oceanica|type=CDS|length=225bp|location=Sequence derived from alignment at scaffold_5:1098341..1098786+ (Nannochloropsis oceanica)
ATGAGCGTCGGTGAAACTAGGCTTTTGATTCATATTTGCTTTGGTGGTTG
CTTTGTTTTATTTTCTTCAACGTTTTGCTGGTTATGCCCCTCCCAGACAA
ACGACACCTTACGCTTACCACTGCCCTTGCCCAGGAGCATGCCTGCCTTC
ATTTGCACACGTCAAAATCTCTCCTTTTGCCCAAAATACAACACCTGTCA
ACCCTTCCTCTTCCAAATTACATAA
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Synonyms
Publications