jgi.p|Nanoce1779_2|581388, mRNA_2749 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|581388
Unique NamemRNA_2749
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length669
Alignment locationscaffold_5:1092283..1093031 +

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Properties
Property NameValue
TranscriptId581474
TrackFilteredModels2
ProteinId581388
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:1092283..1093031 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|581388gene_2749Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|581388mRNA_2749-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2749CDS_2749Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2749 ID=mRNA_2749|Name=jgi.p|Nanoce1779_2|581388|organism=Nannochloropsis oceanica|type=mRNA|length=669bp
GTATAAGGTTCGTCAGGACTTATGCGATGTCAATTACATATGTGAGCACG
TAAGCGAGAGCAGACGAAGAGGGAAGTGGGGGCGCTTGTGAAAAACGTTT
GTGACGCCTGCGCCAAAAGTTTGGATTAGAGAAAGCAGCAAAATCCGCAT
TAAAGCTTGGCATGGTTGTCCAGTCCTACAAGTTATTGAGAATGAGCCGT
AGACCAATGTTTCCACGGATTAAGGGGTTCGGTAATGGCTTCCAAAAAGG
CTTTTGGGCAGTGGTGCGCCTCGGGGAATACTACGCTGTTTAAAGTTTTA
AGCTTATTAACACCTTCAATTTCTTCGGGGCTGCTTGTCGTACCATTTTT
ATTCCCTTGCGCCACCACCCATTACTCCCTCCCTTGTTCCCAGGCCCTTC
CTATTCTAAGGGTGACAATCTTTGCTGATGCATACCTTTTGTACAGTATC
AGGCCATAAATACTTCGCCAAGTCAACCAACGCTCCCACTTTCCCACCAC
TAGAAGCAGCATTAAAATGTCGAGCAAGGATACTCCCCCGCCTCCGTCAT
TCCCCATGCCTCCTCCAACTCGGGGTGGCTCTTCTTCACTACTGTCGCGC
GTGCAAGCTTTCTTGCCCCAAATTGCGGAGGCAAATGCCAAACTGGAGGA
GCGGCTGCTGGCGGGCCAA
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protein sequence of jgi.p|Nanoce1779_2|581388

>mRNA_2749-protein ID=mRNA_2749-protein|Name=jgi.p|Nanoce1779_2|581388|organism=Nannochloropsis oceanica|type=polypeptide|length=75bp
MASKKAFGQWCASGNTTLFKVLSLLTPSISSGLLVVPFLFPCATTHYSLP
CSQALPILRVTIFADAYLLYSIRP*
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mRNA from alignment at scaffold_5:1092283..1093031+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2749 ID=mRNA_2749|Name=jgi.p|Nanoce1779_2|581388|organism=Nannochloropsis oceanica|type=mRNA|length=749bp|location=Sequence derived from alignment at scaffold_5:1092283..1093031+ (Nannochloropsis oceanica)
GTATAAGGTTCGTCAGGACTTATGCGATGTCAATTACATATGTGAGCACG
TAAGCGAGAGCAGACGAAGAGGGAAGTGGGGGCGCTTGTGAAAAACGTTT
GTGACGCCTGCGCCAAAAGTTTGGATTAGAGAAAGCAGCAAAATCCGCAT
TAAAGCTTGGCATGGTTGTCCAGTCCTACAAGTTATTGAGAATGAGCCGT
AGACCAATGTTTCCACGGATTAAGGGGTTCGGTAATGGCTTCCAAAAAGG
CTTTTGGGCAGTGGTGCGCCTCGGGGAATACTACGCTGTTTAAAGTTTTA
AGCTTATTAACACCTTCAATTTCTTCGGGGCTGCTTGTCGTACCATTTTT
ATTCCCTTGCGCCACCACCCATTACTCCCTCCCTTGTTCCCAGGCCCTTC
CTATTCTAAGGGTGACAATCTTTGCTGATGCATACCTTTTGTACAGTATC
AGGCCATAAATACTTCGCCAAGTCAACCAACGCTCCCACTTTCCCACCAC
TAGAAGCAGCATTAAAATGTCGAGCAAGGATACTCCCCCGCCTCCGTCAT
TCCCCATGCCTCCTCCAACTCGGGGTGGCTCTTCTTCACGTACGTAGGTC
GTGGAGGAATCCTGAGTTTCAACGCGTAGCCCTCACATATCCTTTCTACA
AATACTATTACCCTTGTAGTACTGTCGCGCGTGCAAGCTTTCTTGCCCCA
AATTGCGGAGGCAAATGCCAAACTGGAGGAGCGGCTGCTGGCGGGCCAA
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Coding sequence (CDS) from alignment at scaffold_5:1092283..1093031+

>mRNA_2749 ID=mRNA_2749|Name=jgi.p|Nanoce1779_2|581388|organism=Nannochloropsis oceanica|type=CDS|length=225bp|location=Sequence derived from alignment at scaffold_5:1092283..1093031+ (Nannochloropsis oceanica)
ATGGCTTCCAAAAAGGCTTTTGGGCAGTGGTGCGCCTCGGGGAATACTAC
GCTGTTTAAAGTTTTAAGCTTATTAACACCTTCAATTTCTTCGGGGCTGC
TTGTCGTACCATTTTTATTCCCTTGCGCCACCACCCATTACTCCCTCCCT
TGTTCCCAGGCCCTTCCTATTCTAAGGGTGACAATCTTTGCTGATGCATA
CCTTTTGTACAGTATCAGGCCATAA
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Synonyms
Publications