jgi.p|Nanoce1779_2|581386, mRNA_2748 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|581386
Unique NamemRNA_2748
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1617
Alignment locationscaffold_5:1090453..1092223 -

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Properties
Property NameValue
TranscriptId581472
TrackFilteredModels2
ProteinId581386
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:1090453..1092223 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|581386gene_2748Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|581386mRNA_2748-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2748CDS_2748Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2748 ID=mRNA_2748|Name=jgi.p|Nanoce1779_2|581386|organism=Nannochloropsis oceanica|type=mRNA|length=1617bp
AGCATGGAGGCAAGCCCGCGGAAGCGCCATGGTGGGGCTGCCAACATCGC
AGGGCCAGGGACTAGTCCGTCGTACATGATGGAGCTTCCGATCACGCCAG
TAGCCGTCGAAGCAGAGGAAATTGTCATTCTCAGCCCCTCCAAGGGCTTT
ACCACACCCTTGTCGAAGGGGGGGGGCAGTTCCGGCCGCCGCCACCATGT
CCCACCGTTCAATTCACTAAGGCACAAGGACCCTGCAATAGTCGTGAAGC
GTGCACGTAGCGCACAGGAATTGGTACGGGCTAAAAAGCTATTGCGTGCC
TTGGGTTTTTTCTACCATTTGAGCTTGGGTGTACTGTTCATGACATTTAC
CGAGCTTCTTCTGAATGATTTCGACAACAATTATGCCAACACGGCCGCTT
TCCTGGGGACGTGCGCGGGCGTGGAACGAGGAGTGCAGTTCTTCACATCT
CCGTTCCTTGGTAATCTGAGTGATAGCGTTGGTCGACGGCCCATCCTGTT
TATGTCCCTGCTCCTGCATCTGGCCTCCCTGCTGGTCGTGGCCGTCATCC
CCACGCGTCACACAGTCTTTGTGTATTTTATGATTAATGGCGGCTTCAAC
GTGACGTATGGAATGATCAACGCAACCGTCGCAGATCTATGCACCGCCCA
GGCAAAGACAGGGAAGGGGGAGCTGGCTCAACAGTACGGAAAACTGGGCA
TGGCTGTGGGGCTTAGCATGATTCTCGGGCCCGCCATTGGCCCTGTCCTC
CAAAAGATGAACGTGCTCTACCCCGTCTACCTCTCCCTCCTCTTCCTGGT
TATCTCCCTCGGCCTTGCGTGGTTTACGCCCGAGAGCCTGGACGACAAAT
ACCGAGCGGGGAGTATCGACTGGAAGAAAGCCAGCCCGTTCTATGCCCTT
CGCAAATCCCTGAAATACCGTCGCTTTGTCTTCTTCGCCGCGCCCTTTTT
TCTTTCCCAGCTGTCGGAGGGGGTGTATCACTTTATGGTATTGTACACCA
AGGTCCGGATCGGGTGGGATTTTGTGGCTTTAGGCATATATATCTCGATT
GTTGGCATATGTCTGGCGGTGGTACAGGGAAATTTAAAGTTTATCGTCCC
CAAGATAATTAGCGAGAATGGCAGTGTGACCACGGGGTTGCTTGGGCATG
CGGTGGCGATGGGTGTCACGTCGATGGCGAGCGAGGGGTGGATGATGGGG
CTGTGCATTATACCGCAGGTGCGTATACGTTTCTTTTTTCAAAATCGAGC
CATTAACTTCCCTTCCCTCCTTCGTACTCTTTGTACCTTCCTCTCTCCCT
CTGTCCCTGGACGATAGATAGCTTCGATACTTACTGCATTCATAAATGCC
TCTTCCCTCCCTCCCTCTCTCCCTCCTTCTCCCCCTTCCTCCGCCAAAGA
TGGTTGCTTCTCTGAAAGGGCCTGGTCTAATGTCAGCGTTGGCCACCGGG
GTCTCCCCGGAGGAGCAGGGGGTGTTGCAGGGGTCTGTATCCAGTCTACG
CGTCCTGAGCAAAGCGATAGGTGGACCGTTATTCGGTGCCGTGATGGCCT
TCTCCTTGAAGGAAGCAGGGGGGGAGGGAGGGAAGGAGGCAGGGGCAAAA
GGGGGGTGGATTCTGGG
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protein sequence of jgi.p|Nanoce1779_2|581386

>mRNA_2748-protein ID=mRNA_2748-protein|Name=jgi.p|Nanoce1779_2|581386|organism=Nannochloropsis oceanica|type=polypeptide|length=438bp
MEASPRKRHGGAANIAGPGTSPSYMMELPITPVAVEAEEIVILSPSKGFT
TPLSKGGGSSGRRHHVPPFNSLRHKDPAIVVKRARSAQELVRAKKLLRAL
GFFYHLSLGVLFMTFTELLLNDFDNNYANTAAFLGTCAGVERGVQFFTSP
FLGNLSDSVGRRPILFMSLLLHLASLLVVAVIPTRHTVFVYFMINGGFNV
TYGMINATVADLCTAQAKTGKGELAQQYGKLGMAVGLSMILGPAIGPVLQ
KMNVLYPVYLSLLFLVISLGLAWFTPESLDDKYRAGSIDWKKASPFYALR
KSLKYRRFVFFAAPFFLSQLSEGVYHFMVLYTKVRIGWDFVALGIYISIV
GICLAVVQGNLKFIVPKIISENGSVTTGLLGHAVAMGVTSMASEGWMMGL
CIIPQVRIRFFFQNRAINFPSLLRTLCTFLSPSVPGR*
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mRNA from alignment at scaffold_5:1090453..1092223-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2748 ID=mRNA_2748|Name=jgi.p|Nanoce1779_2|581386|organism=Nannochloropsis oceanica|type=mRNA|length=1771bp|location=Sequence derived from alignment at scaffold_5:1090453..1092223- (Nannochloropsis oceanica)
AGCATGGAGGCAAGCCCGCGGAAGCGCCATGGTGGGGCTGCCAACATCGC
AGGGCCAGGGACTAGTCCGTCGTACATGATGGAGCTTCCGATCACGCCAG
TAGCCGTCGAAGCAGAGGAAATTGTCATTCTCAGCCCCTCCAAGGGCTTT
ACCACACCCTTGTCGAAGGGGGGGGGCAGTTCCGGCCGCCGCCACCATGT
CCCACCGTTCAATTCACTAAGGCACAAGGACCCTGCAATAGTCGTGAAGC
GTGCACGTAGCGCACAGGAATTGGTACGGGCTAAAAAGCTATTGCGTGCC
TTGGGTTTTTTCTACCATTTGAGCTTGGGTGTACTGTTCATGACATTTAC
CGAGCTTCTTCTGAATGATTTCGACAACAATTATGCCAACACGGCCGCTT
TCCTGGGGACGTGCGCGGGCGTGGAACGAGGAGTGCAGTTCTTCACATCT
CCGTTCCTTGGTAATCTGAGTGATAGCGTTGGTCGACGGCCCATCCTGTT
TATGTCCCTGCTCCTGCATCTGGCCTCCCTGCTGGTCGTGGCCGTCATCC
CCACGCGTCACACAGTCTTTGTGTATTTTATGATTAATGGCGGCTTCAAC
GTGACGTATGGAATGATCAACGCAACCGTCGCAGATCTATGCACCGCCCA
GGCAAAGACAGGGAAGGGGGAGCTGGCTCAACAGTACGGAAAACTGGGCA
TGGCTGTGGGGCTTAGCATGATTCTCGGGTACGTGGATTTGGTTGGTAAG
GAGGGTAGTGGTGTTTGTGTTTTTTCTTCTGTCAAGACGCAGCACTTTGT
CTTCACATCCTGTAGCTCTGTTGACGCATACCCTCCCCTCCTCCCTCTCC
TATCCACCCATATCACACACACACATCCACAGGCCCGCCATTGGCCCTGT
CCTCCAAAAGATGAACGTGCTCTACCCCGTCTACCTCTCCCTCCTCTTCC
TGGTTATCTCCCTCGGCCTTGCGTGGTTTACGCCCGAGAGCCTGGACGAC
AAATACCGAGCGGGGAGTATCGACTGGAAGAAAGCCAGCCCGTTCTATGC
CCTTCGCAAATCCCTGAAATACCGTCGCTTTGTCTTCTTCGCCGCGCCCT
TTTTTCTTTCCCAGCTGTCGGAGGGGGTGTATCACTTTATGGTATTGTAC
ACCAAGGTCCGGATCGGGTGGGATTTTGTGGCTTTAGGCATATATATCTC
GATTGTTGGCATATGTCTGGCGGTGGTACAGGGAAATTTAAAGTTTATCG
TCCCCAAGATAATTAGCGAGAATGGCAGTGTGACCACGGGGTTGCTTGGG
CATGCGGTGGCGATGGGTGTCACGTCGATGGCGAGCGAGGGGTGGATGAT
GGGGCTGTGCATTATACCGCAGGTGCGTATACGTTTCTTTTTTCAAAATC
GAGCCATTAACTTCCCTTCCCTCCTTCGTACTCTTTGTACCTTCCTCTCT
CCCTCTGTCCCTGGACGATAGATAGCTTCGATACTTACTGCATTCATAAA
TGCCTCTTCCCTCCCTCCCTCTCTCCCTCCTTCTCCCCCTTCCTCCGCCA
AAGATGGTTGCTTCTCTGAAAGGGCCTGGTCTAATGTCAGCGTTGGCCAC
CGGGGTCTCCCCGGAGGAGCAGGGGGTGTTGCAGGGGTCTGTATCCAGTC
TACGCGTCCTGAGCAAAGCGATAGGTGGACCGTTATTCGGTGCCGTGATG
GCCTTCTCCTTGAAGGAAGCAGGGGGGGAGGGAGGGAAGGAGGCAGGGGC
AAAAGGGGGGTGGATTCTGGG
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Coding sequence (CDS) from alignment at scaffold_5:1090453..1092223-

>mRNA_2748 ID=mRNA_2748|Name=jgi.p|Nanoce1779_2|581386|organism=Nannochloropsis oceanica|type=CDS|length=2628bp|location=Sequence derived from alignment at scaffold_5:1090453..1092223- (Nannochloropsis oceanica)
GCCCGCCATTGGCCCTGTCCTCCAAAAGATGAACGTGCTCTACCCCGTCT
ACCTCTCCCTCCTCTTCCTGGTTATCTCCCTCGGCCTTGCGTGGTTTACG
CCCGAGAGCCTGGACGACAAATACCGAGCGGGGAGTATCGACTGGAAGAA
AGCCAGCCCGTTCTATGCCCTTCGCAAATCCCTGAAATACCGTCGCTTTG
TCTTCTTCGCCGCGCCCTTTTTTCTTTCCCAGCTGTCGGAGGGGGTGTAT
CACTTTATGGTATTGTACACCAAGGTCCGGATCGGGTGGGATTTTGTGGC
TTTAGGCATATATATCTCGATTGTTGGCATATGTCTGGCGGTGGTACAGG
GAAATTTAAAGTTTATCGTCCCCAAGATAATTAGCGAGAATGGCAGTGTG
ACCACGGGGTTGCTTGGGCATGCGGTGGCGATGGGTGTCACGTCGATGGC
GAGCGAGGGGTGGATGATGGGGCTGTGCATTATACCGCAGGTGCGTATAC
GTTTCTTTTTTCAAAATCGAGCCATTAACTTCCCTTCCCTCCTTCGTACT
CTTTGTACCTTCCTCTCTCCCTCTGTCCCTGGACGATAGATGGAGGCAAG
CCCGCGGAAGCGCCATGGTGGGGCTGCCAACATCGCAGGGCCAGGGACTA
GTCCGTCGTACATGATGGAGCTTCCGATCACGCCAGTAGCCGTCGAAGCA
GAGGAAATTGTCATTCTCAGCCCCTCCAAGGGCTTTACCACACCCTTGTC
GAAGGGGGGGGGCAGTTCCGGCCGCCGCCACCATGTCCCACCGTTCAATT
CACTAAGGCACAAGGACCCTGCAATAGTCGTGAAGCGTGCACGTAGCGCA
CAGGAATTGGTACGGGCTAAAAAGCTATTGCGTGCCTTGGGTTTTTTCTA
CCATTTGAGCTTGGGTGTACTGTTCATGACATTTACCGAGCTTCTTCTGA
ATGATTTCGACAACAATTATGCCAACACGGCCGCTTTCCTGGGGACGTGC
GCGGGCGTGGAACGAGGAGTGCAGTTCTTCACATCTCCGTTCCTTGGTAA
TCTGAGTGATAGCGTTGGTCGACGGCCCATCCTGTTTATGTCCCTGCTCC
TGCATCTGGCCTCCCTGCTGGTCGTGGCCGTCATCCCCACGCGTCACACA
GTCTTTGTGTATTTTATGATTAATGGCGGCTTCAACGTGACGTATGGAAT
GATCAACGCAACCGTCGCAGATCTATGCACCGCCCAGGCAAAGACAGGGA
AGGGGGAGCTGGCTCAACAGTACGGAAAACTGGGCATGGCTGTGGGGCTT
AGCATGATTCTCGGGCCCGCCATTGGCCCTGTCCTCCAAAAGATGAACGT
GCTCTACCCCGTCTACCTCTCCCTCCTCTTCCTGGTTATCTCCCTCGGCC
TTGCGTGGTTTACGCCCGAGAGCCTGGACGACAAATACCGAGCGGGGAGT
ATCGACTGGAAGAAAGCCAGCCCGTTCTATGCCCTTCGCAAATCCCTGAA
ATACCGTCGCTTTGTCTTCTTCGCCGCGCCCTTTTTTCTTTCCCAGCTGT
CGGAGGGGGTGTATCACTTTATGGTATTGTACACCAAGGTCCGGATCGGG
TGGGATTTTGTGGCTTTAGGCATATATATCTCGATTGTTGGCATATGTCT
GGCGGTGGTACAGGGAAATTTAAAGTTTATCGTCCCCAAGATAATTAGCG
AGAATGGCAGTGTGACCACGGGGTTGCTTGGGCATGCGGTGGCGATGGGT
GTCACGTCGATGGCGAGCGAGGGGTGGATGATGGGGCTGTGCATTATACC
GCAGGTGCGTATACGTTTCTTTTTTCAAAATCGAGCCATTAACTTCCCTT
CCCTCCTTCGTACTCTTTGTACCTTCCTCTCTCCCTCTGTCCCTGGACGA
TAGATGGAGGCAAGCCCGCGGAAGCGCCATGGTGGGGCTGCCAACATCGC
AGGGCCAGGGACTAGTCCGTCGTACATGATGGAGCTTCCGATCACGCCAG
TAGCCGTCGAAGCAGAGGAAATTGTCATTCTCAGCCCCTCCAAGGGCTTT
ACCACACCCTTGTCGAAGGGGGGGGGCAGTTCCGGCCGCCGCCACCATGT
CCCACCGTTCAATTCACTAAGGCACAAGGACCCTGCAATAGTCGTGAAGC
GTGCACGTAGCGCACAGGAATTGGTACGGGCTAAAAAGCTATTGCGTGCC
TTGGGTTTTTTCTACCATTTGAGCTTGGGTGTACTGTTCATGACATTTAC
CGAGCTTCTTCTGAATGATTTCGACAACAATTATGCCAACACGGCCGCTT
TCCTGGGGACGTGCGCGGGCGTGGAACGAGGAGTGCAGTTCTTCACATCT
CCGTTCCTTGGTAATCTGAGTGATAGCGTTGGTCGACGGCCCATCCTGTT
TATGTCCCTGCTCCTGCATCTGGCCTCCCTGCTGGTCGTGGCCGTCATCC
CCACGCGTCACACAGTCTTTGTGTATTTTATGATTAATGGCGGCTTCAAC
GTGACGTATGGAATGATCAACGCAACCGTCGCAGATCTATGCACCGCCCA
GGCAAAGACAGGGAAGGGGGAGCTGGCTCAACAGTACGGAAAACTGGGCA
TGGCTGTGGGGCTTAGCATGATTCTCGG
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Synonyms
Publications