jgi.p|Nanoce1779_2|669280, mRNA_2745 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|669280
Unique NamemRNA_2745
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1535
Alignment locationscaffold_5:1080264..1081798 +

Link to JBrowse

Properties
Property NameValue
TranscriptId669366
TrackFilteredModels2
ProteinId669280
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:1080264..1081798 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|669280gene_2745Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|669280mRNA_2745-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2745CDS_2745Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2745 ID=mRNA_2745|Name=jgi.p|Nanoce1779_2|669280|organism=Nannochloropsis oceanica|type=mRNA|length=1535bp
GCTCGTTTATATCTTTCCTACACTGATAGCCACCATGGCCCCCTGTACAT
TCCAACCAGAGGTGTACTTTGTTGCTGGCGTGTCTGTCGTTCTTTTGCGC
CCCACTCTTTCTCATTCCCCTTCGCCTCCCCGCTCCCCTGCCACACACAC
ATGAGCAGGCACCATTTAAAGACATGTCTAGCAGCAGCAGTACCGTAGCC
TCCCTGCAAGCCAAGCTGGGCGAAATCCAAAAAGAGCGTCAAATTCTTGA
GAAGAAGCTGAGCCATGCCCGCGGCGGCAGTGGTGGCAGTGGTGGCGGGT
GGGGTCGCAGTAATCGACAAGTCATCCTAGATGAAGCAGGAGCAGGGGGA
GGAGGAGGAGGAGGAGGAAGCCGCAGAGGAGGAGCGAGCGACGGTACCAT
GTACCCCAGGCACGGGCGTCCGACCTCTCCTCGGCGGGACGGGGGATTGC
TTTCTCGCGTGGGTGAGAAGCGGGGAAGATTGGCCTCGGCGGTGAGTGTA
CCGGGAGGGGAGGAGAAGGGGGAGATCGAGGAAGGGGAAGTGCCCGATCA
GGAGGGAGGGAGGGCTCGCAAGACTCTGCGACGTGATGGAGAAAACGGAG
GAAGGGGAGGAAGAGGGAGGGGCCCAGCTGTGGCAACGGTGGTGGTGGAT
CCTGCACGACAGGCAGCGCTGAAGGCGATGAGGGACGAGGCATACGAGGC
GGCAGAATTAAGGGCAGAAGAGAGAGGGGAAATGAAGAATATCTACCAGA
AGGAAGAGGTGAAGAAGAGGGACAGACGGATGTTTGGGGTGTTGATGGGG
CATTTGGGTGCGGCGCAGGCGAGGCTGAAGAAGGATGGGGAGGGAAGTGG
GATTCTGCGGAAGCAACGAGGGGTGATGGAGGTGGTGGTGGGTAAGGATA
GGGAGGAGGCGGAGAGGAGGAAGGTGAAGGAGGAAGAGGAGAGGGAGAAG
AGGAGGAGGGGAGAGGAGAGGAGGAGGGAGTGGTTGGCGGTGCGACAGAA
GAAGGTGGAGGGAGAGCTAGACTGCGCGAGGTATAGGGAATATTGGGGTG
CATTTAAGGGCTTTATTTTGACGCGAGTGGAGCCCAAGTTGTTTTGGTTG
CCGGCACGGATGAATGAGGCTATGACGGAGAAATTGGAGGAGAGTCGGAG
GGAGGGGGAGGAGAAGGTAAGGAGGAGGGAGGAGGAGAGGGCGGAAGAGG
GGAGGAAGGCGGAGTTGGCTTTCACGGAGAAGTGGGGACCGGCGGGGAGA
GGGGAGGAGGAGGAGGACGGGGGTGGAGGAAAGGAGAGGGAGGATGCCAC
AGTGCTTTCTGCTGGGGTGGAAGACGAGTCTTCGTCAGTTGGGAATGGGG
ATGGGAATGGGGATGGGGGGGCAGGGGAGGAGGGAGAGGGTTATGGTAAG
GGAGAGGTTGTGGTGGAGGAAAAGAAGAAGGGGGAAAGGGGAGAGGAGGA
GAAAGATGAGATGGTGGATGAAAAGAGGAGGAAGGAGAGGGATGAGGAGG
AGGGGGGGGAGGAGGAGGAGGGGGGGGTCACCTAA
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protein sequence of jgi.p|Nanoce1779_2|669280

>mRNA_2745-protein ID=mRNA_2745-protein|Name=jgi.p|Nanoce1779_2|669280|organism=Nannochloropsis oceanica|type=polypeptide|length=454bp
MSSSSSTVASLQAKLGEIQKERQILEKKLSHARGGSGGSGGGWGRSNRQV
ILDEAGAGGGGGGGGSRRGGASDGTMYPRHGRPTSPRRDGGLLSRVGEKR
GRLASAVSVPGGEEKGEIEEGEVPDQEGGRARKTLRRDGENGGRGGRGRG
PAVATVVVDPARQAALKAMRDEAYEAAELRAEERGEMKNIYQKEEVKKRD
RRMFGVLMGHLGAAQARLKKDGEGSGILRKQRGVMEVVVGKDREEAERRK
VKEEEEREKRRRGEERRREWLAVRQKKVEGELDCARYREYWGAFKGFILT
RVEPKLFWLPARMNEAMTEKLEESRREGEEKVRRREEERAEEGRKAELAF
TEKWGPAGRGEEEEDGGGGKEREDATVLSAGVEDESSSVGNGDGNGDGGA
GEEGEGYGKGEVVVEEKKKGERGEEEKDEMVDEKRRKERDEEEGGEEEEG
GVT*
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mRNA from alignment at scaffold_5:1080264..1081798+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2745 ID=mRNA_2745|Name=jgi.p|Nanoce1779_2|669280|organism=Nannochloropsis oceanica|type=mRNA|length=1535bp|location=Sequence derived from alignment at scaffold_5:1080264..1081798+ (Nannochloropsis oceanica)
GCTCGTTTATATCTTTCCTACACTGATAGCCACCATGGCCCCCTGTACAT
TCCAACCAGAGGTGTACTTTGTTGCTGGCGTGTCTGTCGTTCTTTTGCGC
CCCACTCTTTCTCATTCCCCTTCGCCTCCCCGCTCCCCTGCCACACACAC
ATGAGCAGGCACCATTTAAAGACATGTCTAGCAGCAGCAGTACCGTAGCC
TCCCTGCAAGCCAAGCTGGGCGAAATCCAAAAAGAGCGTCAAATTCTTGA
GAAGAAGCTGAGCCATGCCCGCGGCGGCAGTGGTGGCAGTGGTGGCGGGT
GGGGTCGCAGTAATCGACAAGTCATCCTAGATGAAGCAGGAGCAGGGGGA
GGAGGAGGAGGAGGAGGAAGCCGCAGAGGAGGAGCGAGCGACGGTACCAT
GTACCCCAGGCACGGGCGTCCGACCTCTCCTCGGCGGGACGGGGGATTGC
TTTCTCGCGTGGGTGAGAAGCGGGGAAGATTGGCCTCGGCGGTGAGTGTA
CCGGGAGGGGAGGAGAAGGGGGAGATCGAGGAAGGGGAAGTGCCCGATCA
GGAGGGAGGGAGGGCTCGCAAGACTCTGCGACGTGATGGAGAAAACGGAG
GAAGGGGAGGAAGAGGGAGGGGCCCAGCTGTGGCAACGGTGGTGGTGGAT
CCTGCACGACAGGCAGCGCTGAAGGCGATGAGGGACGAGGCATACGAGGC
GGCAGAATTAAGGGCAGAAGAGAGAGGGGAAATGAAGAATATCTACCAGA
AGGAAGAGGTGAAGAAGAGGGACAGACGGATGTTTGGGGTGTTGATGGGG
CATTTGGGTGCGGCGCAGGCGAGGCTGAAGAAGGATGGGGAGGGAAGTGG
GATTCTGCGGAAGCAACGAGGGGTGATGGAGGTGGTGGTGGGTAAGGATA
GGGAGGAGGCGGAGAGGAGGAAGGTGAAGGAGGAAGAGGAGAGGGAGAAG
AGGAGGAGGGGAGAGGAGAGGAGGAGGGAGTGGTTGGCGGTGCGACAGAA
GAAGGTGGAGGGAGAGCTAGACTGCGCGAGGTATAGGGAATATTGGGGTG
CATTTAAGGGCTTTATTTTGACGCGAGTGGAGCCCAAGTTGTTTTGGTTG
CCGGCACGGATGAATGAGGCTATGACGGAGAAATTGGAGGAGAGTCGGAG
GGAGGGGGAGGAGAAGGTAAGGAGGAGGGAGGAGGAGAGGGCGGAAGAGG
GGAGGAAGGCGGAGTTGGCTTTCACGGAGAAGTGGGGACCGGCGGGGAGA
GGGGAGGAGGAGGAGGACGGGGGTGGAGGAAAGGAGAGGGAGGATGCCAC
AGTGCTTTCTGCTGGGGTGGAAGACGAGTCTTCGTCAGTTGGGAATGGGG
ATGGGAATGGGGATGGGGGGGCAGGGGAGGAGGGAGAGGGTTATGGTAAG
GGAGAGGTTGTGGTGGAGGAAAAGAAGAAGGGGGAAAGGGGAGAGGAGGA
GAAAGATGAGATGGTGGATGAAAAGAGGAGGAAGGAGAGGGATGAGGAGG
AGGGGGGGGAGGAGGAGGAGGGGGGGGTCACCTAA
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Coding sequence (CDS) from alignment at scaffold_5:1080264..1081798+

>mRNA_2745 ID=mRNA_2745|Name=jgi.p|Nanoce1779_2|669280|organism=Nannochloropsis oceanica|type=CDS|length=1362bp|location=Sequence derived from alignment at scaffold_5:1080264..1081798+ (Nannochloropsis oceanica)
ATGTCTAGCAGCAGCAGTACCGTAGCCTCCCTGCAAGCCAAGCTGGGCGA
AATCCAAAAAGAGCGTCAAATTCTTGAGAAGAAGCTGAGCCATGCCCGCG
GCGGCAGTGGTGGCAGTGGTGGCGGGTGGGGTCGCAGTAATCGACAAGTC
ATCCTAGATGAAGCAGGAGCAGGGGGAGGAGGAGGAGGAGGAGGAAGCCG
CAGAGGAGGAGCGAGCGACGGTACCATGTACCCCAGGCACGGGCGTCCGA
CCTCTCCTCGGCGGGACGGGGGATTGCTTTCTCGCGTGGGTGAGAAGCGG
GGAAGATTGGCCTCGGCGGTGAGTGTACCGGGAGGGGAGGAGAAGGGGGA
GATCGAGGAAGGGGAAGTGCCCGATCAGGAGGGAGGGAGGGCTCGCAAGA
CTCTGCGACGTGATGGAGAAAACGGAGGAAGGGGAGGAAGAGGGAGGGGC
CCAGCTGTGGCAACGGTGGTGGTGGATCCTGCACGACAGGCAGCGCTGAA
GGCGATGAGGGACGAGGCATACGAGGCGGCAGAATTAAGGGCAGAAGAGA
GAGGGGAAATGAAGAATATCTACCAGAAGGAAGAGGTGAAGAAGAGGGAC
AGACGGATGTTTGGGGTGTTGATGGGGCATTTGGGTGCGGCGCAGGCGAG
GCTGAAGAAGGATGGGGAGGGAAGTGGGATTCTGCGGAAGCAACGAGGGG
TGATGGAGGTGGTGGTGGGTAAGGATAGGGAGGAGGCGGAGAGGAGGAAG
GTGAAGGAGGAAGAGGAGAGGGAGAAGAGGAGGAGGGGAGAGGAGAGGAG
GAGGGAGTGGTTGGCGGTGCGACAGAAGAAGGTGGAGGGAGAGCTAGACT
GCGCGAGGTATAGGGAATATTGGGGTGCATTTAAGGGCTTTATTTTGACG
CGAGTGGAGCCCAAGTTGTTTTGGTTGCCGGCACGGATGAATGAGGCTAT
GACGGAGAAATTGGAGGAGAGTCGGAGGGAGGGGGAGGAGAAGGTAAGGA
GGAGGGAGGAGGAGAGGGCGGAAGAGGGGAGGAAGGCGGAGTTGGCTTTC
ACGGAGAAGTGGGGACCGGCGGGGAGAGGGGAGGAGGAGGAGGACGGGGG
TGGAGGAAAGGAGAGGGAGGATGCCACAGTGCTTTCTGCTGGGGTGGAAG
ACGAGTCTTCGTCAGTTGGGAATGGGGATGGGAATGGGGATGGGGGGGCA
GGGGAGGAGGGAGAGGGTTATGGTAAGGGAGAGGTTGTGGTGGAGGAAAA
GAAGAAGGGGGAAAGGGGAGAGGAGGAGAAAGATGAGATGGTGGATGAAA
AGAGGAGGAAGGAGAGGGATGAGGAGGAGGGGGGGGAGGAGGAGGAGGGG
GGGGTCACCTAA
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Synonyms
Publications