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Properties
| Property Name | Value |
|---|
| TranscriptId | 628816 |
| Track | FilteredModels2 |
| ProteinId | 628730 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_5 | supercontig | scaffold_5:1077955..1080134 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_2744 ID=mRNA_2744|Name=jgi.p|Nanoce1779_2|628730|organism=Nannochloropsis oceanica|type=mRNA|length=1526bp
AGCAAACAGCACATTGGTGTCAGGCAAGGCAGGGCATTTTATAGCTAGAG
AACTTTCCTGCCTGCCGCCCTACCATCCTCCTCCCTCACCTCCCCCCTCG
GCCAACCTCAATGCCTCTTCTACGTCCCCGGCCGTCATCACCCCTGCCCG
TCCCTTTCCTCGTGCTCCTCATTCCTCTTCTCTGCTCTCTGACTGTGGTC
ACGCCGCAAGACGACCCCAACGACGAGTTTACGGACCGGAAACCTCCACT
TTCCTCCTCTATCTCCTCCTCCTCCTCTTTCCCTCCCTCTCTCCCTCCCC
CTTCCTCCGCAAGTCTTTACATCTACGAGCTCTGCATGCTCCTACTCCTC
GTCTGGTATTTTCTCAACTACTTATGGGGATGTCGCGAGAACGAACGGAT
CAAGATCTTGTTTCTGAAGGAGTTTGAAGGCCTTTTTCGCGAGCAATTCG
CCCATGTTGGCCCGGGGTGTGTGAGTGGCATGGACGGGAACGGTGGGTGG
GGAAATGGTAGTAGCCTGGACGAAGTAGGAGAGAAGGAGGCCCACAATGG
AGAGGAAAAGAAGGGGTTGGTCATGCACAAGGACTCAAATTCCTCCTTCC
AGCTGTGGGCCTCCGGTCGTCGGCATGTTCCAAGAGGGATGGCCATCACC
CTAGACCTGCAGAAAAGACACGACCTCTTCACGAAGCTATGGGAAAGGTT
CTTCCCGTCAGAGGACGTCATCACCCTCGAAGCGGGCCTCAACCCTGAGG
AGGTGGCGCCCTTTGTCCTCGCCCTCTCCCGGCGCCTGCACCACCGCTCC
CTCCACCTTACTACCCCCGACATCTTCAACTACACCACCCTCCTCCTCCT
ACCCGTCCTCCTTCCCGCCCTCGACACGGCCCATTTCGTCGTCTACGCGG
ACAACGACGCCGTCGTGCCCCTCGTCCTCCCTCCTGCCCTCACCCGCGTC
TTGGAGGAGCACAAACCTTGGTTCGAAAGGATACACGTCAGTGATCAGAA
CACGACCCCTGTAGGGGGACACCCCTTCCTCCCCCCCGTCATCCTTCGCG
CCCGTTTCCTGGTCCCCACCAACGAAGCCGACATGCACACGCACCTTCGG
CCGTTGCTTTCCCTTGTCTTTGAGCTCTTGGATCACGTGGCAGGGGGAAA
GGTACGGCTGTCGGAGGCCGCGCGGAGAAGAAGTAAAGAGGTGCGGGCCG
TGATCGAGGCCAAGAAGCTGATGGAGCTGCAGAAGGCCCACCAGCAGGAG
AGGGAGTGGAAGAAGAGGGAGAAGCAACGGAGGGAACAGGAGGCATATGC
GCGCTTGACGCCGGAACAAAAGCGGCGGAAAGAGGAAAAAGACGCCAAGA
AAAAGAGACACGAGGAAGCGAAGAGGTGGGCGAGGACACACATGAGCTAG
CAAAGTGGTTGCACCAGGGAGGGAGGGTGATGTGTGATGGTGAAAGAGAG
AAGTGACAGCAAATGGTAGCAAAGAACATTTAGAAATATAAAGTGTGAAA
GAAAGGGAATGCGTGCAAGTGCGTCT back to topprotein sequence of jgi.p|Nanoce1779_2|628730 >mRNA_2744-protein ID=mRNA_2744-protein|Name=jgi.p|Nanoce1779_2|628730|organism=Nannochloropsis oceanica|type=polypeptide|length=430bp
MPLLRPRPSSPLPVPFLVLLIPLLCSLTVVTPQDDPNDEFTDRKPPLSSS
ISSSSSFPPSLPPPSSASLYIYELCMLLLLVWYFLNYLWGCRENERIKIL
FLKEFEGLFREQFAHVGPGCVSGMDGNGGWGNGSSLDEVGEKEAHNGEEK
KGLVMHKDSNSSFQLWASGRRHVPRGMAITLDLQKRHDLFTKLWERFFPS
EDVITLEAGLNPEEVAPFVLALSRRLHHRSLHLTTPDIFNYTTLLLLPVL
LPALDTAHFVVYADNDAVVPLVLPPALTRVLEEHKPWFERIHVSDQNTTP
VGGHPFLPPVILRARFLVPTNEADMHTHLRPLLSLVFELLDHVAGGKVRL
SEAARRRSKEVRAVIEAKKLMELQKAHQQEREWKKREKQRREQEAYARLT
PEQKRRKEEKDAKKKRHEEAKRWARTHMS* back to topmRNA from alignment at scaffold_5:1077955..1080134- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_2744 ID=mRNA_2744|Name=jgi.p|Nanoce1779_2|628730|organism=Nannochloropsis oceanica|type=mRNA|length=2180bp|location=Sequence derived from alignment at scaffold_5:1077955..1080134- (Nannochloropsis oceanica)
AGCAAACAGCACATTGGTGTCAGGCAAGGCAGGGCATTTTATAGCTAGAG
AACTTTCCTGCCTGCCGCCCTACCATCCTCCTCCCTCACCTCCCCCCTCG
GCCAACCTCAATGCCTCTTCTACGTCCCCGGCCGTCATCACCCCTGCCCG
TCCCTTTCCTCGTGCTCCTCATTCCTCTTCTCTGCTCTCTGACTGTGGTC
ACGCCGCAAGACGACCCCAACGACGAGTTTACGGACCGGAAACCTCCACT
TTCCTCCTCTATCTCCTCCTCCTCCTCTTTCCCTCCCTCTCTCCCTCCCC
CTTCCTCCGCAAGTCTTTACATCTACGAGCTCTGCATGCTCCTACTCCTC
GTCTGGTATTTTCTCAACTACTTATGGGGATGTCGCGAGAACGAACGGAT
CAAGATCTTGTTTCTGAAGGAGTTTGAAGGCCTTTTTCGCGAGCAATTCG
CCCATGTTGGCCCGGGGTGTGTGAGTGGCATGGACGGGAACGGTGGGTGG
GGAAATGGTAGTAGCCTGGACGAAGTAGGAGAGAAGGAGGCCCACAATGG
AGAGGAAAAGAAGGGGTTGGTCATGCACAAGGTACGATTAGGCGACAGGA
AAGGAATGTGTCGTATATCGCCGCCGTTTTCATCACTTTCTGACTGTGGA
ATTTAGCTCCCTCTTTCCCCTCCCACCTCCCCCTGGCCAGACTCCATATA
ATATTTCCAGCCTCAGGCCCATGCCTTTTGACACGTACGAGGATACGAAA
AACCACCCACTAAATTCCTCTTCATTCCTCCCTCCCTCCCACCCGTCCTT
CCCTCCCTCCCTCCCTCCCTTCCCCCCCCTTGTCCAGGACTCAAATTCCT
CCTTCCAGCTGTGGGCCTCCGGTCGTCGGCATGTTCCAAGAGGGATGGCC
ATCACCCTAGACCTGCAGAAAAGACACGACCTCTTCACGAAGCTATGGGA
AAGGTTCTTCCCGTCAGAGGTGAGGAAGGAAAAAGGGAGGGAGGGAGGGA
GGGCGGTCGTGTGCAGCATGTAAAGGTGGAAGTGAATAGACATAGAGCCT
CCGATGAATCAGGGCTTATTCATTTCTTACAGATACATGAACACCCTCCT
TCCCTCCCTCCTCCCTCCCTTCTTTCCCTCAGGACGTCATCACCCTCGAA
GCGGGCCTCAACCCTGAGGAGGTGGCGCCCTTTGTCCTCGCCCTCTCCCG
GCGCCTGCACCACCGCTCCCTCCACCTTACTACCCCCGACATCTTCAACT
ACACCACCCTCCTCCTCCTACCCGTCCTCCTTCCCGCCCTCGACACGGCC
CATTTCGTCGTCTACGCGGACAACGACGCCGTCGTGCCCCTCGTCCTCCC
TCCTGCCCTCACCCGCGTCTTGGAGGAGCACAAACCTTGGTTCGAAAGGA
TACACGTCAGTGATCAGAACACGACCCCTGTAGGGTAAGGAGGGAGGGAG
GGAGGGAGGGAGGGAGGAGAATTCACGGTCGGTGAGTTGGGACCGACGAC
TTGGCCCCCAAGAAAAGAAAAATGTGAATCTTCAGCACCTTCATCAGTAT
CCTCCTCCTCTTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTGTCCG
CTTCCAAACTCACAAGGCGCACTCTCCCCCCTCCTCCCCTTTCCATTCCT
CCCTCCCTCCACTCTACAGGGGACACCCCTTCCTCCCCCCCGTCATCCTT
CGCGCCCGTTTCCTGGTCCCCACCAACGAAGCCGACATGCACACGCACCT
TCGGCCGTTGCTTTCCCTTGTCTTTGAGCTCTTGGATCACGTGGCAGGGG
GAAAGGTACGGCTGTCGGAGGCCGCGCGGAGAAGAAGTAAAGAGGTGCGG
GCCGTGATCGAGGCCAAGAAGCTGATGGAGCTGCAGAAGGCCCACCAGCA
GGAGAGGGAGTGGAAGAAGAGGGAGAAGCAACGGAGGGAACAGGAGGCAT
ATGCGCGCTTGACGCCGGAACAAAAGCGGCGGAAAGAGGAAAAAGACGCC
AAGAAAAAGAGACACGAGGAAGCGAAGAGGTGGGCGAGGACACACATGAG
CTAGCAAAGTGGTTGCACCAGGGAGGGAGGGTGATGTGTGATGGTGAAAG
AGAGAAGTGACAGCAAATGGTAGCAAAGAACATTTAGAAATATAAAGTGT
GAAAGAAAGGGAATGCGTGCAAGTGCGTCT back to topCoding sequence (CDS) from alignment at scaffold_5:1077955..1080134- >mRNA_2744 ID=mRNA_2744|Name=jgi.p|Nanoce1779_2|628730|organism=Nannochloropsis oceanica|type=CDS|length=5160bp|location=Sequence derived from alignment at scaffold_5:1077955..1080134- (Nannochloropsis oceanica)
GGGACACCCCTTCCTCCCCCCCGTCATCCTTCGCGCCCGTTTCCTGGTCC
CCACCAACGAAGCCGACATGCACACGCACCTTCGGCCGTTGCTTTCCCTT
GTCTTTGAGCTCTTGGATCACGTGGCAGGGGGAAAGGTACGGCTGTCGGA
GGCCGCGCGGAGAAGAAGTAAAGAGGTGCGGGCCGTGATCGAGGCCAAGA
AGCTGATGGAGCTGCAGAAGGCCCACCAGCAGGAGAGGGAGTGGAAGAAG
AGGGAGAAGCAACGGAGGGAACAGGAGGCATATGCGCGCTTGACGCCGGA
ACAAAAGCGGCGGAAAGAGGAAAAAGACGCCAAGAAAAAGAGACACGAGG
AAGCGAAGAGGTGGGCGAGGACACACATGAGCTAGGACGTCATCACCCTC
GAAGCGGGCCTCAACCCTGAGGAGGTGGCGCCCTTTGTCCTCGCCCTCTC
CCGGCGCCTGCACCACCGCTCCCTCCACCTTACTACCCCCGACATCTTCA
ACTACACCACCCTCCTCCTCCTACCCGTCCTCCTTCCCGCCCTCGACACG
GCCCATTTCGTCGTCTACGCGGACAACGACGCCGTCGTGCCCCTCGTCCT
CCCTCCTGCCCTCACCCGCGTCTTGGAGGAGCACAAACCTTGGTTCGAAA
GGATACACGTCAGTGATCAGAACACGACCCCTGTAGGGACTCAAATTCCT
CCTTCCAGCTGTGGGCCTCCGGTCGTCGGCATGTTCCAAGAGGGATGGCC
ATCACCCTAGACCTGCAGAAAAGACACGACCTCTTCACGAAGCTATGGGA
AAGGTTCTTCCCGTCAGAGATGCCTCTTCTACGTCCCCGGCCGTCATCAC
CCCTGCCCGTCCCTTTCCTCGTGCTCCTCATTCCTCTTCTCTGCTCTCTG
ACTGTGGTCACGCCGCAAGACGACCCCAACGACGAGTTTACGGACCGGAA
ACCTCCACTTTCCTCCTCTATCTCCTCCTCCTCCTCTTTCCCTCCCTCTC
TCCCTCCCCCTTCCTCCGCAAGTCTTTACATCTACGAGCTCTGCATGCTC
CTACTCCTCGTCTGGTATTTTCTCAACTACTTATGGGGATGTCGCGAGAA
CGAACGGATCAAGATCTTGTTTCTGAAGGAGTTTGAAGGCCTTTTTCGCG
AGCAATTCGCCCATGTTGGCCCGGGGTGTGTGAGTGGCATGGACGGGAAC
GGTGGGTGGGGAAATGGTAGTAGCCTGGACGAAGTAGGAGAGAAGGAGGC
CCACAATGGAGAGGAAAAGAAGGGGTTGGTCATGCACAAGGGGACACCCC
TTCCTCCCCCCCGTCATCCTTCGCGCCCGTTTCCTGGTCCCCACCAACGA
AGCCGACATGCACACGCACCTTCGGCCGTTGCTTTCCCTTGTCTTTGAGC
TCTTGGATCACGTGGCAGGGGGAAAGGTACGGCTGTCGGAGGCCGCGCGG
AGAAGAAGTAAAGAGGTGCGGGCCGTGATCGAGGCCAAGAAGCTGATGGA
GCTGCAGAAGGCCCACCAGCAGGAGAGGGAGTGGAAGAAGAGGGAGAAGC
AACGGAGGGAACAGGAGGCATATGCGCGCTTGACGCCGGAACAAAAGCGG
CGGAAAGAGGAAAAAGACGCCAAGAAAAAGAGACACGAGGAAGCGAAGAG
GTGGGCGAGGACACACATGAGCTAGGACGTCATCACCCTCGAAGCGGGCC
TCAACCCTGAGGAGGTGGCGCCCTTTGTCCTCGCCCTCTCCCGGCGCCTG
CACCACCGCTCCCTCCACCTTACTACCCCCGACATCTTCAACTACACCAC
CCTCCTCCTCCTACCCGTCCTCCTTCCCGCCCTCGACACGGCCCATTTCG
TCGTCTACGCGGACAACGACGCCGTCGTGCCCCTCGTCCTCCCTCCTGCC
CTCACCCGCGTCTTGGAGGAGCACAAACCTTGGTTCGAAAGGATACACGT
CAGTGATCAGAACACGACCCCTGTAGGGACTCAAATTCCTCCTTCCAGCT
GTGGGCCTCCGGTCGTCGGCATGTTCCAAGAGGGATGGCCATCACCCTAG
ACCTGCAGAAAAGACACGACCTCTTCACGAAGCTATGGGAAAGGTTCTTC
CCGTCAGAGATGCCTCTTCTACGTCCCCGGCCGTCATCACCCCTGCCCGT
CCCTTTCCTCGTGCTCCTCATTCCTCTTCTCTGCTCTCTGACTGTGGTCA
CGCCGCAAGACGACCCCAACGACGAGTTTACGGACCGGAAACCTCCACTT
TCCTCCTCTATCTCCTCCTCCTCCTCTTTCCCTCCCTCTCTCCCTCCCCC
TTCCTCCGCAAGTCTTTACATCTACGAGCTCTGCATGCTCCTACTCCTCG
TCTGGTATTTTCTCAACTACTTATGGGGATGTCGCGAGAACGAACGGATC
AAGATCTTGTTTCTGAAGGAGTTTGAAGGCCTTTTTCGCGAGCAATTCGC
CCATGTTGGCCCGGGGTGTGTGAGTGGCATGGACGGGAACGGTGGGTGGG
GAAATGGTAGTAGCCTGGACGAAGTAGGAGAGAAGGAGGCCCACAATGGA
GAGGAAAAGAAGGGGTTGGTCATGCACAAGGGGACACCCCTTCCTCCCCC
CCGTCATCCTTCGCGCCCGTTTCCTGGTCCCCACCAACGAAGCCGACATG
CACACGCACCTTCGGCCGTTGCTTTCCCTTGTCTTTGAGCTCTTGGATCA
CGTGGCAGGGGGAAAGGTACGGCTGTCGGAGGCCGCGCGGAGAAGAAGTA
AAGAGGTGCGGGCCGTGATCGAGGCCAAGAAGCTGATGGAGCTGCAGAAG
GCCCACCAGCAGGAGAGGGAGTGGAAGAAGAGGGAGAAGCAACGGAGGGA
ACAGGAGGCATATGCGCGCTTGACGCCGGAACAAAAGCGGCGGAAAGAGG
AAAAAGACGCCAAGAAAAAGAGACACGAGGAAGCGAAGAGGTGGGCGAGG
ACACACATGAGCTAGGACGTCATCACCCTCGAAGCGGGCCTCAACCCTGA
GGAGGTGGCGCCCTTTGTCCTCGCCCTCTCCCGGCGCCTGCACCACCGCT
CCCTCCACCTTACTACCCCCGACATCTTCAACTACACCACCCTCCTCCTC
CTACCCGTCCTCCTTCCCGCCCTCGACACGGCCCATTTCGTCGTCTACGC
GGACAACGACGCCGTCGTGCCCCTCGTCCTCCCTCCTGCCCTCACCCGCG
TCTTGGAGGAGCACAAACCTTGGTTCGAAAGGATACACGTCAGTGATCAG
AACACGACCCCTGTAGGGACTCAAATTCCTCCTTCCAGCTGTGGGCCTCC
GGTCGTCGGCATGTTCCAAGAGGGATGGCCATCACCCTAGACCTGCAGAA
AAGACACGACCTCTTCACGAAGCTATGGGAAAGGTTCTTCCCGTCAGAGA
TGCCTCTTCTACGTCCCCGGCCGTCATCACCCCTGCCCGTCCCTTTCCTC
GTGCTCCTCATTCCTCTTCTCTGCTCTCTGACTGTGGTCACGCCGCAAGA
CGACCCCAACGACGAGTTTACGGACCGGAAACCTCCACTTTCCTCCTCTA
TCTCCTCCTCCTCCTCTTTCCCTCCCTCTCTCCCTCCCCCTTCCTCCGCA
AGTCTTTACATCTACGAGCTCTGCATGCTCCTACTCCTCGTCTGGTATTT
TCTCAACTACTTATGGGGATGTCGCGAGAACGAACGGATCAAGATCTTGT
TTCTGAAGGAGTTTGAAGGCCTTTTTCGCGAGCAATTCGCCCATGTTGGC
CCGGGGTGTGTGAGTGGCATGGACGGGAACGGTGGGTGGGGAAATGGTAG
TAGCCTGGACGAAGTAGGAGAGAAGGAGGCCCACAATGGAGAGGAAAAGA
AGGGGTTGGTCATGCACAAGGGGACACCCCTTCCTCCCCCCCGTCATCCT
TCGCGCCCGTTTCCTGGTCCCCACCAACGAAGCCGACATGCACACGCACC
TTCGGCCGTTGCTTTCCCTTGTCTTTGAGCTCTTGGATCACGTGGCAGGG
GGAAAGGTACGGCTGTCGGAGGCCGCGCGGAGAAGAAGTAAAGAGGTGCG
GGCCGTGATCGAGGCCAAGAAGCTGATGGAGCTGCAGAAGGCCCACCAGC
AGGAGAGGGAGTGGAAGAAGAGGGAGAAGCAACGGAGGGAACAGGAGGCA
TATGCGCGCTTGACGCCGGAACAAAAGCGGCGGAAAGAGGAAAAAGACGC
CAAGAAAAAGAGACACGAGGAAGCGAAGAGGTGGGCGAGGACACACATGA
GCTAGGACGTCATCACCCTCGAAGCGGGCCTCAACCCTGAGGAGGTGGCG
CCCTTTGTCCTCGCCCTCTCCCGGCGCCTGCACCACCGCTCCCTCCACCT
TACTACCCCCGACATCTTCAACTACACCACCCTCCTCCTCCTACCCGTCC
TCCTTCCCGCCCTCGACACGGCCCATTTCGTCGTCTACGCGGACAACGAC
GCCGTCGTGCCCCTCGTCCTCCCTCCTGCCCTCACCCGCGTCTTGGAGGA
GCACAAACCTTGGTTCGAAAGGATACACGTCAGTGATCAGAACACGACCC
CTGTAGGGACTCAAATTCCTCCTTCCAGCTGTGGGCCTCCGGTCGTCGGC
ATGTTCCAAGAGGGATGGCCATCACCCTAGACCTGCAGAAAAGACACGAC
CTCTTCACGAAGCTATGGGAAAGGTTCTTCCCGTCAGAGATGCCTCTTCT
ACGTCCCCGGCCGTCATCACCCCTGCCCGTCCCTTTCCTCGTGCTCCTCA
TTCCTCTTCTCTGCTCTCTGACTGTGGTCACGCCGCAAGACGACCCCAAC
GACGAGTTTACGGACCGGAAACCTCCACTTTCCTCCTCTATCTCCTCCTC
CTCCTCTTTCCCTCCCTCTCTCCCTCCCCCTTCCTCCGCAAGTCTTTACA
TCTACGAGCTCTGCATGCTCCTACTCCTCGTCTGGTATTTTCTCAACTAC
TTATGGGGATGTCGCGAGAACGAACGGATCAAGATCTTGTTTCTGAAGGA
GTTTGAAGGCCTTTTTCGCGAGCAATTCGCCCATGTTGGCCCGGGGTGTG
TGAGTGGCATGGACGGGAACGGTGGGTGGGGAAATGGTAGTAGCCTGGAC
GAAGTAGGAGAGAAGGAGGCCCACAATGGAGAGGAAAAGAAGGGGTTGGT
CATGCACAAG back to top
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