jgi.p|Nanoce1779_2|581367, mRNA_2743 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|581367
Unique NamemRNA_2743
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1522
Alignment locationscaffold_5:1074275..1077029 -

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Properties
Property NameValue
TranscriptId581453
TrackFilteredModels2
ProteinId581367
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:1074275..1077029 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|581367gene_2743Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|581367mRNA_2743-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2743CDS_2743Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2743 ID=mRNA_2743|Name=jgi.p|Nanoce1779_2|581367|organism=Nannochloropsis oceanica|type=mRNA|length=1522bp
ACAGGCGCCTCCCACCAAGCGCGGCATTTAGAGAGAGAGAGAGCCATGCC
GTTCCGGCTCAATCGCTGGGGCGGGGTTCACAATGAAGAGGTGGATAGGA
AAGCCATCATGGGGTTGAAAATCTTGCTGCTGGTCGCAATTCCAACCGTC
ATGGCCTCGACGGTTTTTGCCGGCATGTACGCCTGGATCCAAGGGCGGCA
GTACGGATACACAGTCGAAGATTGGCAACGGTGCCTGGTCGCCCCCAACA
AAGGAGGCTTTGGCGTTGGGGACCAGACTCTCTTCACGGGATCAGCGGCG
ACGTTCGCCATGAAGGCCATCGTCTTTCTCATCCTCTCCTTCAACGGCGT
CAATGCTGGGCTGATGGACCACGACATGCTGCCCTACGCTCTCTTTGTCT
CCTTTTCAGGCCTCCTGGGAATGACGATCTATCGCGAATCGTCCCCTATT
CAACCTGAGCCTCGTGCCATGAGCGTCACTCTCGTCACGCTCACAAAATT
CATCCATCCCCACATGTATGCCGATTTCCCCGTGTATCAAGCTCAGCCTG
ACCCGAGTCTGTGTGTGCATGCCTATCACTTTAATCTGGCCTTCTTGGTG
TCACAATACATCATGCTTCTGATGGCGGTCGGGCTTTTTTCGATTGCCGT
TTACACGCTCGTGTATTCCCCGAGGGATTATCTCGACACGCGGCTGGATG
GTTCTAGGAATGCCATGTTGCTGGTACCTGTGATTATGACGGGTTATGTG
CTTACCTTGCTGGCCAAGGAGATCGTGGCGGTGGACACGATGCAGGTCCT
CCAAGATTCCCAGCTAGGCTACATGTTCATGTTCAAGAAAGCCGATATGG
ATGTGATATCGATGACTATGATGGTCACATGCGGTGCTGTCTTGGTCGGC
TCCTTCCACGAGTGCAAGAACAAGTTCAGATTAGCCTCTTTCATGGCGTT
TTTGCACGTCCTCATCTCCCTCCCCGTCATGGCGGGGACCTTCGCAGCTT
ACGACTCATTGACTTACCCCTACAAGGGCAGCACGTACCGGCTCTGGGAG
ACAGTATCCTGCAAGACGTACATCAACACCAAGAATCTGGGCATCTTCGG
TGATTATCCAGGCGAGCTAAACGAGATCTGTCGGGAGGTTCAACTCTCGC
TCGTCGGACAGACTATCATCTTCCTGGCCATGTTCTTCCAGATGATCTGC
TGCCTCCGCGTCGTCCTCACCAACGAAGGTCCCGTCCGTCCTCCTCACGA
GACACGGTGCATGTCCTGCGCATACCGGCAAGAAAGCGAGGGTCTGTTAT
CCTTTGTGCGGCAGCCCACCATTATGGGGTCTCTGTCCATGTACGCACGG
CCCTCCTCCTTCTCACCCTCGCATAAAGCGTCACCGTATCGATTGAGGCC
GGGGGAGGGTGAGGGGGGGGGAGGGATGGACCGACCGTTATTGTCGGAGT
GGGGGAACAGCAGTGAAGAGAGCGAGGAGGACACGCGAGAGGAGAGGGGA
AGGAGGAGGGTTGGAAAGAGGA
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protein sequence of jgi.p|Nanoce1779_2|581367

>mRNA_2743-protein ID=mRNA_2743-protein|Name=jgi.p|Nanoce1779_2|581367|organism=Nannochloropsis oceanica|type=polypeptide|length=220bp
MPFRLNRWGGVHNEEVDRKAIMGLKILLLVAIPTVMASTVFAGMYAWIQG
RQYGYTVEDWQRCLVAPNKGGFGVGDQTLFTGSAATFAMKAIVFLILSFN
GVNAGLMDHDMLPYALFVSFSGLLGMTIYRESSPIQPEPRAMSVTLVTLT
KFIHPHMYADFPVYQAQPDPSLCVHAYHFNLAFLVSQYIMLLMAVGLFSI
AVYTLVYSPRDYLDTRLDGS
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mRNA from alignment at scaffold_5:1074275..1077029-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2743 ID=mRNA_2743|Name=jgi.p|Nanoce1779_2|581367|organism=Nannochloropsis oceanica|type=mRNA|length=2755bp|location=Sequence derived from alignment at scaffold_5:1074275..1077029- (Nannochloropsis oceanica)
ACAGGCGCCTCCCACCAAGCGCGGCATTTAGAGAGAGAGAGAGCCATGCC
GTTCCGGCTCAATCGCTGGGGCGGGGTTCACAATGAAGAGGTGGATAGGA
AAGCCATCATGGGGTTGAAAATCTTGCTGCTGGTCGCAATTCCAACCGTC
ATGGCCTCGACGGTTTTTGCCGGCATGTACGCCTGGATCCAAGGGCGGCA
GTACGGATACACAGTCGAAGATTGGCAACGGTGCCTGGTCGCCCCCAACA
AAGGAGGCTTTGGCGTTGGGGACCAGACTCTCTTCACGGGATCAGCGGTG
CGCGAGGGAGAGGAAGGGTGGAGGGAGAGGGAGGAGGGAGAGGAAGCATC
TCATGATGTAATCGTTTCGTGTCGTCCAATGATGCTATGTCGTCACAGGA
ATTAAACCTCGCTGTTTCCCTCTTGTCCATACGAGATTTTCTCAAAGCTT
GTCCCCCCCACCCCACTCACCACTCCCCGCTCCGTTACTTCCTCCCCTCC
CCCCCTCCCTCGACACCTACAGGCGACGTTCGCCATGAAGGCCATCGTCT
TTCTCATCCTCTCCTTCAACGGCGTCAATGCTGGGCTGATGGACCACGAC
ATGCTGCCCTACGCTCTCTTTGTCTCCTTTTCAGGCCTCCTGGGAATGAC
GATCTATCGCGAATCGTCCCCTATTCAACCTGAGCCTCGTGCCATGAGCG
TCACTCTCGTCACGCTCACAAAATTCATCCATCCCCACATGTATGCCGAT
TTCCCCGTGTATCAAGCTCAGCCTGACCCGAGTCTGTGTGTGCATGCCTA
TCACTTTAATCTGGCCTTCTTGGTGTCACAATACATCATGCTTCTGATGG
CGGTCGGGCTTTTTTCGATTGCCGTTTACACGCTCGTGTATTCCCCGAGG
GATTATCTCGACACGCGGCTGGATGGTTCTAGGAATGCCATGTTGCTGGT
ACCTGTGATTATGACGGGTTATGTGCTTACCTTGCTGGCCAAGGAGATCG
TGGCGGTGGACACGATGCAGGTAGGTAGGGAGGGAGGGAGGGAGGGAGGG
CTATGCCATGTGACATGGGAAGCTTTGTTTTCACTCCCTCCCTCCCTCCC
TCCCTTCCTCTTTCTCCCCCTCAACAGGTCCTCCAAGATTCCCAGCTAGG
CTACATGTTCATGTTCAAGAAAGCCGATATGGGTACGCCCCTCCCTCCCT
CCCCTCCCTCCCTCCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCT
CCCTTCCTCCCTTCCTCCCTCCCTCCCTTCCTCCTTCCTTCCTTCCTCAA
CTCCCTCTCCCCCCTTTTCTCATTCTTTCATCAACCTTCTCTCCCTCGCC
ACTTCCTTTCACGTCAATCCCCACTCCCCTTTCCCCTCCCTCCTTCCCTC
CTTCCCCTCAGATGTGATATCGATGACTATGATGGTCACATGCGGTGCTG
TCTTGGTCGGCTCCTTCCACGAGTGCAAGAACAAGTTCAGATTAGCCTCT
TTCATGGCGTTTTTGCACGTACGGGAGGGAGGGAGGGAGGGAGGGAGGGA
GGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGCGAGAAG
GCGGGAGAGAAATCTGGCAAGAGGAACGAGGGAGGGAGGGAGGGAGGGAG
GGAGGGAGGGAGGGAAGGAGTGCAGGAAGGGAAGAGAGGAAAGGCCAAGC
AATTATTCATTTGTGCCATCTATCACTCCCTCTGATTCGCACCCCCCCTC
CCTCCCTCCCTCCCTCCTTCCCTCCTCGCTTCCCGTAGGTCCTCATCTCC
CTCCCCGTCATGGCGGGGACCTTCGCAGCTTACGACTCATTGACTTACCC
CTACAAGGGCAGCACGTACCGGCTCTGGGAGACAGTATCCTGCAAGACGT
ACATCAACACCAAGAATCTGGTGAGCACGGGAGGGAGGGAGGGAGGGAGG
GAGGGAGGGAAATAAAATGAGCGACGGGGATTTGATTTGGTGCATGTACT
CAATCCCCCTCCCCTCCCTCCTGTCCATCATTCACCCTCTCTCCCTCTCT
CCCTCTTTACTTCCCTCCCTCCCTCCCTCTCTGTGCTCCCTCTGCCACTC
TCTCACCTCTTCTCCTTCCCCCCCCCCCCCCGCTCTCTCCAGGGCATCTT
CGGTGATTATCCAGGCGAGCTAAACGAGATCTGTCGGGAGGTTCAACTCT
CGCTCGTCGGACAGACTATCATGTAAGAAAAGAGGGAGGGAGGGGGGGAG
GGAGGGAGAGGAGCGAAAAAGAGGGCAAAATCGAAGGGGGTTAACACCTG
GCTTGTTCTCATACCGTACTCCCCCTTCCCTCCCCCCCTCCCTCCCTCCC
TCCCTCCCTCCCTCCCTCCCTCCCTCTTTCCCTCCCTCTCTCCCCCTCCC
AGCTTCCTGGCCATGTTCTTCCAGATGATCTGCTGCCTCCGCGTCGTCCT
CACCAACGAAGGTCCCGTCCGTCCTCCTCACGAGACACGGTGCATGTCCT
GCGCATACCGGCAAGAAAGCGAGGGTCTGTTATCCTTTGTGCGGCAGCCC
ACCATTATGGGGTCTCTGTCCATGTACGCACGGCCCTCCTCCTTCTCACC
CTCGCATAAAGCGTCACCGTATCGATTGAGGCCGGGGGAGGGTGAGGGGG
GGGGAGGGATGGACCGACCGTTATTGTCGGAGTGGGGGAACAGCAGTGAA
GAGAGCGAGGAGGACACGCGAGAGGAGAGGGGAAGGAGGAGGGTTGGAAA
GAGGA
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Coding sequence (CDS) from alignment at scaffold_5:1074275..1077029-

>mRNA_2743 ID=mRNA_2743|Name=jgi.p|Nanoce1779_2|581367|organism=Nannochloropsis oceanica|type=CDS|length=1324bp|location=Sequence derived from alignment at scaffold_5:1074275..1077029- (Nannochloropsis oceanica)
GCGACGTTCGCCATGAAGGCCATCGTCTTTCTCATCCTCTCCTTCAACGG
CGTCAATGCTGGGCTGATGGACCACGACATGCTGCCCTACGCTCTCTTTG
TCTCCTTTTCAGGCCTCCTGGGAATGACGATCTATCGCGAATCGTCCCCT
ATTCAACCTGAGCCTCGTGCCATGAGCGTCACTCTCGTCACGCTCACAAA
ATTCATCCATCCCCACATGTATGCCGATTTCCCCGTGTATCAAGCTCAGC
CTGACCCGAGTCTGTGTGTGCATGCCTATCACTTTAATCTGGCCTTCTTG
GTGTCACAATACATCATGCTTCTGATGGCGGTCGGGCTTTTTTCGATTGC
CGTTTACACGCTCGTGTATTCCCCGAGGGATTATCTCGACACGCGGCTGG
ATGGTTCTAGATGCCGTTCCGGCTCAATCGCTGGGGCGGGGTTCACAATG
AAGAGGTGGATAGGAAAGCCATCATGGGGTTGAAAATCTTGCTGCTGGTC
GCAATTCCAACCGTCATGGCCTCGACGGTTTTTGCCGGCATGTACGCCTG
GATCCAAGGGCGGCAGTACGGATACACAGTCGAAGATTGGCAACGGTGCC
TGGTCGCCCCCAACAAAGGAGGCTTTGGCGTTGGGGACCAGACTCTCTTC
ACGGGATCAGCGGCGACGTTCGCCATGAAGGCCATCGTCTTTCTCATCCT
CTCCTTCAACGGCGTCAATGCTGGGCTGATGGACCACGACATGCTGCCCT
ACGCTCTCTTTGTCTCCTTTTCAGGCCTCCTGGGAATGACGATCTATCGC
GAATCGTCCCCTATTCAACCTGAGCCTCGTGCCATGAGCGTCACTCTCGT
CACGCTCACAAAATTCATCCATCCCCACATGTATGCCGATTTCCCCGTGT
ATCAAGCTCAGCCTGACCCGAGTCTGTGTGTGCATGCCTATCACTTTAAT
CTGGCCTTCTTGGTGTCACAATACATCATGCTTCTGATGGCGGTCGGGCT
TTTTTCGATTGCCGTTTACACGCTCGTGTATTCCCCGAGGGATTATCTCG
ACACGCGGCTGGATGGTTCTAGATGCCGTTCCGGCTCAATCGCTGGGGCG
GGGTTCACAATGAAGAGGTGGATAGGAAAGCCATCATGGGGTTGAAAATC
TTGCTGCTGGTCGCAATTCCAACCGTCATGGCCTCGACGGTTTTTGCCGG
CATGTACGCCTGGATCCAAGGGCGGCAGTACGGATACACAGTCGAAGATT
GGCAACGGTGCCTGGTCGCCCCCAACAAAGGAGGCTTTGGCGTTGGGGAC
CAGACTCTCTTCACGGGATCAGCG
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Synonyms
Publications