jgi.p|Nanoce1779_2|525020, mRNA_2742 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|525020
Unique Name	mRNA_2742
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1185
Alignment location	scaffold_5:1072757..1073941 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	525106
Track	FilteredModels2
ProteinId	525020

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_5	supercontig	scaffold_5:1072757..1073941 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|525020	gene_2742	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|525020	mRNA_2742-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2742	CDS_2742	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_5:1072757..1073941+
coding sequence from alignment at scaffold_5:1072757..1073941+

mRNA sequence

>mRNA_2742 ID=mRNA_2742|Name=jgi.p|Nanoce1779_2|525020|organism=Nannochloropsis oceanica|type=mRNA|length=1185bp
ATGTATGGGACGTTGAAACGGCTGGCCGTTGACGATGTAACGTTAGAGCA
TCCGGAGCAAACCCTAGAGCTGCCCTTGACTGAGGCACCGACAGAGGACG
GGAAGGAGGGAGGACGGTCGATTTTCTTGCTGTCAGGTCCCCGAGGATCA
GGGAAAACAGCCTCCTTGTATCACACGGTGCATTATGCGAGGAAGAGCGG
TTGGCTGGTGTTTTTCATCCCCTCGGCATACGAATATCTGCATGAGGGGG
GCTTGGTCCGGCCCTCGCCTTTTTTTAAGGGGTATTTTGATACGCCTGAC
TTGGCGCAGACGACGTTGAGACAGCTGGGGGAGGCCCATGGACATCAGCT
GGCAGGGCTGCCGCTGAAGGATAGGGAGGTGGTGGAGAGGCTGGGCCTGA
AGGAGGGAGGGAGGGAGGGAGGGCCCGAGGGGGCGACTTTGCTGGATTTG
GTGGTGTTGGGCCTGAGTAAAAAGAAGCTGGCCACGACGTGTTTGTTGGA
GCTTAAGCGAGGCATGGAGGAAGGGCAGTCGGTATACCCCGTTCTCTTTG
CCGTGGATGAGTTTTCGGAGTGGTTTTACCCCAGCACCTACCACTATGCA
CAGAAGAAAATCGAGGCCTCGCGCCTCGTTCTCGTGGCCGCTCTCAGGAA
CCTCCTTCCGCCCTCCCCCTCCTCCCCTTCCTACGGGAAGCACCACAAAC
ACATCGCCTTCCTCGCAGCCCGGACGGGGCGGTATCCCCGTCTCTCTCGC
GCCAAAGCCAAGAAAGGTCAAGAAGGCCGCAAGCGTCTTGCCGACCTGCC
CCCCCACCCCCTCCCTCCCTCCCTCCCTGCCTACGACATCCTCCACCCAC
CCTCCTACTCCCCCTCCGAATTCCAAGCCCTTTATCACTTCGTTGCCGAC
CAGGGACTTTGGGGCTCCAGTCCCACGCTGGACGACAGCAGCATCCGGCA
AGCCCGTGTGGCCACGGCGGCTCATCCCCTCACCTTTGCACGGGACGCGG
CAGCGATTGATAGGCGCCTCTTCTCACCGCAGAACAAGGTAGGGAAGGCC
TCGGCCCATGCACCCGCCAATTTCATGTTGGTTGATTTACTGGAGGAGGG
GGGAGGGGGAGGGGAGGAGGGGGGGAGGAAGGACGGAGGGGGGGGAGGGA
CCAGGAGGCAGCAGCAACAGCAGCAGAGGGCGTAA

protein sequence of jgi.p|Nanoce1779_2|525020

>mRNA_2742-protein ID=mRNA_2742-protein|Name=jgi.p|Nanoce1779_2|525020|organism=Nannochloropsis oceanica|type=polypeptide|length=395bp
MYGTLKRLAVDDVTLEHPEQTLELPLTEAPTEDGKEGGRSIFLLSGPRGS
GKTASLYHTVHYARKSGWLVFFIPSAYEYLHEGGLVRPSPFFKGYFDTPD
LAQTTLRQLGEAHGHQLAGLPLKDREVVERLGLKEGGREGGPEGATLLDL
VVLGLSKKKLATTCLLELKRGMEEGQSVYPVLFAVDEFSEWFYPSTYHYA
QKKIEASRLVLVAALRNLLPPSPSSPSYGKHHKHIAFLAARTGRYPRLSR
AKAKKGQEGRKRLADLPPHPLPPSLPAYDILHPPSYSPSEFQALYHFVAD
QGLWGSSPTLDDSSIRQARVATAAHPLTFARDAAAIDRRLFSPQNKVGKA
SAHAPANFMLVDLLEEGGGGGEEGGRKDGGGGGTRRQQQQQQRA*

mRNA from alignment at scaffold_5:1072757..1073941+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2742 ID=mRNA_2742|Name=jgi.p|Nanoce1779_2|525020|organism=Nannochloropsis oceanica|type=mRNA|length=1185bp|location=Sequence derived from alignment at scaffold_5:1072757..1073941+ (Nannochloropsis oceanica)
ATGTATGGGACGTTGAAACGGCTGGCCGTTGACGATGTAACGTTAGAGCA
TCCGGAGCAAACCCTAGAGCTGCCCTTGACTGAGGCACCGACAGAGGACG
GGAAGGAGGGAGGACGGTCGATTTTCTTGCTGTCAGGTCCCCGAGGATCA
GGGAAAACAGCCTCCTTGTATCACACGGTGCATTATGCGAGGAAGAGCGG
TTGGCTGGTGTTTTTCATCCCCTCGGCATACGAATATCTGCATGAGGGGG
GCTTGGTCCGGCCCTCGCCTTTTTTTAAGGGGTATTTTGATACGCCTGAC
TTGGCGCAGACGACGTTGAGACAGCTGGGGGAGGCCCATGGACATCAGCT
GGCAGGGCTGCCGCTGAAGGATAGGGAGGTGGTGGAGAGGCTGGGCCTGA
AGGAGGGAGGGAGGGAGGGAGGGCCCGAGGGGGCGACTTTGCTGGATTTG
GTGGTGTTGGGCCTGAGTAAAAAGAAGCTGGCCACGACGTGTTTGTTGGA
GCTTAAGCGAGGCATGGAGGAAGGGCAGTCGGTATACCCCGTTCTCTTTG
CCGTGGATGAGTTTTCGGAGTGGTTTTACCCCAGCACCTACCACTATGCA
CAGAAGAAAATCGAGGCCTCGCGCCTCGTTCTCGTGGCCGCTCTCAGGAA
CCTCCTTCCGCCCTCCCCCTCCTCCCCTTCCTACGGGAAGCACCACAAAC
ACATCGCCTTCCTCGCAGCCCGGACGGGGCGGTATCCCCGTCTCTCTCGC
GCCAAAGCCAAGAAAGGTCAAGAAGGCCGCAAGCGTCTTGCCGACCTGCC
CCCCCACCCCCTCCCTCCCTCCCTCCCTGCCTACGACATCCTCCACCCAC
CCTCCTACTCCCCCTCCGAATTCCAAGCCCTTTATCACTTCGTTGCCGAC
CAGGGACTTTGGGGCTCCAGTCCCACGCTGGACGACAGCAGCATCCGGCA
AGCCCGTGTGGCCACGGCGGCTCATCCCCTCACCTTTGCACGGGACGCGG
CAGCGATTGATAGGCGCCTCTTCTCACCGCAGAACAAGGTAGGGAAGGCC
TCGGCCCATGCACCCGCCAATTTCATGTTGGTTGATTTACTGGAGGAGGG
GGGAGGGGGAGGGGAGGAGGGGGGGAGGAAGGACGGAGGGGGGGGAGGGA
CCAGGAGGCAGCAGCAACAGCAGCAGAGGGCGTAA

Coding sequence (CDS) from alignment at scaffold_5:1072757..1073941+

>mRNA_2742 ID=mRNA_2742|Name=jgi.p|Nanoce1779_2|525020|organism=Nannochloropsis oceanica|type=CDS|length=1185bp|location=Sequence derived from alignment at scaffold_5:1072757..1073941+ (Nannochloropsis oceanica)
ATGTATGGGACGTTGAAACGGCTGGCCGTTGACGATGTAACGTTAGAGCA
TCCGGAGCAAACCCTAGAGCTGCCCTTGACTGAGGCACCGACAGAGGACG
GGAAGGAGGGAGGACGGTCGATTTTCTTGCTGTCAGGTCCCCGAGGATCA
GGGAAAACAGCCTCCTTGTATCACACGGTGCATTATGCGAGGAAGAGCGG
TTGGCTGGTGTTTTTCATCCCCTCGGCATACGAATATCTGCATGAGGGGG
GCTTGGTCCGGCCCTCGCCTTTTTTTAAGGGGTATTTTGATACGCCTGAC
TTGGCGCAGACGACGTTGAGACAGCTGGGGGAGGCCCATGGACATCAGCT
GGCAGGGCTGCCGCTGAAGGATAGGGAGGTGGTGGAGAGGCTGGGCCTGA
AGGAGGGAGGGAGGGAGGGAGGGCCCGAGGGGGCGACTTTGCTGGATTTG
GTGGTGTTGGGCCTGAGTAAAAAGAAGCTGGCCACGACGTGTTTGTTGGA
GCTTAAGCGAGGCATGGAGGAAGGGCAGTCGGTATACCCCGTTCTCTTTG
CCGTGGATGAGTTTTCGGAGTGGTTTTACCCCAGCACCTACCACTATGCA
CAGAAGAAAATCGAGGCCTCGCGCCTCGTTCTCGTGGCCGCTCTCAGGAA
CCTCCTTCCGCCCTCCCCCTCCTCCCCTTCCTACGGGAAGCACCACAAAC
ACATCGCCTTCCTCGCAGCCCGGACGGGGCGGTATCCCCGTCTCTCTCGC
GCCAAAGCCAAGAAAGGTCAAGAAGGCCGCAAGCGTCTTGCCGACCTGCC
CCCCCACCCCCTCCCTCCCTCCCTCCCTGCCTACGACATCCTCCACCCAC
CCTCCTACTCCCCCTCCGAATTCCAAGCCCTTTATCACTTCGTTGCCGAC
CAGGGACTTTGGGGCTCCAGTCCCACGCTGGACGACAGCAGCATCCGGCA
AGCCCGTGTGGCCACGGCGGCTCATCCCCTCACCTTTGCACGGGACGCGG
CAGCGATTGATAGGCGCCTCTTCTCACCGCAGAACAAGGTAGGGAAGGCC
TCGGCCCATGCACCCGCCAATTTCATGTTGGTTGATTTACTGGAGGAGGG
GGGAGGGGGAGGGGAGGAGGGGGGGAGGAAGGACGGAGGGGGGGGAGGGA
CCAGGAGGCAGCAGCAACAGCAGCAGAGGGCGTAA

Synonyms

Publications