jgi.p|Nanoce1779_2|525453, mRNA_2741 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|525453
Unique NamemRNA_2741
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length705
Alignment locationscaffold_5:1069024..1069835 +

Link to JBrowse

Properties
Property NameValue
TranscriptId525539
TrackFilteredModels2
ProteinId525453
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:1069024..1069835 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|525453gene_2741Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|525453mRNA_2741-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2741CDS_2741Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2741 ID=mRNA_2741|Name=jgi.p|Nanoce1779_2|525453|organism=Nannochloropsis oceanica|type=mRNA|length=705bp
ATGCCTACGGTTGTGGCTCCACTGCGCTCCGACTACCTCGAAGACCTCCC
CGTTTCCAACAAGGGTCCGCCCGTGCAATGGGGTGCGCTTGGGACCTGGG
TTGTGGCCACGGCATTGCAATTTGCCACCATAACGGCGGTCATGGCGTTC
ATGGAAACGGCATTCATCAAGTTGAATGCATCCAAGCAAGTGAGCTTGTG
GGTGGTGCGAGCCTTCTTTGCCTTCATGAGTTTGAGGTCTCGAGTCTTTT
CCATCCTTGACAACTCGCGGCCAAGCGTTGAGAAGGAGGAAAGGAAGCGC
ATCCTCAAGAAACGCCCTTCCTGGATGCCACCGGCCAAGGCCTTTCCAGT
CATCTGGATTTCCATCGGTGTTCTCCGCACCATCGCCTCCTCCCTCATCT
ACCAAACCACCAATACCCTTCTCGCCCCCGCTCTTCTCGCACTCATCCTC
CACCTCTCGATCGGAGATACATGGAACACCATCACGAACGTTGAGGATCG
GCAAGGCGCCTCCGTTCCGGGTGTCTTTCTGGTGTGGCTCTCTGTGGTGA
ACGCCGTCGTTCAGTTCTATGACACCTTGCCTCTGGCGGGAAAGGTCCTG
GCGCCTAGCGCGGTATGGATCACCGTGGCCAATGTGTTGGTATTCTCTAT
ATGGAGGCTGAATGGATCGGAACCTATGTATCCTTTCAGGAAGCGAGAGG
AGTAA
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protein sequence of jgi.p|Nanoce1779_2|525453

>mRNA_2741-protein ID=mRNA_2741-protein|Name=jgi.p|Nanoce1779_2|525453|organism=Nannochloropsis oceanica|type=polypeptide|length=235bp
MPTVVAPLRSDYLEDLPVSNKGPPVQWGALGTWVVATALQFATITAVMAF
METAFIKLNASKQVSLWVVRAFFAFMSLRSRVFSILDNSRPSVEKEERKR
ILKKRPSWMPPAKAFPVIWISIGVLRTIASSLIYQTTNTLLAPALLALIL
HLSIGDTWNTITNVEDRQGASVPGVFLVWLSVVNAVVQFYDTLPLAGKVL
APSAVWITVANVLVFSIWRLNGSEPMYPFRKREE*
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mRNA from alignment at scaffold_5:1069024..1069835+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2741 ID=mRNA_2741|Name=jgi.p|Nanoce1779_2|525453|organism=Nannochloropsis oceanica|type=mRNA|length=812bp|location=Sequence derived from alignment at scaffold_5:1069024..1069835+ (Nannochloropsis oceanica)
ATGCCTACGGTTGTGGCTCCACTGCGCTCCGACTACCTCGAAGACCTCCC
CGTTTCCAACAAGGGTCCGCCCGTGCAATGGGGTGCGCTTGGGACCTGGG
TTGTGGCCACGGCATTGCAATTTGCCACCATAACGGCGGTCATGGCGTTC
ATGGAAACGGCATTCATCAAGTTGAATGCATCCAAGCAAGTGAGCTTGTG
GGTGGTGCGAGCCTTCTTTGCCTTCATGAGTTTGAGGTCTCGAGTCTTTT
CCATCCTTGACAACTCGCGGCCAAGCGTTGAGAAGGAGGAAAGGAAGCGC
ATCCTCAAGAAACGCCCTTCCTGGATGTACGTAATGATCCTGTTAAGCTT
TTTGTCTTTGACCATGTTACACTTTAAATTTATCCTCCTTTCAATTATCT
TTTTGTCCACCCTCCCTCCTTTCTCGTCTTCAGGCCACCGGCCAAGGCCT
TTCCAGTCATCTGGATTTCCATCGGTGTTCTCCGCACCATCGCCTCCTCC
CTCATCTACCAAACCACCAATACCCTTCTCGCCCCCGCTCTTCTCGCACT
CATCCTCCACCTCTCGATCGGAGATACATGGAACACCATCACGAACGTTG
AGGATCGGCAAGGCGCCTCCGTTCCGGGTGTCTTTCTGGTGTGGCTCTCT
GTGGTGAACGCCGTCGTTCAGTTCTATGACACCTTGCCTCTGGCGGGAAA
GGTCCTGGCGCCTAGCGCGGTATGGATCACCGTGGCCAATGTGTTGGTAT
TCTCTATATGGAGGCTGAATGGATCGGAACCTATGTATCCTTTCAGGAAG
CGAGAGGAGTAA
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Coding sequence (CDS) from alignment at scaffold_5:1069024..1069835+

>mRNA_2741 ID=mRNA_2741|Name=jgi.p|Nanoce1779_2|525453|organism=Nannochloropsis oceanica|type=CDS|length=1410bp|location=Sequence derived from alignment at scaffold_5:1069024..1069835+ (Nannochloropsis oceanica)
ATGCCTACGGTTGTGGCTCCACTGCGCTCCGACTACCTCGAAGACCTCCC
CGTTTCCAACAAGGGTCCGCCCGTGCAATGGGGTGCGCTTGGGACCTGGG
TTGTGGCCACGGCATTGCAATTTGCCACCATAACGGCGGTCATGGCGTTC
ATGGAAACGGCATTCATCAAGTTGAATGCATCCAAGCAAGTGAGCTTGTG
GGTGGTGCGAGCCTTCTTTGCCTTCATGAGTTTGAGGTCTCGAGTCTTTT
CCATCCTTGACAACTCGCGGCCAAGCGTTGAGAAGGAGGAAAGGAAGCGC
ATCCTCAAGAAACGCCCTTCCTGGATGCCACCGGCCAAGGCCTTTCCAGT
CATCTGGATTTCCATCGGTGTTCTCCGCACCATCGCCTCCTCCCTCATCT
ACCAAACCACCAATACCCTTCTCGCCCCCGCTCTTCTCGCACTCATCCTC
CACCTCTCGATCGGAGATACATGGAACACCATCACGAACGTTGAGGATCG
GCAAGGCGCCTCCGTTCCGGGTGTCTTTCTGGTGTGGCTCTCTGTGGTGA
ACGCCGTCGTTCAGTTCTATGACACCTTGCCTCTGGCGGGAAAGGTCCTG
GCGCCTAGCGCGGTATGGATCACCGTGGCCAATGTGTTGGTATTCTCTAT
ATGGAGGCTGAATGGATCGGAACCTATGTATCCTTTCAGGAAGCGAGAGG
AGTAAATGCCTACGGTTGTGGCTCCACTGCGCTCCGACTACCTCGAAGAC
CTCCCCGTTTCCAACAAGGGTCCGCCCGTGCAATGGGGTGCGCTTGGGAC
CTGGGTTGTGGCCACGGCATTGCAATTTGCCACCATAACGGCGGTCATGG
CGTTCATGGAAACGGCATTCATCAAGTTGAATGCATCCAAGCAAGTGAGC
TTGTGGGTGGTGCGAGCCTTCTTTGCCTTCATGAGTTTGAGGTCTCGAGT
CTTTTCCATCCTTGACAACTCGCGGCCAAGCGTTGAGAAGGAGGAAAGGA
AGCGCATCCTCAAGAAACGCCCTTCCTGGATGCCACCGGCCAAGGCCTTT
CCAGTCATCTGGATTTCCATCGGTGTTCTCCGCACCATCGCCTCCTCCCT
CATCTACCAAACCACCAATACCCTTCTCGCCCCCGCTCTTCTCGCACTCA
TCCTCCACCTCTCGATCGGAGATACATGGAACACCATCACGAACGTTGAG
GATCGGCAAGGCGCCTCCGTTCCGGGTGTCTTTCTGGTGTGGCTCTCTGT
GGTGAACGCCGTCGTTCAGTTCTATGACACCTTGCCTCTGGCGGGAAAGG
TCCTGGCGCCTAGCGCGGTATGGATCACCGTGGCCAATGTGTTGGTATTC
TCTATATGGAGGCTGAATGGATCGGAACCTATGTATCCTTTCAGGAAGCG
AGAGGAGTAA
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Synonyms
Publications