|
|
Properties
| Property Name | Value |
|---|
| TranscriptId | 338152 |
| Track | FilteredModels2 |
| ProteinId | 338066 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_5 | supercontig | scaffold_5:1065766..1068593 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_2740 ID=mRNA_2740|Name=jgi.p|Nanoce1779_2|338066|organism=Nannochloropsis oceanica|type=mRNA|length=1829bp
CACCATCCCACAATCTACTCCACAGGTACCCTCCGACACAGCCTAGAGAG
GGATGAGTCACGGCCGGCACAGGAAGAAGGGTCAAGGCCTCCATCACCAT
CACGGCACCGCTTCAGGTCCCCTGGGTTTCCTGCCGCCAGGCATCCTTCC
CAGCAGCCTCCCTCCTTCAGGTGCCCCAGGTGCCCCACCTATCAGCACCA
CGGCGGCCGCGGCTGCCGCTGCCGCTGCGTTTCCTCTGCCTGGCTTTGAT
ATTGCTGTAGCACGACCAGAAGAGCAAACCTGTGTGGCTGAATCATGGCA
AGCTATAACTGGACCCGACGCCTTGCTTCCGGATGAGTACGTGAGACTGC
CTTTAGATGAGCTCCAACCAGTCTTCGAAAGGGACTTGAGACGCTTCGCC
GACAAAACCGTAAATCCACGGGAACGCTGTCGTTTAGCACACTATCTCGG
AAATTTTTCTTGCACCGCCTCCGGGCTTTGTATGTATGAAAAGGCCGCTT
GGTACGTCCCTACGCTCTATGCGGTCGTTAAGGAGGTGAAAGACATCTAT
GTGTCCGGTGCCATAGTCCCACGACCTTGCGTGGCAGGCTACGCAATGCT
GGCCTTGACGAGTCTAGTCAAGCAAAGCATGCGTGTGCCATTCCCTTCTT
CCGTCCCTCCTTCCTCGGGGAAGGGGCATGGTCTTCATCCTAATGGGCCG
CATGCCGTGATTGATTATTTGCTTGGCCCGATGGGTTGTGGAGATCATGG
CAACGGTGGCAGTAGCAGCCACAGCGGGAGCAGCGGAAAGCAACAGAGAA
AAAAGGTCCGCGGTAAGCAAGACCGAGGAGCAGCACAGCTGGGAAAAGAA
AACCACGGTAGCCCCCGTGTCCTCTGCATTTGGACGTTGCTCAAGCACGC
TTCGGCCGAAACGGCGCGTTCGCGTGGCGCCCTCCGCACCCTCTCCTGCG
CCCTTGAGCTTCTTACCACCCTCGAACTTGCCTGCATGGGCCGCAACTCT
GCGATCATTCTTTCCCAAAACCACGCCGTCCCTCCCTCCACCCCTCCCCC
CCTGCTAACCCAGCTCTGTACGTTCGAAATGTCCACAGAAGCGACCAAAT
TGATTTTCTTAAAGGCAGCGTCTTTGATCCTGAAACACACACAATCAAGA
GGAGATGTTTGCGGGGTGGCTCAGGCCTTGGGGTTATTCGAGGTTATGGG
AGGAGGGGCGGAGAATAATATTGTTGAGGAAGGGAGGGAGGGATGGAAGG
CGTTCGTCGCGGCGGATGGGGTAATGCCAATGGTGGCGGCGCTGGAAAGC
CTGAAGGACTGGCCGAAGAAGAGGGATGGGAGGAAGCGAAGGAGGAGGAG
AAGGAGGGTGGAGGAAGTTGGAGAGGAAGGGGAGGAATGGTCGACGACGT
TGGAGGAGGAGGAGGAGGACGACGACGACGAGGAGGAAGAGGAGAGTAAA
GAGGTGGACGAGAACGACGAGGAGGAGATCATAAATGTATCAAATGCGCG
TCAGTCAGACCGTTTATCAATCCTTTCCTTCTTCACTGATCTGGGGCCCG
CACACCCTACCCTTATTTTGCCTGCGGTGAGTCAGCTGATCAAATGGGCG
GGTACGGAGGGATGAGGAGAGAAGGAAAGAGGCTGGGAGCGCTGTGCCTG
CTTTGAATAGAGGAAGGAAGCCGACTCCTCCTTGGTTGGAAACTATTTTC
GCTCGTGTGTTCAAGGGAAGCAATGCGACAGCAGAAGGGAGAGAACGGAG
GGGCTGCTTGGCTATCTAAGAATGAGGAGAACTGAAGAGCTGATGGCACA
ATTATCCTTAGTGATGGAGGAGGAGGTTG back to topprotein sequence of jgi.p|Nanoce1779_2|338066 >mRNA_2740-protein ID=mRNA_2740-protein|Name=jgi.p|Nanoce1779_2|338066|organism=Nannochloropsis oceanica|type=polypeptide|length=521bp
MSHGRHRKKGQGLHHHHGTASGPLGFLPPGILPSSLPPSGAPGAPPISTT
AAAAAAAAAFPLPGFDIAVARPEEQTCVAESWQAITGPDALLPDEYVRLP
LDELQPVFERDLRRFADKTVNPRERCRLAHYLGNFSCTASGLCMYEKAAW
YVPTLYAVVKEVKDIYVSGAIVPRPCVAGYAMLALTSLVKQSMRVPFPSS
VPPSSGKGHGLHPNGPHAVIDYLLGPMGCGDHGNGGSSSHSGSSGKQQRK
KVRGKQDRGAAQLGKENHGSPRVLCIWTLLKHASAETARSRGALRTLSCA
LELLTTLELACMGRNSAIILSQNHAVPPSTPPPLLTQLCTFEMSTEATKL
IFLKAASLILKHTQSRGDVCGVAQALGLFEVMGGGAENNIVEEGREGWKA
FVAADGVMPMVAALESLKDWPKKRDGRKRRRRRRRVEEVGEEGEEWSTTL
EEEEEDDDDEEEEESKEVDENDEEEIINVSNARQSDRLSILSFFTDLGPA
HPTLILPAVSQLIKWAGTEG* back to topmRNA from alignment at scaffold_5:1065766..1068593- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_2740 ID=mRNA_2740|Name=jgi.p|Nanoce1779_2|338066|organism=Nannochloropsis oceanica|type=mRNA|length=2828bp|location=Sequence derived from alignment at scaffold_5:1065766..1068593- (Nannochloropsis oceanica)
CACCATCCCACAATCTACTCCACAGGTACCCTCCGACACAGCCTAGAGAG
GGATGAGTCACGGCCGGCACAGGAAGAAGGGTCAAGGCCTCCATCACCAT
CACGGCACCGCTTCAGGTCCCCTGGGTTTCCTGCCGCCAGGCATCCTTCC
CAGCAGCCTCCCTCCTTCAGGTGCCCCAGGTGCCCCACCTATCAGCACCA
CGGCGGCCGCGGCTGCCGCTGCCGCTGCGTTTCCTCTGCCTGGCTTTGAT
ATTGCTGTAGCACGACCAGAAGAGCAAACCTGTGTGGCTGAATCATGGCA
AGCTATAACTGGACCCGACGCCTTGCTTCCGGATGAGTACGTGAGACTGC
CTTTAGATGAGCTCCAACCAGTCTTCGAAAGGGACTTGAGACGCTTCGCC
GACAAAACCGTAAATCCACGGGAACGCTGTCGTTTAGCACACTATCTCGG
AAATTTTTCTTGCACCGCCTCCGGGCTTTGTATGTATGAAAAGGCCGCTT
GGTACGTCCCTACGCTCTATGCGGTCGTTAAGGAGGTGAAAGACATCTAT
GTGTCCGGTGCCATAGTCCCACGACCTTGCGTGGCAGGCTACGCAATGCT
GGCCTTGACGAGTCTAGTCAAGCAAAGCATGCGTGTGCCATTCCCTTCTT
CCGTCCCTCCTTCCTCGGGGAAGGGGCATGGTCTTCATCCTAATGGGCCG
CATGCCGTGATTGATTATTTGCTTGGCCCGATGGGTTGTGGAGATCATGG
CAACGGTGGCAGTAGCAGCCACAGCGGGAGCAGCGGAAAGCAACAGAGAA
AAAAGGTCCGCGGTAAGCAAGACCGAGGAGCAGCACAGCTGGGAAAAGAA
AACCACGGTAGCCCCCGTGTCCTCTGCATTTGGACGTTGCTCAAGCACGC
TTCGGCCGAAACGGCGCGTTCGCGTGGCGCCCTCCGCACCCTCTCCTGCG
CCCTTGAGCTTCTTACCACCCTCGAACTTGCCTGCATGGGCCGCAACTCT
GCGATCATTCTTTCCCAAAACCACGCCGTCCCTCCCTCCACCCCTCCCCC
CCTGCTAACCCAGCTCTGTACGTTCGAAATGTCCACAGAAGCGACCAAAT
TGATTTTCTTAAAGGCAGCGTCTTTGATCCTGAAACACACACAATCAAGA
GGAGATGTTTGCGGGGTGGCTCAGGCCTTGGGGTTATTCGAGGTTATGGG
AGGAGGGGCGGAGAATAATATTGTTGAGGAAGGGAGGGAGGGATGGAAGG
CGTTCGTCGCGGCGGATGGGGTAATGCCAATGGTGGCGGCGCTGGAAAGC
CTGAAGGACTGGCCGAAGAAGAGGGATGGGAGGAAGCGAAGGAGGAGGAG
AAGGAGGGTGGAGGAAGTTGGAGAGGAAGGGGAGGAATGGTCGACGACGT
TGGAGGAGGAGGAGGAGGACGACGACGACGAGGAGGAAGAGGAGAGTAAA
GAGGTGGACGAGAACGACGAGGAGGAGATCATAAATGTATCAAATGCGCG
TCAGTCAGACCGTTTATCAATCCTTTCCTTCTTCACTGATCTGGGGCCCG
CACACCCTACCCTTATTTTGCCTGCGGTGAGTCAGCTGATCAAATGGGCG
GGTACGGAGGGTCCGGCATACGAGCATGAACGGACGTTCGCCCTCCTTTC
TCTCGCGCGGTTTTTGGAGGGAGGGAAAGAGGGAGAGGATGCACGATTTG
CGGCGGAATTGGGTTTGTTTCCTGTAGTGGTTAGGAGGTTGCAGAATTAT
CGGAAGGCGGTGGTGGCGGCGGCGGCGGGGGGGGGGAGGGGGCGACGTAC
GTGTGGATGTTGTAATGGAGGAAGGAAGGGAGATGGTGATGGAGGGGAGA
AGGATGTGGGGGAAGGAGGGGGGCAGCATGGTGAGCTCGTGCCCGCGGCG
TTGGAACTCTTGCTTAGCTTGCTTCTACACTCCGAGAAGTCGCGGCAGGC
GGCGTGTGAAGATGCGGCGGGAGGCGGCCGGTTGTACGTGACATTAAACT
CACTCCTTTACGAGGGAATGCGGGCATCGGAACCAATCCGGAGTCGAGTC
TGTGGACCCCTGCTGGGGGTCCTCGTCCTCCTCGTCCACCCCGTGCACTT
GCCCGTCCTCTCTCAGTCGAGCGGCACGAGCAGACCGTTGAGTCGGGAGG
TGGGCAATGGAGGGGACAATCGTGTCATGATGCAGAGGATCCTCCAACAA
TTATCGTTCCATTCCCAGAAAGACTTAAGGAGCTCGTCTGTGATCTCGTG
TTTGAGGGATATGGTGAGATATAGGAAGTTGACATGTGCTTCGGGAGGGG
TGTGGCGATTAACTGTCCATGTGATTATGATGGCGATGCTGATGGGACCG
GGGGACAAGGAGGGGGAGGGAAGCAGGGAGGAAGAGGGGAGGGAATCGCA
GAGGCTCTTGACGGAATTGCAGTGTGTGTTGAAGATGGTGATGTTGGAGG
AGCAGGAGGAGGGGGAGGAGGATGAGGAGAGAAGGAAAGAGGCTGGGAGC
GCTGTGCCTGCTTTGAATAGAGGAAGGAAGCCGACTCCTCCTTGGTTGGA
AACTATTTTCGCTCGTGTGTTCAAGGGAAGCAATGCGACAGCAGAAGGGA
GAGCGGCAGTAGAGGATAGGGGCGAGGGGCACGAGTCGCTGGAGGTGGGG
ATCGAGTACCTGTCGCTGATGATCTTTCTGGAGAAGGAGGGGGGGAAGGA
GGGAGGGATGGGGGAAGCAGAGGAGATGTTTTGGGAAGGAGGAACGGAGG
GGCTGCTTGGCTATCTAAGAATGAGGAGAACTGAAGAGCTGATGGCACAA
TTATCCTTAGTGATGGAGGAGGAGGTTG back to topCoding sequence (CDS) from alignment at scaffold_5:1065766..1068593- >mRNA_2740 ID=mRNA_2740|Name=jgi.p|Nanoce1779_2|338066|organism=Nannochloropsis oceanica|type=CDS|length=3126bp|location=Sequence derived from alignment at scaffold_5:1065766..1068593- (Nannochloropsis oceanica)
GATGAATGAGTCACGGCCGGCACAGGAAGAAGGGTCAAGGCCTCCATCAC
CATCACGGCACCGCTTCAGGTCCCCTGGGTTTCCTGCCGCCAGGCATCCT
TCCCAGCAGCCTCCCTCCTTCAGGTGCCCCAGGTGCCCCACCTATCAGCA
CCACGGCGGCCGCGGCTGCCGCTGCCGCTGCGTTTCCTCTGCCTGGCTTT
GATATTGCTGTAGCACGACCAGAAGAGCAAACCTGTGTGGCTGAATCATG
GCAAGCTATAACTGGACCCGACGCCTTGCTTCCGGATGAGTACGTGAGAC
TGCCTTTAGATGAGCTCCAACCAGTCTTCGAAAGGGACTTGAGACGCTTC
GCCGACAAAACCGTAAATCCACGGGAACGCTGTCGTTTAGCACACTATCT
CGGAAATTTTTCTTGCACCGCCTCCGGGCTTTGTATGTATGAAAAGGCCG
CTTGGTACGTCCCTACGCTCTATGCGGTCGTTAAGGAGGTGAAAGACATC
TATGTGTCCGGTGCCATAGTCCCACGACCTTGCGTGGCAGGCTACGCAAT
GCTGGCCTTGACGAGTCTAGTCAAGCAAAGCATGCGTGTGCCATTCCCTT
CTTCCGTCCCTCCTTCCTCGGGGAAGGGGCATGGTCTTCATCCTAATGGG
CCGCATGCCGTGATTGATTATTTGCTTGGCCCGATGGGTTGTGGAGATCA
TGGCAACGGTGGCAGTAGCAGCCACAGCGGGAGCAGCGGAAAGCAACAGA
GAAAAAAGGTCCGCGGTAAGCAAGACCGAGGAGCAGCACAGCTGGGAAAA
GAAAACCACGGTAGCCCCCGTGTCCTCTGCATTTGGACGTTGCTCAAGCA
CGCTTCGGCCGAAACGGCGCGTTCGCGTGGCGCCCTCCGCACCCTCTCCT
GCGCCCTTGAGCTTCTTACCACCCTCGAACTTGCCTGCATGGGCCGCAAC
TCTGCGATCATTCTTTCCCAAAACCACGCCGTCCCTCCCTCCACCCCTCC
CCCCCTGCTAACCCAGCTCTGTACGTTCGAAATGTCCACAGAAGCGACCA
AATTGATTTTCTTAAAGGCAGCGTCTTTGATCCTGAAACACACACAATCA
AGAGGAGATGTTTGCGGGGTGGCTCAGGCCTTGGGGTTATTCGAGGTTAT
GGGAGGAGGGGCGGAGAATAATATTGTTGAGGAAGGGAGGGAGGGATGGA
AGGCGTTCGTCGCGGCGGATGGGGTAATGCCAATGGTGGCGGCGCTGGAA
AGCCTGAAGGACTGGCCGAAGAAGAGGGATGGGAGGAAGCGAAGGAGGAG
GAGAAGGAGGGTGGAGGAAGTTGGAGAGGAAGGGGAGGAATGGTCGACGA
CGTTGGAGGAGGAGGAGGAGGACGACGACGACGAGGAGGAAGAGGAGAGT
AAAGAGGTGGACGAGAACGACGAGGAGGAGATCATAAATGTATCAAATGC
GCGTCAGTCAGACCGTTTATCAATCCTTTCCTTCTTCACTGATCTGGGGC
CCGCACACCCTACCCTTATTTTGCCTGCGGTGAGTCAGCTGATCAAATGG
GCGGGTACGGAGGGATGAATGAGTCACGGCCGGCACAGGAAGAAGGGTCA
AGGCCTCCATCACCATCACGGCACCGCTTCAGGTCCCCTGGGTTTCCTGC
CGCCAGGCATCCTTCCCAGCAGCCTCCCTCCTTCAGGTGCCCCAGGTGCC
CCACCTATCAGCACCACGGCGGCCGCGGCTGCCGCTGCCGCTGCGTTTCC
TCTGCCTGGCTTTGATATTGCTGTAGCACGACCAGAAGAGCAAACCTGTG
TGGCTGAATCATGGCAAGCTATAACTGGACCCGACGCCTTGCTTCCGGAT
GAGTACGTGAGACTGCCTTTAGATGAGCTCCAACCAGTCTTCGAAAGGGA
CTTGAGACGCTTCGCCGACAAAACCGTAAATCCACGGGAACGCTGTCGTT
TAGCACACTATCTCGGAAATTTTTCTTGCACCGCCTCCGGGCTTTGTATG
TATGAAAAGGCCGCTTGGTACGTCCCTACGCTCTATGCGGTCGTTAAGGA
GGTGAAAGACATCTATGTGTCCGGTGCCATAGTCCCACGACCTTGCGTGG
CAGGCTACGCAATGCTGGCCTTGACGAGTCTAGTCAAGCAAAGCATGCGT
GTGCCATTCCCTTCTTCCGTCCCTCCTTCCTCGGGGAAGGGGCATGGTCT
TCATCCTAATGGGCCGCATGCCGTGATTGATTATTTGCTTGGCCCGATGG
GTTGTGGAGATCATGGCAACGGTGGCAGTAGCAGCCACAGCGGGAGCAGC
GGAAAGCAACAGAGAAAAAAGGTCCGCGGTAAGCAAGACCGAGGAGCAGC
ACAGCTGGGAAAAGAAAACCACGGTAGCCCCCGTGTCCTCTGCATTTGGA
CGTTGCTCAAGCACGCTTCGGCCGAAACGGCGCGTTCGCGTGGCGCCCTC
CGCACCCTCTCCTGCGCCCTTGAGCTTCTTACCACCCTCGAACTTGCCTG
CATGGGCCGCAACTCTGCGATCATTCTTTCCCAAAACCACGCCGTCCCTC
CCTCCACCCCTCCCCCCCTGCTAACCCAGCTCTGTACGTTCGAAATGTCC
ACAGAAGCGACCAAATTGATTTTCTTAAAGGCAGCGTCTTTGATCCTGAA
ACACACACAATCAAGAGGAGATGTTTGCGGGGTGGCTCAGGCCTTGGGGT
TATTCGAGGTTATGGGAGGAGGGGCGGAGAATAATATTGTTGAGGAAGGG
AGGGAGGGATGGAAGGCGTTCGTCGCGGCGGATGGGGTAATGCCAATGGT
GGCGGCGCTGGAAAGCCTGAAGGACTGGCCGAAGAAGAGGGATGGGAGGA
AGCGAAGGAGGAGGAGAAGGAGGGTGGAGGAAGTTGGAGAGGAAGGGGAG
GAATGGTCGACGACGTTGGAGGAGGAGGAGGAGGACGACGACGACGAGGA
GGAAGAGGAGAGTAAAGAGGTGGACGAGAACGACGAGGAGGAGATCATAA
ATGTATCAAATGCGCGTCAGTCAGACCGTTTATCAATCCTTTCCTTCTTC
ACTGATCTGGGGCCCGCACACCCTACCCTTATTTTGCCTGCGGTGAGTCA
GCTGATCAAATGGGCGGGTACGGAGG back to top
|