jgi.p|Nanoce1779_2|576780, mRNA_274 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|576780
Unique NamemRNA_274
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length588
Alignment locationscaffold_3:679955..680681 -

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Properties
Property NameValue
TranscriptId576866
TrackFilteredModels2
ProteinId576780
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:679955..680681 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|576780gene_274Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|576780mRNA_274-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_274CDS_274Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_274 ID=mRNA_274|Name=jgi.p|Nanoce1779_2|576780|organism=Nannochloropsis oceanica|type=mRNA|length=588bp
CAGTCACAGCACAGCACATGCCCCATGCCCGTGCACTCAATCTATATTCT
CAACGCCCAAGACAAAGTCCTCTTCCGTAAGCACCTAGACGCTGAATGGC
GGCTGATAAGTCACATCGACGACCGCCTCCAATGGGAGCGGGTACTCTAC
CGAAACACACGCAATAAATCACCTGCATTGCCCGGCGCGTCTCAATTCTT
TCAAGAAAGGGAAATAAACGTCGTCTATCAAGGGTTCTACGACGTTGTCG
TTTTTCTGGCCGGCACGGATGAGTGTGACGAGATGACATTGACGGACCTA
CTTGTCGTGGTGCAAGAACTTCTCTGTTTGGCATGTGGGGGCAAAAAAAA
AATAAGCGCCGCTAATGCTAGCGTTGAATCCGAGTTTCTTCATAAAGATG
GTGGAGCATTTGCCAAATTTTCTATTTATGTAGACCATATGATGCCACAT
GGTTTCGTGGCCTCGACAAACGTTGATCTCATTGACAAGCTGGCCAAGGG
AAAACCAGTGGTATAATTTCAGAGTATTGAAAAGAAGGAAGAAACCTGTA
TAGTTGCATAACCAAAGCCCAAGAGATTTCTAGAACAT
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protein sequence of jgi.p|Nanoce1779_2|576780

>mRNA_274-protein ID=mRNA_274-protein|Name=jgi.p|Nanoce1779_2|576780|organism=Nannochloropsis oceanica|type=polypeptide|length=164bp
MPVHSIYILNAQDKVLFRKHLDAEWRLISHIDDRLQWERVLYRNTRNKSP
ALPGASQFFQEREINVVYQGFYDVVVFLAGTDECDEMTLTDLLVVVQELL
CLACGGKKKISAANASVESEFLHKDGGAFAKFSIYVDHMMPHGFVASTNV
DLIDKLAKGKPVV*
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mRNA from alignment at scaffold_3:679955..680681-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_274 ID=mRNA_274|Name=jgi.p|Nanoce1779_2|576780|organism=Nannochloropsis oceanica|type=mRNA|length=727bp|location=Sequence derived from alignment at scaffold_3:679955..680681- (Nannochloropsis oceanica)
CAGTCACAGCACAGCACATGCCCCATGCCCGTGCACTCAATCTATATTCT
CAACGCCCAAGACAAAGTCCTCTTCCGTAAGCACCTAGACGCTGAATGGC
GGCTGATAAGTCACATCGACGACCGCCTCCAATGGGAGCGGGTACTCTAC
CGAAACACACGCAATAAATCACCTGCATTGCCCGGCGCGTCTCAATTCTT
TCAAGAAAGGGAAATAAACGTCGTCTATCAAGGGTTCTACGACGTTGTCG
TTTTTCTGGCCGGCACGGATGAGTGTGACGAGATGACATGTACGTACTGC
GAAGGAAAGGATTGCGATTTTCCTTCCTGCGTCATTGTCTTTCATAAGGC
ACAGAAGCCTTCCAATTGTTTTCATAAAAATCCAATCTACTTAACTTTCG
CGACACACACACACTTACGCACACACAGTGACGGACCTACTTGTCGTGGT
GCAAGAACTTCTCTGTTTGGCATGTGGGGGCAAAAAAAAAATAAGCGCCG
CTAATGCTAGCGTTGAATCCGAGTTTCTTCATAAAGATGGTGGAGCATTT
GCCAAATTTTCTATTTATGTAGACCATATGATGCCACATGGTTTCGTGGC
CTCGACAAACGTTGATCTCATTGACAAGCTGGCCAAGGGAAAACCAGTGG
TATAATTTCAGAGTATTGAAAAGAAGGAAGAAACCTGTATAGTTGCATAA
CCAAAGCCCAAGAGATTTCTAGAACAT
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Coding sequence (CDS) from alignment at scaffold_3:679955..680681-

>mRNA_274 ID=mRNA_274|Name=jgi.p|Nanoce1779_2|576780|organism=Nannochloropsis oceanica|type=CDS|length=984bp|location=Sequence derived from alignment at scaffold_3:679955..680681- (Nannochloropsis oceanica)
TGACGGACCTACTTGTCGTGGTGCAAGAACTTCTCTGTTTGGCATGTGGG
GGCAAAAAAAAAATAAGCGCCGCTAATGCTAGCGTTGAATCCGAGTTTCT
TCATAAAGATGGTGGAGCATTTGCCAAATTTTCTATTTATGTAGACCATA
TGATGCCACATGGTTTCGTGGCCTCGACAAACGTTGATCTCATTGACAAG
CTGGCCAAGGGAAAACCAGTGGTATAAATGCCCGTGCACTCAATCTATAT
TCTCAACGCCCAAGACAAAGTCCTCTTCCGTAAGCACCTAGACGCTGAAT
GGCGGCTGATAAGTCACATCGACGACCGCCTCCAATGGGAGCGGGTACTC
TACCGAAACACACGCAATAAATCACCTGCATTGCCCGGCGCGTCTCAATT
CTTTCAAGAAAGGGAAATAAACGTCGTCTATCAAGGGTTCTACGACGTTG
TCGTTTTTCTGGCCGGCACGGATGAGTGTGACGAGATGACATTGACGGAC
CTACTTGTCGTGGTGCAAGAACTTCTCTGTTTGGCATGTGGGGGCAAAAA
AAAAATAAGCGCCGCTAATGCTAGCGTTGAATCCGAGTTTCTTCATAAAG
ATGGTGGAGCATTTGCCAAATTTTCTATTTATGTAGACCATATGATGCCA
CATGGTTTCGTGGCCTCGACAAACGTTGATCTCATTGACAAGCTGGCCAA
GGGAAAACCAGTGGTATAAATGCCCGTGCACTCAATCTATATTCTCAACG
CCCAAGACAAAGTCCTCTTCCGTAAGCACCTAGACGCTGAATGGCGGCTG
ATAAGTCACATCGACGACCGCCTCCAATGGGAGCGGGTACTCTACCGAAA
CACACGCAATAAATCACCTGCATTGCCCGGCGCGTCTCAATTCTTTCAAG
AAAGGGAAATAAACGTCGTCTATCAAGGGTTCTACGACGTTGTCGTTTTT
CTGGCCGGCACGGATGAGTGTGACGAGATGACAT
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Synonyms
Publications