jgi.p|Nanoce1779_2|581351, mRNA_2739 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|581351
Unique NamemRNA_2739
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length581
Alignment locationscaffold_5:1065149..1065941 -

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Properties
Property NameValue
TranscriptId581437
TrackFilteredModels2
ProteinId581351
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:1065149..1065941 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|581351gene_2739Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|581351mRNA_2739-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2739CDS_2739Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2739 ID=mRNA_2739|Name=jgi.p|Nanoce1779_2|581351|organism=Nannochloropsis oceanica|type=mRNA|length=581bp
CGAGTACCTGTCGCTGATGATCTTTCTGGAGAAGGAGGGGGGGAAGGAGG
GAGGGATGGGGGAAGCAGAGGAGATGTTTTGGGAAGGAGGAACGGAGGGG
CTGCTTGGCTATCTAAGAATGAGGAGAACTGAAGAGCTGATGGCACAATT
ATCCTTAGTGATGGAGGAGGAGGTTGGAATGGGAGGAGGGATGGGGGGAG
GACCGACGTGTGAGGTGTGTAAGCAGACGTCGGAGGCTGTAAGGAGGCAG
GCGTTGCTGAGGTGCGCGCGATGTCGAAGTGTACGATATTGCTCGAGGGA
GTGCCAGGTCTGGCACTGGAGGCGGGGTGGACACAAGGAAGCCTGCGAAC
AGCTTATTGCTGTTGCTAAAACGGCTGCACCTGCAGTGACTACAGTCTCT
GCGGTTTCAACTCAACAGCAGTAAGAAGGAGAAAGGGAGGGAGGAATGAA
GAGAGGGCCTGGCAGGTAGAACTTGTGATATACATGCGAAGAGAGTGATT
TGAAAACCAAAGAAGTAAGAAAGCACCAGTCCCCCCCTTCGCCTCCCCAA
AAAAAGGGAATACAGGCACCATTATTCATAT
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protein sequence of jgi.p|Nanoce1779_2|581351

>mRNA_2739-protein ID=mRNA_2739-protein|Name=jgi.p|Nanoce1779_2|581351|organism=Nannochloropsis oceanica|type=polypeptide|length=136bp
MIFLEKEGGKEGGMGEAEEMFWEGGTEGLLGYLRMRRTEELMAQLSLVME
EEVGMGGGMGGGPTCEVCKQTSEAVRRQALLRCARCRSVRYCSRECQVWH
WRRGGHKEACEQLIAVAKTAAPAVTTVSAVSTQQQ*
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mRNA from alignment at scaffold_5:1065149..1065941-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2739 ID=mRNA_2739|Name=jgi.p|Nanoce1779_2|581351|organism=Nannochloropsis oceanica|type=mRNA|length=793bp|location=Sequence derived from alignment at scaffold_5:1065149..1065941- (Nannochloropsis oceanica)
CGAGTACCTGTCGCTGATGATCTTTCTGGAGAAGGAGGGGGGGAAGGAGG
GAGGGATGGGGGAAGCAGAGGAGATGTTTTGGGAAGGAGGAACGGAGGGG
CTGCTTGGCTATCTAAGAATGAGGAGAACTGAAGAGCTGATGGCACAATT
ATCCTTAGTGATGGAGGAGGAGGTTGGAATGGGAGGAGGGATGGGGGGAG
GACCGACGTGTGAGGTGTGTAAGCAGACGTCGGAGGCTGTAAGGAGGCAG
GCGTTGCTGAGGTGCGCGCGATGTCGAAGTGTACGATATTGCTCGAGGGA
GTGCCAGGTAGGTGGAGGGAGGAAGGAATTTAGGGAGGAAGGGCTGAGGT
CGTCAGCTTAACGATATATATTTCGCCTCATTGACCCGTCAGCGTTCTCT
GCTTTTAGTCGTAGGTCTGGCACTAGAGGCGGGGCGGACACCGCTTGACT
CATTATAATTATCTACTAACTTCTCTAATATCATATAATTACGCTCATTT
CTCTTATGTAATATAACAGGTCTGGCACTGGAGGCGGGGTGGACACAAGG
AAGCCTGCGAACAGCTTATTGCTGTTGCTAAAACGGCTGCACCTGCAGTG
ACTACAGTCTCTGCGGTTTCAACTCAACAGCAGTAAGAAGGAGAAAGGGA
GGGAGGAATGAAGAGAGGGCCTGGCAGGTAGAACTTGTGATATACATGCG
AAGAGAGTGATTTGAAAACCAAAGAAGTAAGAAAGCACCAGTCCCCCCCT
TCGCCTCCCCAAAAAAAGGGAATACAGGCACCATTATTCATAT
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Coding sequence (CDS) from alignment at scaffold_5:1065149..1065941-

>mRNA_2739 ID=mRNA_2739|Name=jgi.p|Nanoce1779_2|581351|organism=Nannochloropsis oceanica|type=CDS|length=816bp|location=Sequence derived from alignment at scaffold_5:1065149..1065941- (Nannochloropsis oceanica)
GTCTGGCACTGGAGGCGGGGTGGACACAAGGAAGCCTGCGAACAGCTTAT
TGCTGTTGCTAAAACGGCTGCACCTGCAGTGACTACAGTCTCTGCGGTTT
CAACTCAACAGCAGTAAATGATCTTTCTGGAGAAGGAGGGGGGGAAGGAG
GGAGGGATGGGGGAAGCAGAGGAGATGTTTTGGGAAGGAGGAACGGAGGG
GCTGCTTGGCTATCTAAGAATGAGGAGAACTGAAGAGCTGATGGCACAAT
TATCCTTAGTGATGGAGGAGGAGGTTGGAATGGGAGGAGGGATGGGGGGA
GGACCGACGTGTGAGGTGTGTAAGCAGACGTCGGAGGCTGTAAGGAGGCA
GGCGTTGCTGAGGTGCGCGCGATGTCGAAGTGTACGATATTGCTCGAGGG
AGTGCCAGGTCTGGCACTGGAGGCGGGGTGGACACAAGGAAGCCTGCGAA
CAGCTTATTGCTGTTGCTAAAACGGCTGCACCTGCAGTGACTACAGTCTC
TGCGGTTTCAACTCAACAGCAGTAAATGATCTTTCTGGAGAAGGAGGGGG
GGAAGGAGGGAGGGATGGGGGAAGCAGAGGAGATGTTTTGGGAAGGAGGA
ACGGAGGGGCTGCTTGGCTATCTAAGAATGAGGAGAACTGAAGAGCTGAT
GGCACAATTATCCTTAGTGATGGAGGAGGAGGTTGGAATGGGAGGAGGGA
TGGGGGGAGGACCGACGTGTGAGGTGTGTAAGCAGACGTCGGAGGCTGTA
AGGAGGCAGGCGTTGCTGAGGTGCGCGCGATGTCGAAGTGTACGATATTG
CTCGAGGGAGTGCCAG
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Synonyms
Publications