jgi.p|Nanoce1779_2|581350, mRNA_2738 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|581350
Unique NamemRNA_2738
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length585
Alignment locationscaffold_5:1064462..1065148 +

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Properties
Property NameValue
TranscriptId581436
TrackFilteredModels2
ProteinId581350
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:1064462..1065148 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|581350gene_2738Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|581350mRNA_2738-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2738CDS_2738Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2738 ID=mRNA_2738|Name=jgi.p|Nanoce1779_2|581350|organism=Nannochloropsis oceanica|type=mRNA|length=585bp
ACAGGCAGACACTCCACTCCCCTTCGGCAGACACGTCACTTTCCCCCAGC
CTTAAAATGTCGTCCCCCTCGCTTTCGTTCTCCGCTGCCTCCTCTTCTGC
CTCCACCAGCATCACAACCACCAGCACCCTCCCACAGGGCCAAGCGCTTC
AATTGTACAACACAGAGCTGGTTCAGGCCCTGAGAGAGCTGAAGGACAAA
CGGGACGCACTCAGCCAGCAAATAAGGATGGAGGAAGAAACTCGAATTCA
GTTGCAGCATGAGGCAGCAGCAATTGGAGCCAGGCTCCAGCGCATCGACG
GGTCTTTGCATGAGAAGATTCAGACCAGAAACGTTTACGATAGAACAATC
GGAGAAACAGAGGCTGCATACAGAAAGATCCTGGAAAGCAGCCAGACATT
GCTGCACGTCTTGAAACGGGAGAGTGGTCATTTGTTGCGTAGTGGGAGCA
GCAGCAAAGAAGGGTTTGGGCAGCAGCAGCCCATGGCAGGGTCAAGAATG
GGGGTTGATGGAAATGGAAGTATGGCTAATTAACTTGTATTTGAATATTC
TTATATACGTGAAGGACGAAAAAAAATAGGCCTCA
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protein sequence of jgi.p|Nanoce1779_2|581350

>mRNA_2738-protein ID=mRNA_2738-protein|Name=jgi.p|Nanoce1779_2|581350|organism=Nannochloropsis oceanica|type=polypeptide|length=159bp
MSSPSLSFSAASSSASTSITTTSTLPQGQALQLYNTELVQALRELKDKRD
ALSQQIRMEEETRIQLQHEAAAIGARLQRIDGSLHEKIQTRNVYDRTIGE
TEAAYRKILESSQTLLHVLKRESGHLLRSGSSSKEGFGQQQPMAGSRMGV
DGNGSMAN*
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mRNA from alignment at scaffold_5:1064462..1065148+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2738 ID=mRNA_2738|Name=jgi.p|Nanoce1779_2|581350|organism=Nannochloropsis oceanica|type=mRNA|length=687bp|location=Sequence derived from alignment at scaffold_5:1064462..1065148+ (Nannochloropsis oceanica)
ACAGGCAGACACTCCACTCCCCTTCGGCAGACACGTCACTTTCCCCCAGC
CTTAAAATGTCGTCCCCCTCGCTTTCGTTCTCCGCTGCCTCCTCTTCTGC
CTCCACCAGCATCACAACCACCAGCACCCTCCCACAGGGCCAAGCGCTTC
AATTGTACAACACAGAGCTGGTTCAGGCCCTGAGAGAGCTGAAGGACAAA
CGGGACGCACTCAGCCAGCAAATAAGGATGGAGGAAGAAACTCGAATTCA
GTTGCAGCATGAGGCAGCAGCAATTGGAGCCAGGCTCCAGCGCATCGACG
GGTCTTTGCATGAGAAGATTCAGACCAGAAACGTTTACGATAGAACAAGT
AAGTTTCTCGATTTTGTACCTGGGGCATGACTTATTTTCTTCGAACAGAA
AATTCGAAGGCAAGAATGCCCGCTCACGTTTTCCCTCCTCTTTCCACCAG
TCGGAGAAACAGAGGCTGCATACAGAAAGATCCTGGAAAGCAGCCAGACA
TTGCTGCACGTCTTGAAACGGGAGAGTGGTCATTTGTTGCGTAGTGGGAG
CAGCAGCAAAGAAGGGTTTGGGCAGCAGCAGCCCATGGCAGGGTCAAGAA
TGGGGGTTGATGGAAATGGAAGTATGGCTAATTAACTTGTATTTGAATAT
TCTTATATACGTGAAGGACGAAAAAAAATAGGCCTCA
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Coding sequence (CDS) from alignment at scaffold_5:1064462..1065148+

>mRNA_2738 ID=mRNA_2738|Name=jgi.p|Nanoce1779_2|581350|organism=Nannochloropsis oceanica|type=CDS|length=954bp|location=Sequence derived from alignment at scaffold_5:1064462..1065148+ (Nannochloropsis oceanica)
ATGTCGTCCCCCTCGCTTTCGTTCTCCGCTGCCTCCTCTTCTGCCTCCAC
CAGCATCACAACCACCAGCACCCTCCCACAGGGCCAAGCGCTTCAATTGT
ACAACACAGAGCTGGTTCAGGCCCTGAGAGAGCTGAAGGACAAACGGGAC
GCACTCAGCCAGCAAATAAGGATGGAGGAAGAAACTCGAATTCAGTTGCA
GCATGAGGCAGCAGCAATTGGAGCCAGGCTCCAGCGCATCGACGGGTCTT
TGCATGAGAAGATTCAGACCAGAAACGTTTACGATAGAACAATCGGAGAA
ACAGAGGCTGCATACAGAAAGATCCTGGAAAGCAGCCAGACATTGCTGCA
CGTCTTGAAACGGGAGAGTGGTCATTTGTTGCGTAGTGGGAGCAGCAGCA
AAGAAGGGTTTGGGCAGCAGCAGCCCATGGCAGGGTCAAGAATGGGGGTT
GATGGAAATGGAAGTATGGCTAATTAAATGTCGTCCCCCTCGCTTTCGTT
CTCCGCTGCCTCCTCTTCTGCCTCCACCAGCATCACAACCACCAGCACCC
TCCCACAGGGCCAAGCGCTTCAATTGTACAACACAGAGCTGGTTCAGGCC
CTGAGAGAGCTGAAGGACAAACGGGACGCACTCAGCCAGCAAATAAGGAT
GGAGGAAGAAACTCGAATTCAGTTGCAGCATGAGGCAGCAGCAATTGGAG
CCAGGCTCCAGCGCATCGACGGGTCTTTGCATGAGAAGATTCAGACCAGA
AACGTTTACGATAGAACAATCGGAGAAACAGAGGCTGCATACAGAAAGAT
CCTGGAAAGCAGCCAGACATTGCTGCACGTCTTGAAACGGGAGAGTGGTC
ATTTGTTGCGTAGTGGGAGCAGCAGCAAAGAAGGGTTTGGGCAGCAGCAG
CCCATGGCAGGGTCAAGAATGGGGGTTGATGGAAATGGAAGTATGGCTAA
TTAA
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Synonyms
Publications