jgi.p|Nanoce1779_2|581347, mRNA_2737 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|581347
Unique Name	mRNA_2737
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2108
Alignment location	scaffold_5:1063041..1065148 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	581433
Track	FilteredModels2
ProteinId	581347

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_5	supercontig	scaffold_5:1063041..1065148 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|581347	gene_2737	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|581347	mRNA_2737-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2737	CDS_2737	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_5:1063041..1065148+
coding sequence from alignment at scaffold_5:1063041..1065148+

mRNA sequence

>mRNA_2737 ID=mRNA_2737|Name=jgi.p|Nanoce1779_2|581347|organism=Nannochloropsis oceanica|type=mRNA|length=2108bp
ATGGCTGGCCTCGCACCAAATTCTGCCGGGGAAGCAAAGACTGTGTGTGA
TAGGCTCGCGGTTGAGGAAAAGGAAAAGGGGACGGGGAGGGGACAAGGCA
GGGAAGGAGGGAGGGAGTGAAGAGCAGCAGGGTGTGTGGCAGAGGTTGTT
CTTCGGAGAAGGTTACGGCTCAGAGGAAGACGAGGAAGAGGACGAACATG
GCCTGCCCTCCCCCCCCCTCTATCCTGCATCCCCCTCTTCCTCCCCCTCC
ATGAGGGATACAGGCGACGCCTTGATTCTGCGTCTACATTCGCTTTACTT
CCCCTACGTGAGCAAGCTTGCAGGCTCCTTCTCCAATCTCCTGGATTTTC
TCCTCCTTTCCCCCTCCCATGGCCCTACCTCCTTTACTCCCTCCATTGCC
GCTCTCCGCTCCTCCTCAACCCTCATCGAGCACCACGACTCGCTGGTCTA
CGAACGCCACCGACGGAAGGAATGGGCTTTGTCCTCCCTCCCTCCCACCC
TCTACACCACCGCCGGTCTTCAACGTCCCGTCGTCTTTCCCTCCTCCTCT
CCCTCCTCTGATGAAGAAGACTGTTACTGGCCCCGGGGGATGGAGGGTCT
GCCGTTACCGAGAGGGAGGAGACTGAGGCCTGAGGAAATGCTCCGTTTGG
CCGAGACGACGGAGATCGCAAAGAGTAAGGGGCACCGGACAGTGGTACAT
GCGATCAACGAAATGGTTTTCGTGCAGAAAAAGATGATTGAGAGGGGTAT
GGGGGGGGAGGGGGAGGAGGAGGAGCCGTTAGGCCTATTGCTATCTCGGA
TTAGTGATGGTAATACGATTGCCGGTGGAAAAAGAGAAAGGAAAGAAGGT
GGAGATGTAGAAGGAGGTGGAGGGAAAGAAGAAGGAGATAAAGGAGGAGG
AGTCGCGGTGACCAGAGCTGTGCTGGACAAGGCCGCGCATCTGTTGAACC
GGGCTGATAGCCTTTTTGGTCGGGTGGTGGTTAAGAATGTTGGGGGGGCA
CAATCGTGATATCAGCGGGGTCGGTGGCGGCTGGAGTGCGGATGAGTAGA
GAGAGGTTTGACGACAATGGTGGGAATGATAGCCAGGGTCTGAAAGCCTT
TGATAGTGTGTTGATCGACGCTACGTGGGAAGTAGTAATGCAGGGCTTCG
ATGGGTGCGGCAATGATAGCAAAACGGGTGATTAAACCTACAAGCACGCA
TAAAGGATGTAAGTACAAAGTAAAGCATTGTATTGTATATATATGCAATA
TAACTAAAGTTGTTCGGCGTACGTGCCCAGAGCTTCCAAACGGCAGCCAC
AACGAAAACCCGTCTCTTGGTCATCCTATCAAAGATTGCCTTCGCCACTA
GCCCGGTATTTTTATCCCTCTCTCCTCCCAGTGCTTATTCTCCACGAATG
TACCTTCATCACCCTCACAACACAGGCAGACACTCCACTCCCCTTCGGCA
GACACGTCACTTTCCCCCAGCCTTAAAATGTCGTCCCCCTCGCTTTCGTT
CTCCGCTGCCTCCTCTTCTGCCTCCACCAGCATCACAACCACCAGCACCC
TCCCACAGGGCCAAGCGCTTCAATTGTACAACACAGAGCTGGTTCAGGCC
CTGAGAGAGCTGAAGGACAAACGGGACGCACTCAGCCAGCAAATAAGGAT
GGAGGAAGAAACTCGAATTCAGTTGCAGCATGAGGCAGCAGCAATTGGAG
CCAGGCTCCAGCGCATCGACGGGTCTTTGCATGAGAAGATTCAGACCAGA
AACGTTTACGATAGAACAAGTAAGTTTCTCGATTTTGTACCTGGGGCATG
ACTTATTTTCTTCGAACAGAAAATTCGAAGGCAAGAATGCCCGCTCACGT
TTTCCCTCCTCTTTCCACCAGTCGGAGAAACAGAGGCTGCATACAGAAAG
ATCCTGGAAAGCAGCCAGACATTGCTGCACGTCTTGAAACGGGAGAGTGG
TCATTTGTTGCGTAGTGGGAGCAGCAGCAAAGAAGGGTTTGGGCAGCAGC
AGCCCATGGCAGGGTCAAGAATGGGGGTTGATGGAAATGGAAGTATGGCT
AATTAACTTGTATTTGAATATTCTTATATACGTGAAGGACGAAAAAAAAT
AGGCCTCA

protein sequence of jgi.p|Nanoce1779_2|581347

>mRNA_2737-protein ID=mRNA_2737-protein|Name=jgi.p|Nanoce1779_2|581347|organism=Nannochloropsis oceanica|type=polypeptide|length=253bp
MRDTGDALILRLHSLYFPYVSKLAGSFSNLLDFLLLSPSHGPTSFTPSIA
ALRSSSTLIEHHDSLVYERHRRKEWALSSLPPTLYTTAGLQRPVVFPSSS
PSSDEEDCYWPRGMEGLPLPRGRRLRPEEMLRLAETTEIAKSKGHRTVVH
AINEMVFVQKKMIERGMGGEGEEEEPLGLLLSRISDGNTIAGGKRERKEG
GDVEGGGGKEEGDKGGGVAVTRAVLDKAAHLLNRADSLFGRVVVKNVGGA
QS*

mRNA from alignment at scaffold_5:1063041..1065148+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2737 ID=mRNA_2737|Name=jgi.p|Nanoce1779_2|581347|organism=Nannochloropsis oceanica|type=mRNA|length=2108bp|location=Sequence derived from alignment at scaffold_5:1063041..1065148+ (Nannochloropsis oceanica)
ATGGCTGGCCTCGCACCAAATTCTGCCGGGGAAGCAAAGACTGTGTGTGA
TAGGCTCGCGGTTGAGGAAAAGGAAAAGGGGACGGGGAGGGGACAAGGCA
GGGAAGGAGGGAGGGAGTGAAGAGCAGCAGGGTGTGTGGCAGAGGTTGTT
CTTCGGAGAAGGTTACGGCTCAGAGGAAGACGAGGAAGAGGACGAACATG
GCCTGCCCTCCCCCCCCCTCTATCCTGCATCCCCCTCTTCCTCCCCCTCC
ATGAGGGATACAGGCGACGCCTTGATTCTGCGTCTACATTCGCTTTACTT
CCCCTACGTGAGCAAGCTTGCAGGCTCCTTCTCCAATCTCCTGGATTTTC
TCCTCCTTTCCCCCTCCCATGGCCCTACCTCCTTTACTCCCTCCATTGCC
GCTCTCCGCTCCTCCTCAACCCTCATCGAGCACCACGACTCGCTGGTCTA
CGAACGCCACCGACGGAAGGAATGGGCTTTGTCCTCCCTCCCTCCCACCC
TCTACACCACCGCCGGTCTTCAACGTCCCGTCGTCTTTCCCTCCTCCTCT
CCCTCCTCTGATGAAGAAGACTGTTACTGGCCCCGGGGGATGGAGGGTCT
GCCGTTACCGAGAGGGAGGAGACTGAGGCCTGAGGAAATGCTCCGTTTGG
CCGAGACGACGGAGATCGCAAAGAGTAAGGGGCACCGGACAGTGGTACAT
GCGATCAACGAAATGGTTTTCGTGCAGAAAAAGATGATTGAGAGGGGTAT
GGGGGGGGAGGGGGAGGAGGAGGAGCCGTTAGGCCTATTGCTATCTCGGA
TTAGTGATGGTAATACGATTGCCGGTGGAAAAAGAGAAAGGAAAGAAGGT
GGAGATGTAGAAGGAGGTGGAGGGAAAGAAGAAGGAGATAAAGGAGGAGG
AGTCGCGGTGACCAGAGCTGTGCTGGACAAGGCCGCGCATCTGTTGAACC
GGGCTGATAGCCTTTTTGGTCGGGTGGTGGTTAAGAATGTTGGGGGGGCA
CAATCGTGATATCAGCGGGGTCGGTGGCGGCTGGAGTGCGGATGAGTAGA
GAGAGGTTTGACGACAATGGTGGGAATGATAGCCAGGGTCTGAAAGCCTT
TGATAGTGTGTTGATCGACGCTACGTGGGAAGTAGTAATGCAGGGCTTCG
ATGGGTGCGGCAATGATAGCAAAACGGGTGATTAAACCTACAAGCACGCA
TAAAGGATGTAAGTACAAAGTAAAGCATTGTATTGTATATATATGCAATA
TAACTAAAGTTGTTCGGCGTACGTGCCCAGAGCTTCCAAACGGCAGCCAC
AACGAAAACCCGTCTCTTGGTCATCCTATCAAAGATTGCCTTCGCCACTA
GCCCGGTATTTTTATCCCTCTCTCCTCCCAGTGCTTATTCTCCACGAATG
TACCTTCATCACCCTCACAACACAGGCAGACACTCCACTCCCCTTCGGCA
GACACGTCACTTTCCCCCAGCCTTAAAATGTCGTCCCCCTCGCTTTCGTT
CTCCGCTGCCTCCTCTTCTGCCTCCACCAGCATCACAACCACCAGCACCC
TCCCACAGGGCCAAGCGCTTCAATTGTACAACACAGAGCTGGTTCAGGCC
CTGAGAGAGCTGAAGGACAAACGGGACGCACTCAGCCAGCAAATAAGGAT
GGAGGAAGAAACTCGAATTCAGTTGCAGCATGAGGCAGCAGCAATTGGAG
CCAGGCTCCAGCGCATCGACGGGTCTTTGCATGAGAAGATTCAGACCAGA
AACGTTTACGATAGAACAAGTAAGTTTCTCGATTTTGTACCTGGGGCATG
ACTTATTTTCTTCGAACAGAAAATTCGAAGGCAAGAATGCCCGCTCACGT
TTTCCCTCCTCTTTCCACCAGTCGGAGAAACAGAGGCTGCATACAGAAAG
ATCCTGGAAAGCAGCCAGACATTGCTGCACGTCTTGAAACGGGAGAGTGG
TCATTTGTTGCGTAGTGGGAGCAGCAGCAAAGAAGGGTTTGGGCAGCAGC
AGCCCATGGCAGGGTCAAGAATGGGGGTTGATGGAAATGGAAGTATGGCT
AATTAACTTGTATTTGAATATTCTTATATACGTGAAGGACGAAAAAAAAT
AGGCCTCA

Coding sequence (CDS) from alignment at scaffold_5:1063041..1065148+

>mRNA_2737 ID=mRNA_2737|Name=jgi.p|Nanoce1779_2|581347|organism=Nannochloropsis oceanica|type=CDS|length=759bp|location=Sequence derived from alignment at scaffold_5:1063041..1065148+ (Nannochloropsis oceanica)
ATGAGGGATACAGGCGACGCCTTGATTCTGCGTCTACATTCGCTTTACTT
CCCCTACGTGAGCAAGCTTGCAGGCTCCTTCTCCAATCTCCTGGATTTTC
TCCTCCTTTCCCCCTCCCATGGCCCTACCTCCTTTACTCCCTCCATTGCC
GCTCTCCGCTCCTCCTCAACCCTCATCGAGCACCACGACTCGCTGGTCTA
CGAACGCCACCGACGGAAGGAATGGGCTTTGTCCTCCCTCCCTCCCACCC
TCTACACCACCGCCGGTCTTCAACGTCCCGTCGTCTTTCCCTCCTCCTCT
CCCTCCTCTGATGAAGAAGACTGTTACTGGCCCCGGGGGATGGAGGGTCT
GCCGTTACCGAGAGGGAGGAGACTGAGGCCTGAGGAAATGCTCCGTTTGG
CCGAGACGACGGAGATCGCAAAGAGTAAGGGGCACCGGACAGTGGTACAT
GCGATCAACGAAATGGTTTTCGTGCAGAAAAAGATGATTGAGAGGGGTAT
GGGGGGGGAGGGGGAGGAGGAGGAGCCGTTAGGCCTATTGCTATCTCGGA
TTAGTGATGGTAATACGATTGCCGGTGGAAAAAGAGAAAGGAAAGAAGGT
GGAGATGTAGAAGGAGGTGGAGGGAAAGAAGAAGGAGATAAAGGAGGAGG
AGTCGCGGTGACCAGAGCTGTGCTGGACAAGGCCGCGCATCTGTTGAACC
GGGCTGATAGCCTTTTTGGTCGGGTGGTGGTTAAGAATGTTGGGGGGGCA
CAATCGTGA

Synonyms

Publications