jgi.p|Nanoce1779_2|581346, mRNA_2736 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|581346
Unique NamemRNA_2736
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1030
Alignment locationscaffold_5:1061041..1062434 +

Link to JBrowse

Properties
Property NameValue
TranscriptId581432
TrackFilteredModels2
ProteinId581346
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:1061041..1062434 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|581346gene_2736Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|581346mRNA_2736-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2736CDS_2736Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2736 ID=mRNA_2736|Name=jgi.p|Nanoce1779_2|581346|organism=Nannochloropsis oceanica|type=mRNA|length=1030bp
CCCACAAGCCCGCTTGCCTTTTCCTGGCAACCGAGCACGACCACCGCAAC
GATGCTAGGCGCCCAACTTCGCACCGAAATCAGCAAGGCACATATCGATA
CACCCAAGGTCAAGGCCTTCTGTCGGAAAAACCCTGTGGGTATCGTGGTG
GACAACAAAATAAGATCGAGAGTTTGGTTAACTCTCCTCCTCGCCGGCGA
AGCTCCCCCTCCCTTGCCCTCCGTTCCCCCGGCCGCCCGCCTCCAAGGGG
AAGATGCTCGCGTTGTGGATGCCGATGTGAGACGCACCCGCGGTTATCTT
CCCATCTTCCAGGAACCCGCCACGCAAGAAACGGTTCGGATGCTTTTGAC
AACGTTTTGCCTGGCCAATGGCGTGCGGTACAAGCAAGGGATGCATGAGC
TTCTGGCCCCCTTCGTCGCGCTTAGCCCTGATCCGCCCTTACCTCCCCTG
CCGGCTGAAGCGATCTATGCTATGTTTTCCCGGTTTATTTCGCGGTATCT
AGGACCTTTTTTCAGGGATGAAGGCACCCGGGTGTTGCAAGAGGGGTTTT
CACTGTTCGAAATGCTGCTGGCGTACCATGACCCGGAGCTGGCGCAGCAC
CTGAAAAAACACGACTTCCCTCCTGCCCTTTATCTGACGCCGTTTCTCGT
CACCCTTTTTGCCCATAATCTCGAGATGTATCTCGTACATCGTTTGTGGG
ACAGCTATTTCTCTCTCGATGACCCTACCCTGGTTTATTTCCTCGCCCTC
GCCCTCCTCCGTCTCAGGCGGCCCCTGCTCCTTCCGCTGGACCTGGGAGG
GAGGCGGGGGTGGAGGTATTGGAGATGATAGGAGAAGTGAAGATTCGGTC
ACAGGAAGATATTGGGGAGCTGGTGCCCCTGGCGCTGGAGGCGAGTTGGC
GGACCCCTCGAGGGATGTGCATGGACCTGAGGAGAACGACCCTGATGGGA
AGGGGGGAGGGAGGGAGAGAGGAGGGGGAGAGGATCGGAACGGAGGAGGA
GGAGGAGGAGGAGGAGAAGGAGGAAAAGGC
back to top

protein sequence of jgi.p|Nanoce1779_2|581346

>mRNA_2736-protein ID=mRNA_2736-protein|Name=jgi.p|Nanoce1779_2|581346|organism=Nannochloropsis oceanica|type=polypeptide|length=259bp
MLGAQLRTEISKAHIDTPKVKAFCRKNPVGIVVDNKIRSRVWLTLLLAGE
APPPLPSVPPAARLQGEDARVVDADVRRTRGYLPIFQEPATQETVRMLLT
TFCLANGVRYKQGMHELLAPFVALSPDPPLPPLPAEAIYAMFSRFISRYL
GPFFRDEGTRVLQEGFSLFEMLLAYHDPELAQHLKKHDFPPALYLTPFLV
TLFAHNLEMYLVHRLWDSYFSLDDPTLVYFLALALLRLRRPLLLPLDLGG
RRGWRYWR*
back to top

mRNA from alignment at scaffold_5:1061041..1062434+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2736 ID=mRNA_2736|Name=jgi.p|Nanoce1779_2|581346|organism=Nannochloropsis oceanica|type=mRNA|length=1394bp|location=Sequence derived from alignment at scaffold_5:1061041..1062434+ (Nannochloropsis oceanica)
CCCACAAGCCCGCTTGCCTTTTCCTGGCAACCGAGCACGACCACCGCAAC
GATGCTAGGCGCCCAACTTCGCACCGAAATCAGCAAGGCACATATCGATA
CACCCAAGGTCAAGGCCTTCTGTCGGAAAAACCCTGTGGGTATCGTGGTG
GACAACAAAATAAGATCGAGAGTTTGGTTAACTCTCCTCCTCGCCGGCGA
AGCTCCCCCTCCCTTGCCCTCCGTTCCCCCGGCCGCCCGCCTCCAAGGGG
AAGATGCTCGCGTTGTGGATGCCGATGTGAGACGCACCCGCGGTTATCTT
CCCATCTTCCAGGAACCCGCCACGCAAGAAACGGTTCGGATGCTTTTGAC
AACGTTTTGCCTGGCCAATGGCGTGCGGTACAAGCAAGGGATGCATGAGC
TTCTGGCCCCCTTCGTCGCGCTTAGCCCTGATCCGCCCTTACCTCCCCTG
CCGGCTGAAGCGATCTATGCTATGTTTTCCCGGTTTATTTCGCGGTATCT
AGGACCTTTTTTCAGGGTAAGTCGGGATGCTTGTGGTGATAGATCATCAG
TCAGGGAGGGAGAGGGAGGGAGGGAGGGAGGGATGGGGGGGTTGCAAAGG
TGCGTTATTGCTATAGAGGCGGTGCTAATGCAAGAATTCTCACGAAATGC
AAAGTGGCTCAAGTTCTCCTCCTTTTTGCATGGCGGATTTTCCTCTCAGG
ATGAAGGCACCCGGGTGTTGCAAGAGGGGTTTTCACTGTTCGAAATGCTG
CTGGCGTACCATGACCCGGAGCTGGCGCAGCACCTGAAAAAACACGACTT
CCCTCCTGCCCTTTATCTGACGCCGTTTCTCGTCACCCTTTTTGGTAGGT
TTGCGAAGGAGATGGGGAAAGAGGGAGGGAGGGAGGGAGGGAGGGAGGGA
GGGCGGGAGGGGCCGAGGAAGTTTTTTACAGGCAGCCATCACGAAAGAGA
CTGTTTCATACCTACTAAAAGGCTCTTTCCAACCCTTTCCCTTCTTCCCT
CCTCTTCAGCCCATAATCTCGAGATGTATCTCGTACATCGTTTGTGGGAC
AGCTATTTCTCTCTCGATGACCCTACCCTGGTTTATTTCCTCGCCCTCGC
CCTCCTCCGTCTCAGGCGGCCCCTGCTCCTTCCGCTGGACCTGGGAGGGA
GGGAAGGAGGGAGGGAGGCGGGGGTGGAGGTATTGGAGATGATAGGAGAA
GTGAAGATTCGGTCACAGGAAGATATTGGGGAGCTGGTGCCCCTGGCGCT
GGAGGCGAGTTGGCGGACCCCTCGAGGGATGTGCATGGACCTGAGGAGAA
CGACCCTGATGGGAAGGGGGGAGGGAGGGAGAGAGGAGGGGGAGAGGATC
GGAACGGAGGAGGAGGAGGAGGAGGAGGAGAAGGAGGAAAAGGC
back to top

Coding sequence (CDS) from alignment at scaffold_5:1061041..1062434+

>mRNA_2736 ID=mRNA_2736|Name=jgi.p|Nanoce1779_2|581346|organism=Nannochloropsis oceanica|type=CDS|length=3108bp|location=Sequence derived from alignment at scaffold_5:1061041..1062434+ (Nannochloropsis oceanica)
ATGCTAGGCGCCCAACTTCGCACCGAAATCAGCAAGGCACATATCGATAC
ACCCAAGGTCAAGGCCTTCTGTCGGAAAAACCCTGTGGGTATCGTGGTGG
ACAACAAAATAAGATCGAGAGTTTGGTTAACTCTCCTCCTCGCCGGCGAA
GCTCCCCCTCCCTTGCCCTCCGTTCCCCCGGCCGCCCGCCTCCAAGGGGA
AGATGCTCGCGTTGTGGATGCCGATGTGAGACGCACCCGCGGTTATCTTC
CCATCTTCCAGGAACCCGCCACGCAAGAAACGGTTCGGATGCTTTTGACA
ACGTTTTGCCTGGCCAATGGCGTGCGGTACAAGCAAGGGATGCATGAGCT
TCTGGCCCCCTTCGTCGCGCTTAGCCCTGATCCGCCCTTACCTCCCCTGC
CGGCTGAAGCGATCTATGCTATGTTTTCCCGGTTTATTTCGCGGTATCTA
GGACCTTTTTTCAGGGATGAAGGCACCCGGGTGTTGCAAGAGGGGTTTTC
ACTGTTCGAAATGCTGCTGGCGTACCATGACCCGGAGCTGGCGCAGCACC
TGAAAAAACACGACTTCCCTCCTGCCCTTTATCTGACGCCGTTTCTCGTC
ACCCTTTTTGCCCATAATCTCGAGATGTATCTCGTACATCGTTTGTGGGA
CAGCTATTTCTCTCTCGATGACCCTACCCTGGTTTATTTCCTCGCCCTCG
CCCTCCTCCGTCTCAGGCGGCCCCTGCTCCTTCCGCTGGACCTGGGAGGG
AGGCGGGGGTGGAGGTATTGGAGATGAATGCTAGGCGCCCAACTTCGCAC
CGAAATCAGCAAGGCACATATCGATACACCCAAGGTCAAGGCCTTCTGTC
GGAAAAACCCTGTGGGTATCGTGGTGGACAACAAAATAAGATCGAGAGTT
TGGTTAACTCTCCTCCTCGCCGGCGAAGCTCCCCCTCCCTTGCCCTCCGT
TCCCCCGGCCGCCCGCCTCCAAGGGGAAGATGCTCGCGTTGTGGATGCCG
ATGTGAGACGCACCCGCGGTTATCTTCCCATCTTCCAGGAACCCGCCACG
CAAGAAACGGTTCGGATGCTTTTGACAACGTTTTGCCTGGCCAATGGCGT
GCGGTACAAGCAAGGGATGCATGAGCTTCTGGCCCCCTTCGTCGCGCTTA
GCCCTGATCCGCCCTTACCTCCCCTGCCGGCTGAAGCGATCTATGCTATG
TTTTCCCGGTTTATTTCGCGGTATCTAGGACCTTTTTTCAGGGATGAAGG
CACCCGGGTGTTGCAAGAGGGGTTTTCACTGTTCGAAATGCTGCTGGCGT
ACCATGACCCGGAGCTGGCGCAGCACCTGAAAAAACACGACTTCCCTCCT
GCCCTTTATCTGACGCCGTTTCTCGTCACCCTTTTTGCCCATAATCTCGA
GATGTATCTCGTACATCGTTTGTGGGACAGCTATTTCTCTCTCGATGACC
CTACCCTGGTTTATTTCCTCGCCCTCGCCCTCCTCCGTCTCAGGCGGCCC
CTGCTCCTTCCGCTGGACCTGGGAGGGAGGCGGGGGTGGAGGTATTGGAG
ATGAATGCTAGGCGCCCAACTTCGCACCGAAATCAGCAAGGCACATATCG
ATACACCCAAGGTCAAGGCCTTCTGTCGGAAAAACCCTGTGGGTATCGTG
GTGGACAACAAAATAAGATCGAGAGTTTGGTTAACTCTCCTCCTCGCCGG
CGAAGCTCCCCCTCCCTTGCCCTCCGTTCCCCCGGCCGCCCGCCTCCAAG
GGGAAGATGCTCGCGTTGTGGATGCCGATGTGAGACGCACCCGCGGTTAT
CTTCCCATCTTCCAGGAACCCGCCACGCAAGAAACGGTTCGGATGCTTTT
GACAACGTTTTGCCTGGCCAATGGCGTGCGGTACAAGCAAGGGATGCATG
AGCTTCTGGCCCCCTTCGTCGCGCTTAGCCCTGATCCGCCCTTACCTCCC
CTGCCGGCTGAAGCGATCTATGCTATGTTTTCCCGGTTTATTTCGCGGTA
TCTAGGACCTTTTTTCAGGGATGAAGGCACCCGGGTGTTGCAAGAGGGGT
TTTCACTGTTCGAAATGCTGCTGGCGTACCATGACCCGGAGCTGGCGCAG
CACCTGAAAAAACACGACTTCCCTCCTGCCCTTTATCTGACGCCGTTTCT
CGTCACCCTTTTTGCCCATAATCTCGAGATGTATCTCGTACATCGTTTGT
GGGACAGCTATTTCTCTCTCGATGACCCTACCCTGGTTTATTTCCTCGCC
CTCGCCCTCCTCCGTCTCAGGCGGCCCCTGCTCCTTCCGCTGGACCTGGG
AGGGAGGCGGGGGTGGAGGTATTGGAGATGAATGCTAGGCGCCCAACTTC
GCACCGAAATCAGCAAGGCACATATCGATACACCCAAGGTCAAGGCCTTC
TGTCGGAAAAACCCTGTGGGTATCGTGGTGGACAACAAAATAAGATCGAG
AGTTTGGTTAACTCTCCTCCTCGCCGGCGAAGCTCCCCCTCCCTTGCCCT
CCGTTCCCCCGGCCGCCCGCCTCCAAGGGGAAGATGCTCGCGTTGTGGAT
GCCGATGTGAGACGCACCCGCGGTTATCTTCCCATCTTCCAGGAACCCGC
CACGCAAGAAACGGTTCGGATGCTTTTGACAACGTTTTGCCTGGCCAATG
GCGTGCGGTACAAGCAAGGGATGCATGAGCTTCTGGCCCCCTTCGTCGCG
CTTAGCCCTGATCCGCCCTTACCTCCCCTGCCGGCTGAAGCGATCTATGC
TATGTTTTCCCGGTTTATTTCGCGGTATCTAGGACCTTTTTTCAGGGATG
AAGGCACCCGGGTGTTGCAAGAGGGGTTTTCACTGTTCGAAATGCTGCTG
GCGTACCATGACCCGGAGCTGGCGCAGCACCTGAAAAAACACGACTTCCC
TCCTGCCCTTTATCTGACGCCGTTTCTCGTCACCCTTTTTGCCCATAATC
TCGAGATGTATCTCGTACATCGTTTGTGGGACAGCTATTTCTCTCTCGAT
GACCCTACCCTGGTTTATTTCCTCGCCCTCGCCCTCCTCCGTCTCAGGCG
GCCCCTGCTCCTTCCGCTGGACCTGGGAGGGAGGCGGGGGTGGAGGTATT
GGAGATGA
back to top
Synonyms
Publications