jgi.p|Nanoce1779_2|628722, mRNA_2735 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|628722
Unique NamemRNA_2735
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1064
Alignment locationscaffold_5:1059343..1061065 -

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Properties
Property NameValue
TranscriptId628808
TrackFilteredModels2
ProteinId628722
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:1059343..1061065 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|628722gene_2735Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|628722mRNA_2735-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2735CDS_2735Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2735 ID=mRNA_2735|Name=jgi.p|Nanoce1779_2|628722|organism=Nannochloropsis oceanica|type=mRNA|length=1064bp
AGGAAAAGGCAAGCGGGCTTGTGGGCGACAATACAAGACCAGAAAAGGAG
CCCTGACAACTGTCCAGAGGTCCACGGGGGATGGAAGGAGCCTCTGTAAT
AGTTATGATGGTGCATGGGTGATCATATCGATGGGAAAGGAAAAAGGGCA
CCATGCAAGGCCCATCATGGGAGCTTGTCGGCGAGTTGTTCACGAGTGTC
TCAGGCTGTGTGGTCATCTCCTTTTCTTTCAGCTCAGACTCCGTATGTGG
CCCTCGCATATTGTCTTGACATCTCGGACTCAGCACCCCCACCACGAGCT
CATGGCTGCCCAGGAGGAGATGCCAGCGTTGCGGCAGCGCTTGCAGGAGG
AAGCTCACATGCTAGCTAACGAGACCCTTCCTCGACTCAACGCCGACAAG
CGCGGCACCCTCGCTGTAACGATTCGAGATGTCCGTAACGTCCTTCCCCC
TCCCTCTTCCCCTTCAAAGGCCGTTGCCCCCGAGGAGGATGAGGAGGGAA
GGGAGGAAGAAGAGGAAGAGGAAAGAACAGAAGGCGACGTGGACGAGGAG
GGCGAGGCACTACTAAATGGCGAGGACGAGAGCAGCACCCAGCACCACCA
CCACCATCACAATCACCTGCATAAAAACCTCCGTTTCCTGGTGGAGGTCG
TGCCGGGGACGGTCGTCGCGAGTGAGGAAGGGGAGGATCAGGTTGAGGTG
GAGGAAGTGGGAGGCACTGCCTCCTTCCCCCTCTTATCACTGGAGGCGAA
GATTGTCGTTCATTTCGGTCCCCGGCTGGAGCATTACGTGAGGGTGCCGT
TACACAACCGTTACAAAGAGTCGGAGCTGGCCCAGTTGTCCGACTGGCAT
GCCTCGGCGGCGGTGCAAGAGGAGGACACTGAGACGGAAACCCCCGGGGT
GGAGGACTTGACGGGAGTGCCCGCGGTGCAGCTGTTACTGAAATTTAGCA
GAAAAAATAAGGAGGAGGTGGCGAGGGTCACGGAGAAGTTGAAGAGTCTG
CAGGAGGAGATGGCGGCCTTGGGTAGGGAGGAGGGTGAGGAGGAGGAAGG
CGAGGAAGAGGGGG
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protein sequence of jgi.p|Nanoce1779_2|628722

>mRNA_2735-protein ID=mRNA_2735-protein|Name=jgi.p|Nanoce1779_2|628722|organism=Nannochloropsis oceanica|type=polypeptide|length=311bp
MGKEKGHHARPIMGACRRVVHECLRLCGHLLFFQLRLRMWPSHIVLTSRT
QHPHHELMAAQEEMPALRQRLQEEAHMLANETLPRLNADKRGTLAVTIRD
VRNVLPPPSSPSKAVAPEEDEEGREEEEEEERTEGDVDEEGEALLNGEDE
SSTQHHHHHHNHLHKNLRFLVEVVPGTVVASEEGEDQVEVEEVGGTASFP
LLSLEAKIVVHFGPRLEHYVRVPLHNRYKESELAQLSDWHASAAVQEEDT
ETETPGVEDLTGVPAVQLLLKFSRKNKEEVARVTEKLKSLQEEMAALGRE
EGEEEEGEEEG
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mRNA from alignment at scaffold_5:1059343..1061065-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2735 ID=mRNA_2735|Name=jgi.p|Nanoce1779_2|628722|organism=Nannochloropsis oceanica|type=mRNA|length=1723bp|location=Sequence derived from alignment at scaffold_5:1059343..1061065- (Nannochloropsis oceanica)
AGGAAAAGGCAAGCGGGCTTGTGGGCGACAATACAAGACCAGAAAAGGAG
CCCTGACAACTGTCCAGAGGTCCACGGGGGATGGAAGGAGCCTCTGTAAT
AGTTATGATGGTGCATGGGTGATCATATCGATGGGAAAGGAAAAAGGGCA
CCATGCAAGGCCCATCATGGGAGCTTGTCGGCGAGTTGTTCACGAGTGTC
TCAGGCTGTGTGGTCATCTCCTTTTCTTTCAGCTCAGACTCCGTATGTGG
CCCTCGCATATTGTCTTGACATCTCGGTAAGAACTCATGCCTCTATTTTT
CCTCCACAGCGCAGATAGCTGCACTGCGTTGAACGTGTGAGACAGGGCCC
GCGAGGGCCGCCTCGTCCCCCCCCCCCCCCCCCACCAGCAGCAGCATCAT
CCAATCCAAGGATACTCCCGAGCTCCAACTCGCCCACTCACATCATCTCC
CACACACTTGCACAGGACTCAGCACCCCCACCACGAGCTCATGGCTGCCC
AGGAGGAGATGCCAGCGTTGCGGCAGCGCTTGCAGGTATGTCTGCGAAAG
AGAGAGGAGGGATTGTAGTGGAGGAGGGCGGTGCCTGACTACCCTTCTGA
TCATGGTCTGCGCTTTGCGAAGTATGCGCCAGAGTCCTGGCCCCTTTATC
ATGTCACAATGGGGCCTCTGATATGATTGCTTCGAGGTCTGCGTTGCGGC
TGGGGCTCGCGAAGCGGCACTGATGCGGTGACGACCAGGTGGAGGGCTGG
CTCTCAGCATGCATGTGACACGTTTCTTCCTGGCTTATTGCATCATTTTC
CGTCCTATGCTTAAAATATTTCCCGCGGCACATTTCGTCGAATGGTCGAA
CAATCCATATACCCGCTGACATGAAAGCATCAGCGCTTGTCTTCGGAAAG
TCATGATGTTTTCACTTTTTTCTCCGTATCGTCATCCGTCTTACATGCCC
CTCTCTCTCTCCCTCCCCCCCTCTCTCTCTCCCCGCTTACACAAACAACT
AATAGGAGGAAGCTCACATGCTAGCTAACGAGACCCTTCCTCGACTCAAC
GCCGACAAGCGCGGCACCCTCGCTGTAACGATTCGAGATGTCCGTAACGT
CCTTCCCCCTCCCTCTTCCCCTTCAAAGGCCGTTGCCCCCGAGGAGGATG
AGGAGGGAAGGGAGGAAGAAGAGGAAGAGGAAAGAACAGAAGGCGACGTG
GACGAGGAGGGCGAGGCACTACTAAATGGCGAGGACGAGAGCAGCACCCA
GCACCACCACCACCATCACAATCACCTGCATAAAAACCTCCGTTTCCTGG
TGGAGGTCGTGCCGGGGACGGTCGTCGCGAGTGAGGAAGGGGAGGATCAG
GTTGAGGTGGAGGAAGTGGGAGGCACTGCCTCCTTCCCCCTCTTATCACT
GGAGGCGAAGATTGTCGTTCATTTCGGTCCCCGGCTGGAGCATTACGTGA
GGGTGCCGTTACACAACCGTTACAAAGAGTCGGAGCTGGCCCAGTTGTCC
GACTGGCATGCCTCGGCGGCGGTGCAAGAGGAGGACACTGAGACGGAAAC
CCCCGGGGTGGAGGACTTGACGGGAGTGCCCGCGGTGCAGCTGTTACTGA
AATTTAGCAGAAAAAATAAGGAGGAGGTGGCGAGGGTCACGGAGAAGTTG
AAGAGTCTGCAGGAGGAGATGGCGGCCTTGGGTAGGGAGGAGGGTGAGGA
GGAGGAAGGCGAGGAAGAGGGGG
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Coding sequence (CDS) from alignment at scaffold_5:1059343..1061065-

>mRNA_2735 ID=mRNA_2735|Name=jgi.p|Nanoce1779_2|628722|organism=Nannochloropsis oceanica|type=CDS|length=2799bp|location=Sequence derived from alignment at scaffold_5:1059343..1061065- (Nannochloropsis oceanica)
GAGGAAGCTCACATGCTAGCTAACGAGACCCTTCCTCGACTCAACGCCGA
CAAGCGCGGCACCCTCGCTGTAACGATTCGAGATGTCCGTAACGTCCTTC
CCCCTCCCTCTTCCCCTTCAAAGGCCGTTGCCCCCGAGGAGGATGAGGAG
GGAAGGGAGGAAGAAGAGGAAGAGGAAAGAACAGAAGGCGACGTGGACGA
GGAGGGCGAGGCACTACTAAATGGCGAGGACGAGAGCAGCACCCAGCACC
ACCACCACCATCACAATCACCTGCATAAAAACCTCCGTTTCCTGGTGGAG
GTCGTGCCGGGGACGGTCGTCGCGAGTGAGGAAGGGGAGGATCAGGTTGA
GGTGGAGGAAGTGGGAGGCACTGCCTCCTTCCCCCTCTTATCACTGGAGG
CGAAGATTGTCGTTCATTTCGGTCCCCGGCTGGAGCATTACGTGAGGGTG
CCGTTACACAACCGTTACAAAGAGTCGGAGCTGGCCCAGTTGTCCGACTG
GCATGCCTCGGCGGCGGTGCAAGAGGAGGACACTGAGACGGAAACCCCCG
GGGTGGAGGACTTGACGGGAGTGCCCGCGGTGCAGCTGTTACTGAAATTT
AGCAGAAAAAATAAGGAGGAGGTGGCGAGGGTCACGGAGAAGTTGAAGAG
TCTGCAGGAGGAGATGGCGGCCTTGGGTAGGGAGGAGGGTGAGGAGGAGG
AAGGCGAGGAAGAGGGGGACTCAGCACCCCCACCACGAGCTCATGGCTGC
CCAGGAGGAGATGCCAGCGTTGCGGCAGCGCTTGCAGATGGGAAAGGAAA
AAGGGCACCATGCAAGGCCCATCATGGGAGCTTGTCGGCGAGTTGTTCAC
GAGTGTCTCAGGCTGTGTGGTCATCTCCTTTTCTTTCAGCTCAGACTCCG
TATGTGGCCCTCGCATATTGTCTTGACATCTCGGAGGAAGCTCACATGCT
AGCTAACGAGACCCTTCCTCGACTCAACGCCGACAAGCGCGGCACCCTCG
CTGTAACGATTCGAGATGTCCGTAACGTCCTTCCCCCTCCCTCTTCCCCT
TCAAAGGCCGTTGCCCCCGAGGAGGATGAGGAGGGAAGGGAGGAAGAAGA
GGAAGAGGAAAGAACAGAAGGCGACGTGGACGAGGAGGGCGAGGCACTAC
TAAATGGCGAGGACGAGAGCAGCACCCAGCACCACCACCACCATCACAAT
CACCTGCATAAAAACCTCCGTTTCCTGGTGGAGGTCGTGCCGGGGACGGT
CGTCGCGAGTGAGGAAGGGGAGGATCAGGTTGAGGTGGAGGAAGTGGGAG
GCACTGCCTCCTTCCCCCTCTTATCACTGGAGGCGAAGATTGTCGTTCAT
TTCGGTCCCCGGCTGGAGCATTACGTGAGGGTGCCGTTACACAACCGTTA
CAAAGAGTCGGAGCTGGCCCAGTTGTCCGACTGGCATGCCTCGGCGGCGG
TGCAAGAGGAGGACACTGAGACGGAAACCCCCGGGGTGGAGGACTTGACG
GGAGTGCCCGCGGTGCAGCTGTTACTGAAATTTAGCAGAAAAAATAAGGA
GGAGGTGGCGAGGGTCACGGAGAAGTTGAAGAGTCTGCAGGAGGAGATGG
CGGCCTTGGGTAGGGAGGAGGGTGAGGAGGAGGAAGGCGAGGAAGAGGGG
GACTCAGCACCCCCACCACGAGCTCATGGCTGCCCAGGAGGAGATGCCAG
CGTTGCGGCAGCGCTTGCAGATGGGAAAGGAAAAAGGGCACCATGCAAGG
CCCATCATGGGAGCTTGTCGGCGAGTTGTTCACGAGTGTCTCAGGCTGTG
TGGTCATCTCCTTTTCTTTCAGCTCAGACTCCGTATGTGGCCCTCGCATA
TTGTCTTGACATCTCGGAGGAAGCTCACATGCTAGCTAACGAGACCCTTC
CTCGACTCAACGCCGACAAGCGCGGCACCCTCGCTGTAACGATTCGAGAT
GTCCGTAACGTCCTTCCCCCTCCCTCTTCCCCTTCAAAGGCCGTTGCCCC
CGAGGAGGATGAGGAGGGAAGGGAGGAAGAAGAGGAAGAGGAAAGAACAG
AAGGCGACGTGGACGAGGAGGGCGAGGCACTACTAAATGGCGAGGACGAG
AGCAGCACCCAGCACCACCACCACCATCACAATCACCTGCATAAAAACCT
CCGTTTCCTGGTGGAGGTCGTGCCGGGGACGGTCGTCGCGAGTGAGGAAG
GGGAGGATCAGGTTGAGGTGGAGGAAGTGGGAGGCACTGCCTCCTTCCCC
CTCTTATCACTGGAGGCGAAGATTGTCGTTCATTTCGGTCCCCGGCTGGA
GCATTACGTGAGGGTGCCGTTACACAACCGTTACAAAGAGTCGGAGCTGG
CCCAGTTGTCCGACTGGCATGCCTCGGCGGCGGTGCAAGAGGAGGACACT
GAGACGGAAACCCCCGGGGTGGAGGACTTGACGGGAGTGCCCGCGGTGCA
GCTGTTACTGAAATTTAGCAGAAAAAATAAGGAGGAGGTGGCGAGGGTCA
CGGAGAAGTTGAAGAGTCTGCAGGAGGAGATGGCGGCCTTGGGTAGGGAG
GAGGGTGAGGAGGAGGAAGGCGAGGAAGAGGGGGACTCAGCACCCCCACC
ACGAGCTCATGGCTGCCCAGGAGGAGATGCCAGCGTTGCGGCAGCGCTTG
CAGATGGGAAAGGAAAAAGGGCACCATGCAAGGCCCATCATGGGAGCTTG
TCGGCGAGTTGTTCACGAGTGTCTCAGGCTGTGTGGTCATCTCCTTTTCT
TTCAGCTCAGACTCCGTATGTGGCCCTCGCATATTGTCTTGACATCTCG
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Synonyms
Publications