jgi.p|Nanoce1779_2|581321, mRNA_2730 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|581321
Unique NamemRNA_2730
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length617
Alignment locationscaffold_5:1045578..1046777 -

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Properties
Property NameValue
TranscriptId581407
TrackFilteredModels2
ProteinId581321
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:1045578..1046777 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|581321gene_2730Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|581321mRNA_2730-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2730CDS_2730Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2730 ID=mRNA_2730|Name=jgi.p|Nanoce1779_2|581321|organism=Nannochloropsis oceanica|type=mRNA|length=617bp
ACAGGCCGCTTTTTAATCCACCAGCCGGCTGCCTGCTCCATCCCTTGCTC
GTCGTTGCTGATTGCTTGCTCCTCTCCCTCCTAGCTACACACGTCTAATT
CATGTCGGCGCGACTTATGCAGTTTATCAACAGCCCCACAGGCCCCAAGA
CAACTCATTTCTGGGGGCCTGTGGCCAATTGGGGGTTTGTGTTGGCGGCA
ATCATCGACTCGCGGAAGCCACCGGAGACTATTTCTGCCAAGATGACGGG
TGTCCTCTCCGTTTATAGCATGATGTTTATGCGTTTTGCCTGGATGGTAC
AGCCACGAAACTACCTCTTGTTGGCGTGCCATGCCTCCAATGAATGCGCG
CAGCTTTATCAGCTGTCGCGGAGAATCAAATATGACCTGAGTCAGGAGGC
AAAGTGATAATTGGACGACGAATCATCTCACAGCACCGGCTACGATTGCT
CTAGATACGGATTTCTTAGTATGGGGGGAGGGAGAAAGGTTAGGGTGTGA
CGAGGTGCACAAGAGACGAGCGGAGAAAGTAGACTGGAGGAAAGAAAAAA
GTTGAAGGGTGAGGGGGAAAAAAAACGACGGCACTCGGTAGTATGTCGTT
TTAAACGCCGTGCAAAT
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protein sequence of jgi.p|Nanoce1779_2|581321

>mRNA_2730-protein ID=mRNA_2730-protein|Name=jgi.p|Nanoce1779_2|581321|organism=Nannochloropsis oceanica|type=polypeptide|length=102bp
MSARLMQFINSPTGPKTTHFWGPVANWGFVLAAIIDSRKPPETISAKMTG
VLSVYSMMFMRFAWMVQPRNYLLLACHASNECAQLYQLSRRIKYDLSQEA
K*
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mRNA from alignment at scaffold_5:1045578..1046777-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2730 ID=mRNA_2730|Name=jgi.p|Nanoce1779_2|581321|organism=Nannochloropsis oceanica|type=mRNA|length=1200bp|location=Sequence derived from alignment at scaffold_5:1045578..1046777- (Nannochloropsis oceanica)
ACAGGCCGCTTTTTAATCCACCAGCCGGCTGCCTGCTCCATCCCTTGCTC
GTCGTTGCTGATTGCTTGCTCCTCTCCCTCCTAGCTACACACGTCTAATT
CATGTCGGCGCGACTTATGCAGTTTATCAACAGCCCCACAGGCCCCAAGA
CAACTCATTTCTGGGGGCCTGTGGCCAATTGGGGGTTTGTGTTGGCGGTA
TGTGATGGCAGCGGGTGGGAGGAGAGGGAGGGAAGGAAGGCGGGGAAAGT
GGAGGAGGGAGGGTGGTAGGAAGAGGAGGTAGGGCGTCTATTCATGCGCT
GTCCACACTAATACAGGCAATCATCGACTCGCGGAAGCCACCGGAGACTA
TTTCTGCCAAGATGACGGGTGGTACGTACCTCCGCAAGCTGGGCCGTGTT
GATTTTTCTCCCTCTTTTTGGGGAGTATTAATTTTGTTCTTTTTTTTGGG
TGGGTGTGGGGGGGCAGAATCCGTTCCTTCACTTCCATCAACCTCGCTCG
CTCGCTCTTTCCTCTCCCTCTCTGTCATTCCTCTTTGTGCATGGACTGTT
TGGAGCGTATGCGTTGTTTATCGAGCTAGCCTCCCGCTGTTAACGACCCT
TGTGGCAATCCTGCCTTCAGCCCCCTCTAACGATCTCATTCACTCCTTCC
TCCCTCCTCTTTTTCCTCCCTCAGTCCTCTCCGTTTATAGCATGATGTTT
ATGCGTTTTGCCTGGATGGTACAGCCACGAAACTACCTCTTGTTGGCGTG
CCATGCCTCCAATGAATGCGCGCAGCTTTATCAGCTGTCGCGGAGAATCA
AATATGAGTAAGTGGGGAAGGGTGGAGGATCGGAGAAAGGGAGGCAAGGA
GAAAGGTCGGGAGAAAGGGCGACTTTGAAGATGAAGACGTGACTTGTGTT
ATTACGCTCCTATACTCGCAACCGACCTCAAGCATTCCTTGACCCACACA
CACACACACCCCACACAGCCTGAGTCAGGAGGCAAAGTGATAATTGGACG
ACGAATCATCTCACAGCACCGGCTACGATTGCTCTAGATACGGATTTCTT
AGTATGGGGGGAGGGAGAAAGGTTAGGGTGTGACGAGGTGCACAAGAGAC
GAGCGGAGAAAGTAGACTGGAGGAAAGAAAAAAGTTGAAGGGTGAGGGGG
AAAAAAAACGACGGCACTCGGTAGTATGTCGTTTTAAACGCCGTGCAAAT
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Coding sequence (CDS) from alignment at scaffold_5:1045578..1046777-

>mRNA_2730 ID=mRNA_2730|Name=jgi.p|Nanoce1779_2|581321|organism=Nannochloropsis oceanica|type=CDS|length=1224bp|location=Sequence derived from alignment at scaffold_5:1045578..1046777- (Nannochloropsis oceanica)
CCTGAGTCAGGAGGCAAAGTGATCCTCTCCGTTTATAGCATGATGTTTAT
GCGTTTTGCCTGGATGGTACAGCCACGAAACTACCTCTTGTTGGCGTGCC
ATGCCTCCAATGAATGCGCGCAGCTTTATCAGCTGTCGCGGAGAATCAAA
TATGAGCAATCATCGACTCGCGGAAGCCACCGGAGACTATTTCTGCCAAG
ATGACGGGTGATGTCGGCGCGACTTATGCAGTTTATCAACAGCCCCACAG
GCCCCAAGACAACTCATTTCTGGGGGCCTGTGGCCAATTGGGGGTTTGTG
TTGGCGCCTGAGTCAGGAGGCAAAGTGATCCTCTCCGTTTATAGCATGAT
GTTTATGCGTTTTGCCTGGATGGTACAGCCACGAAACTACCTCTTGTTGG
CGTGCCATGCCTCCAATGAATGCGCGCAGCTTTATCAGCTGTCGCGGAGA
ATCAAATATGAGCAATCATCGACTCGCGGAAGCCACCGGAGACTATTTCT
GCCAAGATGACGGGTGATGTCGGCGCGACTTATGCAGTTTATCAACAGCC
CCACAGGCCCCAAGACAACTCATTTCTGGGGGCCTGTGGCCAATTGGGGG
TTTGTGTTGGCGCCTGAGTCAGGAGGCAAAGTGATCCTCTCCGTTTATAG
CATGATGTTTATGCGTTTTGCCTGGATGGTACAGCCACGAAACTACCTCT
TGTTGGCGTGCCATGCCTCCAATGAATGCGCGCAGCTTTATCAGCTGTCG
CGGAGAATCAAATATGAGCAATCATCGACTCGCGGAAGCCACCGGAGACT
ATTTCTGCCAAGATGACGGGTGATGTCGGCGCGACTTATGCAGTTTATCA
ACAGCCCCACAGGCCCCAAGACAACTCATTTCTGGGGGCCTGTGGCCAAT
TGGGGGTTTGTGTTGGCGCCTGAGTCAGGAGGCAAAGTGATCCTCTCCGT
TTATAGCATGATGTTTATGCGTTTTGCCTGGATGGTACAGCCACGAAACT
ACCTCTTGTTGGCGTGCCATGCCTCCAATGAATGCGCGCAGCTTTATCAG
CTGTCGCGGAGAATCAAATATGAGCAATCATCGACTCGCGGAAGCCACCG
GAGACTATTTCTGCCAAGATGACGGGTGATGTCGGCGCGACTTATGCAGT
TTATCAACAGCCCCACAGGCCCCAAGACAACTCATTTCTGGGGGCCTGTG
GCCAATTGGGGGTTTGTGTTGGCG
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Synonyms
Publications