jgi.p|Nanoce1779_2|576779, mRNA_273 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|576779
Unique Name	mRNA_273
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2172
Alignment location	scaffold_3:677783..679954 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	576865
Track	FilteredModels2
ProteinId	576779

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_3	supercontig	scaffold_3:677783..679954 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|576779	gene_273	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|576779	mRNA_273-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_273	CDS_273	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_3:677783..679954+
coding sequence from alignment at scaffold_3:677783..679954+

mRNA sequence

>mRNA_273 ID=mRNA_273|Name=jgi.p|Nanoce1779_2|576779|organism=Nannochloropsis oceanica|type=mRNA|length=2172bp
ACGACAGCTATAGCACAGCTACGACAACGAGGACAAGGTGGCAACAGCAG
CGGACGGCGTAAGCCTGGTGCCCGTGCTCTGGAGGGAAAACGCGGACCCG
TCTCCCGGCAGCACACGACGAAGCGCCGCACGAAGCCTGCCTAGGGCCAC
CCCACACGACCGACGAGACAGCAAGCAGCATGACACTCCCCGACCCCTTT
CAGCACCAGCAGCAATCCGAGCGTCTGCCTCGGTTTGCGGGCATAATGTG
TTTCCTTTTAAGCGTGGGCTTGCTTTGCTGGGATTACGGTCTGCTGGAGA
AATGGGAAGGGGTCTCAGAGGCAGTGCCAACGATGTCTAGAGATTTGCGG
GTCCTCCAGTCTCGAAGTGTGTGGAACCAATGGTGGGAAGGTAGCGTACC
AATCAATACTGGGAAGGTTGGTCGCTCGGACGACGCCGCAAGGGCCGCGG
CATTGCCTTCTTTGGGGGAGAAGACGCTGGTCATTTACAACGTGCATCAC
TCTTCATCGTCGCTCGACAACTTGCACGGCGAAAACGTGGATTTCTTTCT
TAAGGTCGGCGTAGGGGGAGAGTCGGAGCACTTCGTGGACTATCTTTTCC
TGGTTCCACCTGCTCCGGCTGCTCCGCTGGGTTTGAAAAGCATTGAGGGC
AGAGAGAAAGAAGTGACGGGGCCGCCCGTTGTAATCCCTCCTGCTGTCAA
CGTCCGCGTCCTGGAACGGCCGCAAGATTGCTTAGGGTGCAGCGGCCTTC
AAGATATGCTAAGTAGCAGCAATTATAATAATTCTGACAGCAGTAGCGGC
GTCGGCAACGAGACAGTTGCAGGCCTGCCGTTGACAAGAGAGGGGCTCTT
GTCCCGCTACGCGCACTTTGTCTTTGTGGATTCATCGGTGCGAGGTCCTT
TCCTACCACGCTACATGCATCGTCCCCGTCCACGAAGAACGCATCAAAAT
CGCTTTACCGCCCCCCAGCCAACCAAGCCTTGGACGAGTGTGTTCACTGA
TCGACTAAGCGACGAGATAAAGCTGGTGGGGAGGTCTGTCAGTTGCGAGG
CAGAGCTCCACGTTCAGGCACCTGTGTGGGCCACAGACAGGATAGGACTA
CAGCTAATTTTGGAACAAGGCGTACTGGAGTGTGCGATGGACATGGAGAC
GGCGAGGGAGCGGCACGAGCTGGGAGCGACCCGTGCAGTGGTGGGGGCGG
GGTATGGTGTGGATTGTCTTATGCTCCGGTATCAAGGCTTAAATCTGACA
CGTTTGAGGGAGATAGAGGTGCCTTGCATGGCAGGGGATGACCCGAGCAT
TCCGCTGCTGAATGATGGTCTGCCAATAAATCCTTTGGAGGTGGTTTTTG
TGTTGGCGAGCCCACATTTGATGGCGTCCGACCTACCAGTGCGTCGATAC
ACTGATTATTTGCTTGGTCGGGGGGAAGTGAAGGACAGCGAGATGTACAC
GGAGCGGGGACAAGCTGTATTGGAAGCAAGAAGACAGCGGTTGGCGAGGA
TGGTGAAGGAGTGCAACGCAAGTTTGGATATGCCACATATGATGTCGAGA
TGTCCTGAGTGTATAAACCACGACATGGGGAAGGATGGTGAAAGAATTTT
TATAGAGCTTTATGTGATGGCTGGATATGATTTCCGGTTTACAATTGAGG
AAACTGATGTGACGAAGCTGTCGCATCATTATTGTGAATCGTTTGTGCGG
TACCAAGCCCCGGATGTGACGAGTTAAGGAAATATGCTAGATCAAGATGG
TCTACATATCATTCATATGATTATATGATTGAATCAACCATTTTGCTAGA
AATGATGTGTAGATAAGGTCAAAAGTGGAAACCATTGAGTCGGCTCCGCT
TGCGCGGTATCTCTTGAATTGCATGTTTTGACCCGGTAGGCCGCCAGGAT
CAGGACATGGCGACATGAGAGGCGCGTGGATGATAAATGGCAGGCATGTG
ATTTTACCTGCTTCCTACGGGAACCAGCTGCTATAATAGATGGAAAGAAA
AAACGTTTATGGGAGGCTTTCTCATAGCCTCCACCTTCGTCTGGTTTCAA
TGTGTACCCCAGGACGCCAAGCTAGTGGTAGCAAACTCAGGCTCACTCCC
TGATAAGCATCGTCCCCTTGCCCCCCCAAAATGCATCAAGTAGGAAAGAA
TAAATATCACGTTTGAACATGT

protein sequence of jgi.p|Nanoce1779_2|576779

>mRNA_273-protein ID=mRNA_273-protein|Name=jgi.p|Nanoce1779_2|576779|organism=Nannochloropsis oceanica|type=polypeptide|length=516bp
MTLPDPFQHQQQSERLPRFAGIMCFLLSVGLLCWDYGLLEKWEGVSEAVP
TMSRDLRVLQSRSVWNQWWEGSVPINTGKVGRSDDAARAAALPSLGEKTL
VIYNVHHSSSSLDNLHGENVDFFLKVGVGGESEHFVDYLFLVPPAPAAPL
GLKSIEGREKEVTGPPVVIPPAVNVRVLERPQDCLGCSGLQDMLSSSNYN
NSDSSSGVGNETVAGLPLTREGLLSRYAHFVFVDSSVRGPFLPRYMHRPR
PRRTHQNRFTAPQPTKPWTSVFTDRLSDEIKLVGRSVSCEAELHVQAPVW
ATDRIGLQLILEQGVLECAMDMETARERHELGATRAVVGAGYGVDCLMLR
YQGLNLTRLREIEVPCMAGDDPSIPLLNDGLPINPLEVVFVLASPHLMAS
DLPVRRYTDYLLGRGEVKDSEMYTERGQAVLEARRQRLARMVKECNASLD
MPHMMSRCPECINHDMGKDGERIFIELYVMAGYDFRFTIEETDVTKLSHH
YCESFVRYQAPDVTS*

mRNA from alignment at scaffold_3:677783..679954+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_273 ID=mRNA_273|Name=jgi.p|Nanoce1779_2|576779|organism=Nannochloropsis oceanica|type=mRNA|length=2172bp|location=Sequence derived from alignment at scaffold_3:677783..679954+ (Nannochloropsis oceanica)
ACGACAGCTATAGCACAGCTACGACAACGAGGACAAGGTGGCAACAGCAG
CGGACGGCGTAAGCCTGGTGCCCGTGCTCTGGAGGGAAAACGCGGACCCG
TCTCCCGGCAGCACACGACGAAGCGCCGCACGAAGCCTGCCTAGGGCCAC
CCCACACGACCGACGAGACAGCAAGCAGCATGACACTCCCCGACCCCTTT
CAGCACCAGCAGCAATCCGAGCGTCTGCCTCGGTTTGCGGGCATAATGTG
TTTCCTTTTAAGCGTGGGCTTGCTTTGCTGGGATTACGGTCTGCTGGAGA
AATGGGAAGGGGTCTCAGAGGCAGTGCCAACGATGTCTAGAGATTTGCGG
GTCCTCCAGTCTCGAAGTGTGTGGAACCAATGGTGGGAAGGTAGCGTACC
AATCAATACTGGGAAGGTTGGTCGCTCGGACGACGCCGCAAGGGCCGCGG
CATTGCCTTCTTTGGGGGAGAAGACGCTGGTCATTTACAACGTGCATCAC
TCTTCATCGTCGCTCGACAACTTGCACGGCGAAAACGTGGATTTCTTTCT
TAAGGTCGGCGTAGGGGGAGAGTCGGAGCACTTCGTGGACTATCTTTTCC
TGGTTCCACCTGCTCCGGCTGCTCCGCTGGGTTTGAAAAGCATTGAGGGC
AGAGAGAAAGAAGTGACGGGGCCGCCCGTTGTAATCCCTCCTGCTGTCAA
CGTCCGCGTCCTGGAACGGCCGCAAGATTGCTTAGGGTGCAGCGGCCTTC
AAGATATGCTAAGTAGCAGCAATTATAATAATTCTGACAGCAGTAGCGGC
GTCGGCAACGAGACAGTTGCAGGCCTGCCGTTGACAAGAGAGGGGCTCTT
GTCCCGCTACGCGCACTTTGTCTTTGTGGATTCATCGGTGCGAGGTCCTT
TCCTACCACGCTACATGCATCGTCCCCGTCCACGAAGAACGCATCAAAAT
CGCTTTACCGCCCCCCAGCCAACCAAGCCTTGGACGAGTGTGTTCACTGA
TCGACTAAGCGACGAGATAAAGCTGGTGGGGAGGTCTGTCAGTTGCGAGG
CAGAGCTCCACGTTCAGGCACCTGTGTGGGCCACAGACAGGATAGGACTA
CAGCTAATTTTGGAACAAGGCGTACTGGAGTGTGCGATGGACATGGAGAC
GGCGAGGGAGCGGCACGAGCTGGGAGCGACCCGTGCAGTGGTGGGGGCGG
GGTATGGTGTGGATTGTCTTATGCTCCGGTATCAAGGCTTAAATCTGACA
CGTTTGAGGGAGATAGAGGTGCCTTGCATGGCAGGGGATGACCCGAGCAT
TCCGCTGCTGAATGATGGTCTGCCAATAAATCCTTTGGAGGTGGTTTTTG
TGTTGGCGAGCCCACATTTGATGGCGTCCGACCTACCAGTGCGTCGATAC
ACTGATTATTTGCTTGGTCGGGGGGAAGTGAAGGACAGCGAGATGTACAC
GGAGCGGGGACAAGCTGTATTGGAAGCAAGAAGACAGCGGTTGGCGAGGA
TGGTGAAGGAGTGCAACGCAAGTTTGGATATGCCACATATGATGTCGAGA
TGTCCTGAGTGTATAAACCACGACATGGGGAAGGATGGTGAAAGAATTTT
TATAGAGCTTTATGTGATGGCTGGATATGATTTCCGGTTTACAATTGAGG
AAACTGATGTGACGAAGCTGTCGCATCATTATTGTGAATCGTTTGTGCGG
TACCAAGCCCCGGATGTGACGAGTTAAGGAAATATGCTAGATCAAGATGG
TCTACATATCATTCATATGATTATATGATTGAATCAACCATTTTGCTAGA
AATGATGTGTAGATAAGGTCAAAAGTGGAAACCATTGAGTCGGCTCCGCT
TGCGCGGTATCTCTTGAATTGCATGTTTTGACCCGGTAGGCCGCCAGGAT
CAGGACATGGCGACATGAGAGGCGCGTGGATGATAAATGGCAGGCATGTG
ATTTTACCTGCTTCCTACGGGAACCAGCTGCTATAATAGATGGAAAGAAA
AAACGTTTATGGGAGGCTTTCTCATAGCCTCCACCTTCGTCTGGTTTCAA
TGTGTACCCCAGGACGCCAAGCTAGTGGTAGCAAACTCAGGCTCACTCCC
TGATAAGCATCGTCCCCTTGCCCCCCCAAAATGCATCAAGTAGGAAAGAA
TAAATATCACGTTTGAACATGT

Coding sequence (CDS) from alignment at scaffold_3:677783..679954+

>mRNA_273 ID=mRNA_273|Name=jgi.p|Nanoce1779_2|576779|organism=Nannochloropsis oceanica|type=CDS|length=1548bp|location=Sequence derived from alignment at scaffold_3:677783..679954+ (Nannochloropsis oceanica)
ATGACACTCCCCGACCCCTTTCAGCACCAGCAGCAATCCGAGCGTCTGCC
TCGGTTTGCGGGCATAATGTGTTTCCTTTTAAGCGTGGGCTTGCTTTGCT
GGGATTACGGTCTGCTGGAGAAATGGGAAGGGGTCTCAGAGGCAGTGCCA
ACGATGTCTAGAGATTTGCGGGTCCTCCAGTCTCGAAGTGTGTGGAACCA
ATGGTGGGAAGGTAGCGTACCAATCAATACTGGGAAGGTTGGTCGCTCGG
ACGACGCCGCAAGGGCCGCGGCATTGCCTTCTTTGGGGGAGAAGACGCTG
GTCATTTACAACGTGCATCACTCTTCATCGTCGCTCGACAACTTGCACGG
CGAAAACGTGGATTTCTTTCTTAAGGTCGGCGTAGGGGGAGAGTCGGAGC
ACTTCGTGGACTATCTTTTCCTGGTTCCACCTGCTCCGGCTGCTCCGCTG
GGTTTGAAAAGCATTGAGGGCAGAGAGAAAGAAGTGACGGGGCCGCCCGT
TGTAATCCCTCCTGCTGTCAACGTCCGCGTCCTGGAACGGCCGCAAGATT
GCTTAGGGTGCAGCGGCCTTCAAGATATGCTAAGTAGCAGCAATTATAAT
AATTCTGACAGCAGTAGCGGCGTCGGCAACGAGACAGTTGCAGGCCTGCC
GTTGACAAGAGAGGGGCTCTTGTCCCGCTACGCGCACTTTGTCTTTGTGG
ATTCATCGGTGCGAGGTCCTTTCCTACCACGCTACATGCATCGTCCCCGT
CCACGAAGAACGCATCAAAATCGCTTTACCGCCCCCCAGCCAACCAAGCC
TTGGACGAGTGTGTTCACTGATCGACTAAGCGACGAGATAAAGCTGGTGG
GGAGGTCTGTCAGTTGCGAGGCAGAGCTCCACGTTCAGGCACCTGTGTGG
GCCACAGACAGGATAGGACTACAGCTAATTTTGGAACAAGGCGTACTGGA
GTGTGCGATGGACATGGAGACGGCGAGGGAGCGGCACGAGCTGGGAGCGA
CCCGTGCAGTGGTGGGGGCGGGGTATGGTGTGGATTGTCTTATGCTCCGG
TATCAAGGCTTAAATCTGACACGTTTGAGGGAGATAGAGGTGCCTTGCAT
GGCAGGGGATGACCCGAGCATTCCGCTGCTGAATGATGGTCTGCCAATAA
ATCCTTTGGAGGTGGTTTTTGTGTTGGCGAGCCCACATTTGATGGCGTCC
GACCTACCAGTGCGTCGATACACTGATTATTTGCTTGGTCGGGGGGAAGT
GAAGGACAGCGAGATGTACACGGAGCGGGGACAAGCTGTATTGGAAGCAA
GAAGACAGCGGTTGGCGAGGATGGTGAAGGAGTGCAACGCAAGTTTGGAT
ATGCCACATATGATGTCGAGATGTCCTGAGTGTATAAACCACGACATGGG
GAAGGATGGTGAAAGAATTTTTATAGAGCTTTATGTGATGGCTGGATATG
ATTTCCGGTTTACAATTGAGGAAACTGATGTGACGAAGCTGTCGCATCAT
TATTGTGAATCGTTTGTGCGGTACCAAGCCCCGGATGTGACGAGTTAA

Synonyms

Publications