jgi.p|Nanoce1779_2|337315, mRNA_2728 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|337315
Unique NamemRNA_2728
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1077
Alignment locationscaffold_5:1040011..1041087 -

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Properties
Property NameValue
TranscriptId337401
TrackFilteredModels2
ProteinId337315
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:1040011..1041087 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|337315gene_2728Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|337315mRNA_2728-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2728CDS_2728Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2728 ID=mRNA_2728|Name=jgi.p|Nanoce1779_2|337315|organism=Nannochloropsis oceanica|type=mRNA|length=1077bp
CTCACATTTATAAATGTTGACTAAAAGGCCCCTGAATCGGCTAGAAAACA
TGGTTTAAGTCTTTTTGCGATTTTAAAAAAAAACTTCTTTTATGGTCCGC
TACGTAAACTCATATAGCATACACCCCTATGAAACCCAGCAGTTTCTAGG
CTTCGTAGCAAATGGTGACGACGCGCAGTAGAAGCTTGTCCATCAAAATT
CCTTTGAATGTGGTGGATAAGGTAAGTAAGAGCGATAGAAGAAAATGCGT
GGCTCCCTTTTCCCCCTATACCTGTCTTGTGCAAACTGACACGCTTTTAC
CGTCCACCACCCAGATAACGTTGGTCTGGTTCATCCTTGATGCCTTCACA
CACCTCTCCATCGAAGCTGGCTATGTGTTTCTCGCTCTTGGCCCCACCGC
CAATCAATCCTCTTCCTATATGGCCTTCATTTGGCGGGAATACGCACGGG
CCGACTCTCGCTGGGCCGGACGGGACCCTACCATTCTCTCGATCGAGATA
TTGACTGCCTTCCTCCTGGGACCTCTCTGTTTGCTCGCCGCCTGGGCGAT
ATATACCCGCCGGCCCTACAGACACCTGGTTCAACTTTCTATTTCACTCT
TTGAGCTGTATGGCGGTTGGATGACTTTTATGCCTGATATTATATCAGGG
GCACACTCCTTGGCATTGCATGATCCCCTGCTTTTGTGGGTGCATTTAGT
ATTTATGAATGGGCTTTGGATTCTTTTACCCATACTTCTGGCTTGGGAAA
GTGGAGTGTACCTGATCCATGCATGCACGATCGCCAAGACCGAAGAAAGT
GGAAAGAGGAGGGAACATGTGGGTGGCTTGCCATCCATAGGGTGGTTTTG
GATGATTGCAGGGATTATGGTAGTATACGTGGTATTAGTGCCACTGATTT
TGCTGGTCTCTGCGGACCGTCCACCGGCGGTCATACCAGGGATTAAGTGA
AGGGCGAGTTGGAAGGGGGGAGGAAGAGGGAATGCGAAGATACAAAGTAC
CACGATAGAGCCGTAAAGTAGAGCATTGTACCAAGCGGGCTAGCAAGAGC
GACATGGACGGGTCAGCTCCACATTTG
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protein sequence of jgi.p|Nanoce1779_2|337315

>mRNA_2728-protein ID=mRNA_2728-protein|Name=jgi.p|Nanoce1779_2|337315|organism=Nannochloropsis oceanica|type=polypeptide|length=263bp
MVTTRSRSLSIKIPLNVVDKVSKSDRRKCVAPFSPYTCLVQTDTLLPSTT
QITLVWFILDAFTHLSIEAGYVFLALGPTANQSSSYMAFIWREYARADSR
WAGRDPTILSIEILTAFLLGPLCLLAAWAIYTRRPYRHLVQLSISLFELY
GGWMTFMPDIISGAHSLALHDPLLLWVHLVFMNGLWILLPILLAWESGVY
LIHACTIAKTEESGKRREHVGGLPSIGWFWMIAGIMVVYVVLVPLILLVS
ADRPPAVIPGIK*
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mRNA from alignment at scaffold_5:1040011..1041087-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2728 ID=mRNA_2728|Name=jgi.p|Nanoce1779_2|337315|organism=Nannochloropsis oceanica|type=mRNA|length=1077bp|location=Sequence derived from alignment at scaffold_5:1040011..1041087- (Nannochloropsis oceanica)
CTCACATTTATAAATGTTGACTAAAAGGCCCCTGAATCGGCTAGAAAACA
TGGTTTAAGTCTTTTTGCGATTTTAAAAAAAAACTTCTTTTATGGTCCGC
TACGTAAACTCATATAGCATACACCCCTATGAAACCCAGCAGTTTCTAGG
CTTCGTAGCAAATGGTGACGACGCGCAGTAGAAGCTTGTCCATCAAAATT
CCTTTGAATGTGGTGGATAAGGTAAGTAAGAGCGATAGAAGAAAATGCGT
GGCTCCCTTTTCCCCCTATACCTGTCTTGTGCAAACTGACACGCTTTTAC
CGTCCACCACCCAGATAACGTTGGTCTGGTTCATCCTTGATGCCTTCACA
CACCTCTCCATCGAAGCTGGCTATGTGTTTCTCGCTCTTGGCCCCACCGC
CAATCAATCCTCTTCCTATATGGCCTTCATTTGGCGGGAATACGCACGGG
CCGACTCTCGCTGGGCCGGACGGGACCCTACCATTCTCTCGATCGAGATA
TTGACTGCCTTCCTCCTGGGACCTCTCTGTTTGCTCGCCGCCTGGGCGAT
ATATACCCGCCGGCCCTACAGACACCTGGTTCAACTTTCTATTTCACTCT
TTGAGCTGTATGGCGGTTGGATGACTTTTATGCCTGATATTATATCAGGG
GCACACTCCTTGGCATTGCATGATCCCCTGCTTTTGTGGGTGCATTTAGT
ATTTATGAATGGGCTTTGGATTCTTTTACCCATACTTCTGGCTTGGGAAA
GTGGAGTGTACCTGATCCATGCATGCACGATCGCCAAGACCGAAGAAAGT
GGAAAGAGGAGGGAACATGTGGGTGGCTTGCCATCCATAGGGTGGTTTTG
GATGATTGCAGGGATTATGGTAGTATACGTGGTATTAGTGCCACTGATTT
TGCTGGTCTCTGCGGACCGTCCACCGGCGGTCATACCAGGGATTAAGTGA
AGGGCGAGTTGGAAGGGGGGAGGAAGAGGGAATGCGAAGATACAAAGTAC
CACGATAGAGCCGTAAAGTAGAGCATTGTACCAAGCGGGCTAGCAAGAGC
GACATGGACGGGTCAGCTCCACATTTG
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Coding sequence (CDS) from alignment at scaffold_5:1040011..1041087-

>mRNA_2728 ID=mRNA_2728|Name=jgi.p|Nanoce1779_2|337315|organism=Nannochloropsis oceanica|type=CDS|length=789bp|location=Sequence derived from alignment at scaffold_5:1040011..1041087- (Nannochloropsis oceanica)
ATGGTGACGACGCGCAGTAGAAGCTTGTCCATCAAAATTCCTTTGAATGT
GGTGGATAAGGTAAGTAAGAGCGATAGAAGAAAATGCGTGGCTCCCTTTT
CCCCCTATACCTGTCTTGTGCAAACTGACACGCTTTTACCGTCCACCACC
CAGATAACGTTGGTCTGGTTCATCCTTGATGCCTTCACACACCTCTCCAT
CGAAGCTGGCTATGTGTTTCTCGCTCTTGGCCCCACCGCCAATCAATCCT
CTTCCTATATGGCCTTCATTTGGCGGGAATACGCACGGGCCGACTCTCGC
TGGGCCGGACGGGACCCTACCATTCTCTCGATCGAGATATTGACTGCCTT
CCTCCTGGGACCTCTCTGTTTGCTCGCCGCCTGGGCGATATATACCCGCC
GGCCCTACAGACACCTGGTTCAACTTTCTATTTCACTCTTTGAGCTGTAT
GGCGGTTGGATGACTTTTATGCCTGATATTATATCAGGGGCACACTCCTT
GGCATTGCATGATCCCCTGCTTTTGTGGGTGCATTTAGTATTTATGAATG
GGCTTTGGATTCTTTTACCCATACTTCTGGCTTGGGAAAGTGGAGTGTAC
CTGATCCATGCATGCACGATCGCCAAGACCGAAGAAAGTGGAAAGAGGAG
GGAACATGTGGGTGGCTTGCCATCCATAGGGTGGTTTTGGATGATTGCAG
GGATTATGGTAGTATACGTGGTATTAGTGCCACTGATTTTGCTGGTCTCT
GCGGACCGTCCACCGGCGGTCATACCAGGGATTAAGTGA
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Synonyms
Publications