Properties
Property Name | Value |
TranscriptId | 669353 |
Track | FilteredModels2 |
ProteinId | 669267 |
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_5 | supercontig | scaffold_5:1038667..1039997 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_2727 ID=mRNA_2727|Name=jgi.p|Nanoce1779_2|669267|organism=Nannochloropsis oceanica|type=mRNA|length=1331bp AGCACAGCTCGTTTGAGCAAAGCATTCGATCAAGTTCTACACCATGGCTT CTGGCGCCGGGAAGCTGACTACCAGCACACGGAGGACGCCTTCTCCTTCT TCGCATTCGCCCATTCATCCCATCCATGACCACGGCCGACACACGCCGCC CATTGCTGAAGAGAACCTCAAAAACATCGATCTGGGGAACGTTGGGAGTG GAGGCGGGCATGAGCACTTGGGGCGTTCGCCTTCCCACGCAGCTGTCGTT CCAATCCACGCTAACTCAGCCCATGCTTCAGCCTCTTCCTCCGCCTCTGC ATCCGCATACGAGGAGACATACCCACCAAAACAGAGTCGGGGACACGGAC GGGGTCATGCAGCATCATCGGTGTGGACGTTGGTTTTGGCTCAAATAAAA CGGTTCGATATTGAGTTGTCCATAGGTTTCCTCATCACCATTTTTATTTG CTCCGCCATCGCCGTTTCTGCGCAGGACGAGGGGTGGTTCCTCGCTACAG CACCATTGGAGAACTTCCCACTCGTCAATACCCTGGCTTCATTCAGCATT GGTCTTAGCAGCTATGTCACCGAGGCGCATGGTGGAGACGAACAGCTCAC CCTATACCGACACGAAGGCCCCATTTCTGAGCTTTCTCTTCGAGCAGGAG ATATTGCCGTGTCCCTGCACATATGCCTTATTGCTTCAGTAGTTTTGTCT GTAGGTTTGCTCTGGTACGTATTGCAACTTCATGATTACCTGAAGAGCAG TGAGATTTTGCCTTCGCGCGAACTGACCACGCGTCTCCTGGGCCTCAAGG CTCTGACGCTTGGCCTGTTGCTGCTGGGGTTGGGAACAGGTGCATTCCGC GCTGTTATTTGGAATGATTTGAAGGAACATCACAACGACGGCAGCAGTAG CAGCAGTAGCAGTAGCAGCAGTGGTGGTCCAACGTCGTTTACGAATATTG AATCAAGCGAGCTCTTCCTCGAGACGCGCTATGCTTATTCTCTCACAATA GCAGCGTGGTTCCTCTGGCTAGTTGTCGGGTCTATCCTTATGTTACGGCC GTGTTACCGTAACATAAATATTTATATGATACGGGGCCACGGGCGCGAGG TTAGCCGCGATGAGGGAGGAGAAGAAGGAAGGAGCTGAGGTGAGAGAGAT GGAGGGAGTAGAGAAGGAGTTCATGGAGGAGATGCAGGCTGCGGAGGTAT AGCTTGACAAATGGAATGGAGAATGGTGGCATTGACATGTAGCAAAAGTA GACATGCTTGGATTTCCTTGAGATAAGTGTTTTATGTGCATGTAAGAAAT GGAAAAGAAAGAAGCGGAGAACAGTTGCTGG back to topprotein sequence of jgi.p|Nanoce1779_2|669267 >mRNA_2727-protein ID=mRNA_2727-protein|Name=jgi.p|Nanoce1779_2|669267|organism=Nannochloropsis oceanica|type=polypeptide|length=365bp MASGAGKLTTSTRRTPSPSSHSPIHPIHDHGRHTPPIAEENLKNIDLGNV GSGGGHEHLGRSPSHAAVVPIHANSAHASASSSASASAYEETYPPKQSRG HGRGHAASSVWTLVLAQIKRFDIELSIGFLITIFICSAIAVSAQDEGWFL ATAPLENFPLVNTLASFSIGLSSYVTEAHGGDEQLTLYRHEGPISELSLR AGDIAVSLHICLIASVVLSVGLLWYVLQLHDYLKSSEILPSRELTTRLLG LKALTLGLLLLGLGTGAFRAVIWNDLKEHHNDGSSSSSSSSSSGGPTSFT NIESSELFLETRYAYSLTIAAWFLWLVVGSILMLRPCYRNINIYMIRGHG REVSRDEGGEEGRS* back to topmRNA from alignment at scaffold_5:1038667..1039997+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_2727 ID=mRNA_2727|Name=jgi.p|Nanoce1779_2|669267|organism=Nannochloropsis oceanica|type=mRNA|length=1331bp|location=Sequence derived from alignment at scaffold_5:1038667..1039997+ (Nannochloropsis oceanica) AGCACAGCTCGTTTGAGCAAAGCATTCGATCAAGTTCTACACCATGGCTT
CTGGCGCCGGGAAGCTGACTACCAGCACACGGAGGACGCCTTCTCCTTCT
TCGCATTCGCCCATTCATCCCATCCATGACCACGGCCGACACACGCCGCC
CATTGCTGAAGAGAACCTCAAAAACATCGATCTGGGGAACGTTGGGAGTG
GAGGCGGGCATGAGCACTTGGGGCGTTCGCCTTCCCACGCAGCTGTCGTT
CCAATCCACGCTAACTCAGCCCATGCTTCAGCCTCTTCCTCCGCCTCTGC
ATCCGCATACGAGGAGACATACCCACCAAAACAGAGTCGGGGACACGGAC
GGGGTCATGCAGCATCATCGGTGTGGACGTTGGTTTTGGCTCAAATAAAA
CGGTTCGATATTGAGTTGTCCATAGGTTTCCTCATCACCATTTTTATTTG
CTCCGCCATCGCCGTTTCTGCGCAGGACGAGGGGTGGTTCCTCGCTACAG
CACCATTGGAGAACTTCCCACTCGTCAATACCCTGGCTTCATTCAGCATT
GGTCTTAGCAGCTATGTCACCGAGGCGCATGGTGGAGACGAACAGCTCAC
CCTATACCGACACGAAGGCCCCATTTCTGAGCTTTCTCTTCGAGCAGGAG
ATATTGCCGTGTCCCTGCACATATGCCTTATTGCTTCAGTAGTTTTGTCT
GTAGGTTTGCTCTGGTACGTATTGCAACTTCATGATTACCTGAAGAGCAG
TGAGATTTTGCCTTCGCGCGAACTGACCACGCGTCTCCTGGGCCTCAAGG
CTCTGACGCTTGGCCTGTTGCTGCTGGGGTTGGGAACAGGTGCATTCCGC
GCTGTTATTTGGAATGATTTGAAGGAACATCACAACGACGGCAGCAGTAG
CAGCAGTAGCAGTAGCAGCAGTGGTGGTCCAACGTCGTTTACGAATATTG
AATCAAGCGAGCTCTTCCTCGAGACGCGCTATGCTTATTCTCTCACAATA
GCAGCGTGGTTCCTCTGGCTAGTTGTCGGGTCTATCCTTATGTTACGGCC
GTGTTACCGTAACATAAATATTTATATGATACGGGGCCACGGGCGCGAGG
TTAGCCGCGATGAGGGAGGAGAAGAAGGAAGGAGCTGAGGTGAGAGAGAT
GGAGGGAGTAGAGAAGGAGTTCATGGAGGAGATGCAGGCTGCGGAGGTAT
AGCTTGACAAATGGAATGGAGAATGGTGGCATTGACATGTAGCAAAAGTA
GACATGCTTGGATTTCCTTGAGATAAGTGTTTTATGTGCATGTAAGAAAT
GGAAAAGAAAGAAGCGGAGAACAGTTGCTGG back to topCoding sequence (CDS) from alignment at scaffold_5:1038667..1039997+ >mRNA_2727 ID=mRNA_2727|Name=jgi.p|Nanoce1779_2|669267|organism=Nannochloropsis oceanica|type=CDS|length=1095bp|location=Sequence derived from alignment at scaffold_5:1038667..1039997+ (Nannochloropsis oceanica) ATGGCTTCTGGCGCCGGGAAGCTGACTACCAGCACACGGAGGACGCCTTC TCCTTCTTCGCATTCGCCCATTCATCCCATCCATGACCACGGCCGACACA CGCCGCCCATTGCTGAAGAGAACCTCAAAAACATCGATCTGGGGAACGTT GGGAGTGGAGGCGGGCATGAGCACTTGGGGCGTTCGCCTTCCCACGCAGC TGTCGTTCCAATCCACGCTAACTCAGCCCATGCTTCAGCCTCTTCCTCCG CCTCTGCATCCGCATACGAGGAGACATACCCACCAAAACAGAGTCGGGGA CACGGACGGGGTCATGCAGCATCATCGGTGTGGACGTTGGTTTTGGCTCA AATAAAACGGTTCGATATTGAGTTGTCCATAGGTTTCCTCATCACCATTT TTATTTGCTCCGCCATCGCCGTTTCTGCGCAGGACGAGGGGTGGTTCCTC GCTACAGCACCATTGGAGAACTTCCCACTCGTCAATACCCTGGCTTCATT CAGCATTGGTCTTAGCAGCTATGTCACCGAGGCGCATGGTGGAGACGAAC AGCTCACCCTATACCGACACGAAGGCCCCATTTCTGAGCTTTCTCTTCGA GCAGGAGATATTGCCGTGTCCCTGCACATATGCCTTATTGCTTCAGTAGT TTTGTCTGTAGGTTTGCTCTGGTACGTATTGCAACTTCATGATTACCTGA AGAGCAGTGAGATTTTGCCTTCGCGCGAACTGACCACGCGTCTCCTGGGC CTCAAGGCTCTGACGCTTGGCCTGTTGCTGCTGGGGTTGGGAACAGGTGC ATTCCGCGCTGTTATTTGGAATGATTTGAAGGAACATCACAACGACGGCA GCAGTAGCAGCAGTAGCAGTAGCAGCAGTGGTGGTCCAACGTCGTTTACG AATATTGAATCAAGCGAGCTCTTCCTCGAGACGCGCTATGCTTATTCTCT CACAATAGCAGCGTGGTTCCTCTGGCTAGTTGTCGGGTCTATCCTTATGT TACGGCCGTGTTACCGTAACATAAATATTTATATGATACGGGGCCACGGG CGCGAGGTTAGCCGCGATGAGGGAGGAGAAGAAGGAAGGAGCTGA back to top
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