jgi.p|Nanoce1779_2|337135, mRNA_2725 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|337135
Unique NamemRNA_2725
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length827
Alignment locationscaffold_5:1033491..1034843 -

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Properties
Property NameValue
TranscriptId337221
TrackFilteredModels2
ProteinId337135
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:1033491..1034843 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|337135gene_2725Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|337135mRNA_2725-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2725CDS_2725Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2725 ID=mRNA_2725|Name=jgi.p|Nanoce1779_2|337135|organism=Nannochloropsis oceanica|type=mRNA|length=827bp
GCCCCTTCATTTGTCAAAATCTTCTGTCCACCCTCCCTGGATCTCGGCGT
CGAGCACGCACTCATGCATTCGCATTTTATCCTCATTCATCACAGAGAGC
AGCAACCCACTAATCACGCGGACTGTCTCCCACCGGCGTCGTCCCCCTCC
GAACGACAGAGCAACCAGCATCATTCGGAGCCTTTACTTATGTCGTTCAC
ATCGATACTACGGACCATCATATTTAACTTGGGCGCCCTGGCGGTGGCAT
ACGTCCTCCTTCTGAGTGGTGTGCACAAATTTACGTACAAGCTTTGGCGC
GTCGAGCTCTCCCAAGGTCTCTACCGCTCCCTCAACAAGTCCTACCTCCT
GGCGACCGAGCAGGCCTACAAACACATCGACGCCTTTTTTGCCTCCCACC
CGTCTCTCCCTCCCGCCCTCCCGCGCTACCATGCCTCAACCATTAAGGCC
TTCGTTGGAGTGTTTGAATTACTGCTGGCTTTTCTCTGGCTGACGCGACG
CTGGCGGGCCGCGGCATGGGGAAGCGCGTTGTGCTTTGCCTCGTGGATGG
CCATTGCGTGGTCAGATTTCTTGCCGGACTCGGCGGGGGGGGAGGAAGGC
ATGTCATTCGCCTTATTCTTCTTCGGCTTGTCGCTGGGCTTGCTATTTAC
CGGGCCGAGGAGTGGCAAGAATATTGGAGGGGACGTGGCGAGGGAAGGTG
CAGGCGGCGCCTCATCGAAGAAGCAGAGATGAAAGAAAGGGATGAAAGGG
ATAGGGCATGCTGCCTTTGCAAATTGTTCGTTTTGGGGACTCAGCAGATG
ACGAGGACGAAAGGCTATATCGCAAAT
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protein sequence of jgi.p|Nanoce1779_2|337135

>mRNA_2725-protein ID=mRNA_2725-protein|Name=jgi.p|Nanoce1779_2|337135|organism=Nannochloropsis oceanica|type=polypeptide|length=223bp
MHSHFILIHHREQQPTNHADCLPPASSPSERQSNQHHSEPLLMSFTSILR
TIIFNLGALAVAYVLLLSGVHKFTYKLWRVELSQGLYRSLNKSYLLATEQ
AYKHIDAFFASHPSLPPALPRYHASTIKAFVGVFELLLAFLWLTRRWRAA
AWGSALCFASWMAIAWSDFLPDSAGGEEGMSFALFFFGLSLGLLFTGPRS
GKNIGGDVAREGAGGASSKKQR*
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mRNA from alignment at scaffold_5:1033491..1034843-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2725 ID=mRNA_2725|Name=jgi.p|Nanoce1779_2|337135|organism=Nannochloropsis oceanica|type=mRNA|length=1353bp|location=Sequence derived from alignment at scaffold_5:1033491..1034843- (Nannochloropsis oceanica)
GCCCCTTCATTTGTCAAAATCTTCTGTCCACCCTCCCTGGATCTCGGCGT
CGAGCACGCACTCATGCATTCGCATTTTATCCTCATTCATCACAGAGAGC
AGCAACCCACTAATCACGCGGACTGTCTCCCACCGGCGTCGTCCCCCTCC
GAACGACAGAGCAACCAGCATCATTCGGAGCCTTTACTTATGTCGTTCAC
ATCGATACTACGGACCATCATATTTAACTTGGGCGCCCTGGCGGTGGCAT
ACGTCCTCCTTCTGAGTGGTGTGCACAAATTTACGTACAAGGTACGTTGA
AAGGAAGGAGCGCGGACAGCAGGGAGGATGAGACCGAAGGGACTTGGCGG
GGCGCGACCTGGTGCTACGTCGAAGGGTCTTGCTCATGGCCTTGGCGCTG
AACAAGGTCCGCACTGGTCAAGGACGAATATGGGGGAGGAAGGAGAGGCT
TAAGGAGGACTCATAATGTCCGCCAGACAAGCCTTGACATTCCTATTCGA
ACCATTTTCCCAGTCAATGCACAGATATAAATGTATTCTTTCCATCCACC
CCTTCCTTCTTTTCATTTTCTTGCTTTCGCCATTCACTCATCCGCTGCAT
CCCGTCACCGTGTACCTATTATAGCTTTGGCGCGTCGAGCTCTCCCAAGG
TCTCTACCGCTCCCTCAACAAGTCCTACCTCCTGGCGACCGAGCAGGCCT
ACAAACACATCGACGCCTTTTTTGCCTCCCACCCGTCTCTCCCTCCCGCC
CTCCCGCGCTACCATGCCTCAACCATTAAGGCCTTCGTTGGAGTGTTTGA
ATTACTGCTGGCTTTTCTCTGGCTGACGCGACGCTGGCGGGCCGCGGCAT
GGGGAAGCGCGTTGTGCTTTGCCTCGTGGATGGCCATTGCGTGGTCAGAT
TTCTTGCCGGACTCGGCGGGGGGGGAGGAAGGCATGTCATTCGCCTTATT
CTTCTTCGGCTTGTCGCTGGGCTTGCTATTTACCGGGCCGAGGAGTGGCA
AGAATATTGGAGGGGACGTGGCGAGGGAAGGTGCAGGCGGCGCCTCATCG
AAGAAGCAGAGATGAAAGAAAGGGATGAAAGGGATAGGGATAGAGAGATG
TGAGGAAATGAAACTAAAAAGTATGTAAAGTAAAAGTAAAGAAAGGGGAA
TGATAGGACGGAGGGAATGCGTTGACTTGAGCACCAAGAAAACTTCTCCC
TACTTTGTCCTCCTCCACAGGATATGCACCAAGTGACGACAAAGACGTGG
TCATGGATAATACTTTCTTTTGTACTACCTACCATGCTGCCTTTGCAAAT
TGTTCGTTTTGGGGACTCAGCAGATGACGAGGACGAAAGGCTATATCGCA
AAT
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Coding sequence (CDS) from alignment at scaffold_5:1033491..1034843-

>mRNA_2725 ID=mRNA_2725|Name=jgi.p|Nanoce1779_2|337135|organism=Nannochloropsis oceanica|type=CDS|length=1338bp|location=Sequence derived from alignment at scaffold_5:1033491..1034843- (Nannochloropsis oceanica)
CTTTGGCGCGTCGAGCTCTCCCAAGGTCTCTACCGCTCCCTCAACAAGTC
CTACCTCCTGGCGACCGAGCAGGCCTACAAACACATCGACGCCTTTTTTG
CCTCCCACCCGTCTCTCCCTCCCGCCCTCCCGCGCTACCATGCCTCAACC
ATTAAGGCCTTCGTTGGAGTGTTTGAATTACTGCTGGCTTTTCTCTGGCT
GACGCGACGCTGGCGGGCCGCGGCATGGGGAAGCGCGTTGTGCTTTGCCT
CGTGGATGGCCATTGCGTGGTCAGATTTCTTGCCGGACTCGGCGGGGGGG
GAGGAAGGCATGTCATTCGCCTTATTCTTCTTCGGCTTGTCGCTGGGCTT
GCTATTTACCGGGCCGAGGAGTGGCAAGAATATTGGAGGGGACGTGGCGA
GGGAAGGTGCAGGCGGCGCCTCATCGAAGAAGCAGAGATGAATGCATTCG
CATTTTATCCTCATTCATCACAGAGAGCAGCAACCCACTAATCACGCGGA
CTGTCTCCCACCGGCGTCGTCCCCCTCCGAACGACAGAGCAACCAGCATC
ATTCGGAGCCTTTACTTATGTCGTTCACATCGATACTACGGACCATCATA
TTTAACTTGGGCGCCCTGGCGGTGGCATACGTCCTCCTTCTGAGTGGTGT
GCACAAATTTACGTACAAGCTTTGGCGCGTCGAGCTCTCCCAAGGTCTCT
ACCGCTCCCTCAACAAGTCCTACCTCCTGGCGACCGAGCAGGCCTACAAA
CACATCGACGCCTTTTTTGCCTCCCACCCGTCTCTCCCTCCCGCCCTCCC
GCGCTACCATGCCTCAACCATTAAGGCCTTCGTTGGAGTGTTTGAATTAC
TGCTGGCTTTTCTCTGGCTGACGCGACGCTGGCGGGCCGCGGCATGGGGA
AGCGCGTTGTGCTTTGCCTCGTGGATGGCCATTGCGTGGTCAGATTTCTT
GCCGGACTCGGCGGGGGGGGAGGAAGGCATGTCATTCGCCTTATTCTTCT
TCGGCTTGTCGCTGGGCTTGCTATTTACCGGGCCGAGGAGTGGCAAGAAT
ATTGGAGGGGACGTGGCGAGGGAAGGTGCAGGCGGCGCCTCATCGAAGAA
GCAGAGATGAATGCATTCGCATTTTATCCTCATTCATCACAGAGAGCAGC
AACCCACTAATCACGCGGACTGTCTCCCACCGGCGTCGTCCCCCTCCGAA
CGACAGAGCAACCAGCATCATTCGGAGCCTTTACTTATGTCGTTCACATC
GATACTACGGACCATCATATTTAACTTGGGCGCCCTGGCGGTGGCATACG
TCCTCCTTCTGAGTGGTGTGCACAAATTTACGTACAAG
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Synonyms
Publications